RchiOBHm_Chr3g0451721

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000071
Physical Location & Seq
Reverse (-)
2678308 .. 2683900
5593 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41895

Sequence Viewer

Length: 2376 bp
ATGGGATTGTTCACCAAACCACATGTCCACAAACACCTGAACAAAATGGAGTGTCTGAAAGGAAAAACCGTCATTTACTTGATATGGCTCGTGCCCTTCTCTTTAGTGCCCATATGCCTAAGTATCTTTGGGGCGATGCTGTATATGCTTCCTCCCATCTTATCAATCGTCTTCCCTCTAGTGTCCTTCAGGGCAAAATCCCATTTGAGGTTCTTGCATCTCATGTCTCCTTACCTTCATTTCATAATCTTCCAGCTCGTGTCTTTGGTTGTGTTGCTTTTGTCCATGTTCCTAAGAACCAGAGGTCTAAATTGGATGCTCGGGCACTTAAGTGTGTGTTTGTTGGCTACGGAGGGTATCAGAAAGGATACATCTCTTCAGGGGGAGAATTCATTTTTTGAAGAGTTGTATCATGGAGAGGGGGAGGAATCAGAAGGAGGAGAAGAAGCAGGTGGTATTTTGACGGATCCAGTTGAGACCATTAGCTCACCGTCTCCAGAAGCTGAAGCTCCAAACATCCAAGCACCAGTTTCTATGGCTGAAAATGATGTTGAAGACACAATTGTCCCTCCTACCATTGCTTCTACCCCTGACCCACAACTTCCTGGTACTGAAGATCACTCATTTGAGGTATGTCCACCCACTAGAACTAGTAGTAATGAGTCTAATGTTGGGCAATATGTGTTACCAAATAGGATCACTCGGGGTCAATCAGCCAAAAGATATGAACCTACTATTACTGCCAAATCAAAATACCCAGTAGCCAATTATATGTCCACTAGGAGGTTGTCTAAGTCATATGAATCTTTTGTGAATCAAATATCTGCTGTATCAGTACCTAACAAAGTGCAGGATGCATTGGGGGATCCAAAGTGGAGGAAGGCAATGGAGGAAGAGATGGAGGCGTTACAGAAGAGCAATACTTGGCAACTTGTGCCTCCACCACAAGGCAAGAAGGCTGTAGGGTGTCGTTGGGTGTTTTCCGTGAAGCATAATGCAGATGGATCAGTGAATAGGTACAAAGCACGCCTTGTAGCAAAGGGGTTTACTCAGACGTATGGTATAGACTACGATGAAACGTTTGCTCCTGTTGCCAAGATGAACACTATTCGAGTTCTGCTTTCGTTTGCTGCTAGTTTAAACTGGCCACTCCGACAGTTCGATGTCAAGAATGCATTTCTTCATGGAGAGTTAACCGAGGAAGTGTACATGAGCCTTCCACCTGGGTATGTAGCTGCTTCTCCTGGTGATTTTGTATGCAAGTTGAAAAAGTCTCTGTATGGTCTCAAACAATCGCCTCGTGCTTGGTTTGGGAGATTTTCACAATTCATGCGAAAGGTTGGTTACAAACAGAGCAACTCAGATCATACCTTGTTTCTCAAGCATCAACAAGGGAAGGTAACAGCTCTAATTATTTATGTGGATGATATGGTAATCACCGGCAATAATACTGTTGAGATGGATAGATTGCAGAGACAGCTAGCCTCTGAGTTTGAGATGAAGGACTTAGGTGAACTTAAGTACTTCTTAGGAATTGAGGTAGCCAGGGGGAGAGAAGGGATATACCTGTGCCAGAGGAAGTACGTTCTTGACTTGCTAACAAAAACAGGTTTGTTGGATTGTAGACCTATAGATACTCCTATTGAGCAGAATCATTGTTTAGCTGAGTATCCAGATCAGGTACCTACTGATCGAGCTTGCTATCAGAGGTTAGTAGGGCGCTTAATTTATTTGGCTCATACTAGACCAGATATTGCATATGCAGTGAGTGTGGTGAGTCAGTTCATGCATAACCCAAGTGAGAGTCACATGGATGCTGTTATGAGAATTTTAAAGTACCTGAAGTCAGCTCCAGGAAGGGGAGTATTGTTTTCTAAACACAACAACATCCTTGAGGTTTGTGGCTTTACAAATGCAGATTGGGCTGGAAATATTACAAACAGGAGGTCAACATCAGGTTACTTTACATTTGTGGGAGGTAATTTGGTTACATGGAAGAGTAAGAAACAGAAAGTTGTGGCACGATCTAGTGCTGAGGCCGAGTATAGAGGTATGGCTCACGGAGTGTGTGAATTGCTGTGGCTGAGAAATCTATTACGTGATTTGGGTTTCAAACTCGAAAGTACTATGCCGTTGTATTGTGACAACAAGGCAGCCATTGACATATCACAGAATCCAGTACAACATGATCGTACTAAGCATGTGGAGGTTGATCGTCACTTTATAAAGGAGAAGCTAGATGCCAAAATTATTAGCTTTCCTTTTGTTCCAACTGAAGAGCAACTTGCAGATATACTTACCAAAGGAGTTTCTAGGAAGGCATTTTATGACTCACTAAGCAAGTTGGGCATGGTTGATGTATATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

791

Amino Acids

89.17

Weight (kDa)

8.69

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 307 - 549 1.3e-75 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2225
AarI CACCTGC 1 cut(s) 440
AasI GACNNNNNNGTC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 440
Acc65I GGTACC 1 cut(s) 1681
AccB1I GGYRCC 1 cut(s) 1681
AccI GTMKAC 1 cut(s) 1624
AclI AACGTT 1 cut(s) 1079
AclWI GGATC 6 cut(s) 461, 474, 704, 860, 873, 1012
AcoI YGGCCR 1 cut(s) 1145
AcsI RAATTY 2 cut(s) 388, 1827
AcuI CTGAAG 6 cut(s) 172, 362, 525, 633, 1862, 2295
AdeI CACNNNGTG 1 cut(s) 2065
AfiI CCNNNNNNNGG 4 cut(s) 207, 783, 947, 1859
AflII CTTAAG 2 cut(s) 328, 1517
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 4 cut(s) 401, 554, 1267, 2113
AhlI ACTAGT 1 cut(s) 650
AjnI CCWGG 5 cut(s) 604, 1222, 1243, 1544, 1852
AleI CACNNNNGTG 1 cut(s) 330
Alw26I GTCTC 6 cut(s) 231, 470, 498, 1278, 1289, 1468
AlwI GGATC 6 cut(s) 461, 474, 704, 860, 873, 1012
AlwNI CAGNNNCTG 1 cut(s) 503
Ama87I CYCGRG 2 cut(s) 320, 702
AoxI GGCC 2 cut(s) 1145, 2037
ApeKI GCWGC 3 cut(s) 1130, 1235, 2153
ApoI RAATTY 2 cut(s) 388, 1827
ArsI GACNNNNNNTTYG 4 cut(s) 9, 41, 1931, 1963
Asp718I GGTACC 1 cut(s) 1681
AspLEI GCGC 2 cut(s) 1722, 2368
AsuHPI GGTGA 6 cut(s) 4, 480, 1259, 1429, 1523, 1786
AsuNHI GCTAGC 1 cut(s) 1480
AvaI CYCGRG 2 cut(s) 320, 702
BaeGI GKGCMC 3 cut(s) 96, 111, 327
BalI TGGCCA 1 cut(s) 1147
BamHI GGATCC 2 cut(s) 466, 865
BanI GGYRCC 1 cut(s) 1681
BauI CACGAG 3 cut(s) 89, 257, 1299
BbsI GAAGAC 2 cut(s) 163, 561
BbvCI CCTCAGC 1 cut(s) 2034
BbvI GCAGC 3 cut(s) 1117, 1222, 2165
BccI CCATC 4 cut(s) 164, 892, 995, 1453
BceAI ACGGC 1 cut(s) 2116
BciT130I CCWGG 5 cut(s) 606, 1224, 1245, 1546, 1854
BciVI GTATCC 2 cut(s) 361, 1680
BcoDI GTCTC 6 cut(s) 231, 470, 498, 1278, 1289, 1468
BcuI ACTAGT 1 cut(s) 650
BfmI CTRYAG 2 cut(s) 960, 1629
BfoI RGCGCY 1 cut(s) 1723
BfrI CTTAAG 2 cut(s) 328, 1517
BfuAI ACCTGC 1 cut(s) 440
BfuI GTATCC 2 cut(s) 361, 1680
BisI GCNGC 3 cut(s) 1131, 1236, 2154
BlsI GCNGC 3 cut(s) 1132, 1237, 2155
BmcAI AGTACT 2 cut(s) 1523, 2125
Bme1390I CCNGG 5 cut(s) 606, 1224, 1245, 1546, 1854
BmeT110I CYCGRG 2 cut(s) 320, 702
BmiI GGNNCC 3 cut(s) 468, 867, 1683
BmrFI CCNGG 5 cut(s) 606, 1224, 1245, 1546, 1854
BmrI ACTGGG 1 cut(s) 752
BmsI GCATC 7 cut(s) 126, 226, 306, 844, 1393, 1804, 2230
BmtI GCTAGC 1 cut(s) 1484
BmuI ACTGGG 1 cut(s) 752
BpiI GAAGAC 2 cut(s) 163, 561
BpmI CTGGAG 2 cut(s) 480, 1836
Bpu10I CCTNAGC 1 cut(s) 2034
BpuEI CTTGAG 2 cut(s) 1364, 1913
BsaAI YACGTR 1 cut(s) 2099
BsaI GGTCTC 2 cut(s) 470, 1289
BsaJI CCNNGG 3 cut(s) 1197, 1223, 1545
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 783, 947, 1859
Bse118I RCCGGY 1 cut(s) 1439
Bse1I ACTGG 5 cut(s) 470, 527, 758, 1148, 2177
Bse3DI GCAATG 2 cut(s) 576, 891
BseBI CCWGG 5 cut(s) 606, 1224, 1245, 1546, 1854
BseDI CCNNGG 3 cut(s) 1197, 1223, 1545
BseGI GGATG 6 cut(s) 321, 516, 859, 1429, 1819, 1887
BseLI CCNNNNNNNGG 4 cut(s) 207, 783, 947, 1859
BseMI GCAATG 2 cut(s) 576, 891
BseMII CTCAG 6 cut(s) 1064, 1374, 1479, 1656, 2025, 2075
BseNI ACTGG 5 cut(s) 470, 527, 758, 1148, 2177
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 3 cut(s) 96, 111, 327
BseXI GCAGC 3 cut(s) 1117, 1222, 2165
BsgI GTGCAG 1 cut(s) 869
BshFI GGCC 2 cut(s) 1147, 2039
BshNI GGYRCC 1 cut(s) 1681
BsiHKCI CYCGRG 2 cut(s) 320, 702
BsiSI CCGG 1 cut(s) 1440
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 4 cut(s) 207, 783, 947, 1859
BsmAI GTCTC 6 cut(s) 231, 470, 498, 1278, 1289, 1468
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 1177
BsnI GGCC 2 cut(s) 1147, 2039
Bso31I GGTCTC 2 cut(s) 470, 1289
BsoBI CYCGRG 2 cut(s) 320, 702
Bsp1286I GDGCHC 3 cut(s) 96, 111, 327
Bsp1407I TGTACA 1 cut(s) 1206
BspANI GGCC 2 cut(s) 1147, 2039
BspCNI CTCAG 6 cut(s) 1063, 1373, 1480, 1657, 2026, 2076
BspLI GGNNCC 3 cut(s) 468, 867, 1683
BspMI ACCTGC 1 cut(s) 440
BspOI GCTAGC 1 cut(s) 1484
BspPI GGATC 6 cut(s) 461, 474, 704, 860, 873, 1012
BspQI GCTCTTC 2 cut(s) 908, 2271
BspT107I GGYRCC 1 cut(s) 1681
BspTI CTTAAG 2 cut(s) 328, 1517
BspTNI GGTCTC 2 cut(s) 470, 1289
BsrDI GCAATG 2 cut(s) 576, 891
BsrFI RCCGGY 1 cut(s) 1439
BsrGI TGTACA 1 cut(s) 1206
BsrI ACTGG 5 cut(s) 470, 527, 758, 1148, 2177
BssAI RCCGGY 1 cut(s) 1439
BssECI CCNNGG 3 cut(s) 1197, 1223, 1545
BssSI CACGAG 3 cut(s) 89, 257, 1299
Bst2BI CACGAG 3 cut(s) 89, 257, 1299
Bst2UI CCWGG 5 cut(s) 606, 1224, 1245, 1546, 1854
Bst4CI ACNGT 4 cut(s) 70, 492, 1158, 1453
Bst6I CTCTTC 6 cut(s) 381, 396, 888, 908, 1991, 2271
BstAFI CTTAAG 2 cut(s) 328, 1517
BstAPI GCANNNNNTGC 1 cut(s) 934
BstAUI TGTACA 1 cut(s) 1206
BstBAI YACGTR 1 cut(s) 2099
BstC8I GCNNGC 3 cut(s) 1027, 1482, 1699
BstF5I GGATG 6 cut(s) 321, 516, 859, 1429, 1819, 1887
BstH2I RGCGCY 1 cut(s) 1723
BstHHI GCGC 2 cut(s) 1722, 2368
BstMAI GTCTC 6 cut(s) 231, 470, 498, 1278, 1289, 1468
BstMWI GCNNNNNNNGC 6 cut(s) 145, 934, 1091, 1477, 1922, 2346
BstNI CCWGG 5 cut(s) 606, 1224, 1245, 1546, 1854
BstNSI RCATGY 2 cut(s) 26, 2204
BstSCI CCNGG 5 cut(s) 604, 1222, 1243, 1544, 1852
BstSFI CTRYAG 2 cut(s) 960, 1629
BstSLI GKGCMC 3 cut(s) 96, 111, 327
BstV1I GCAGC 3 cut(s) 1117, 1222, 2165
BstV2I GAAGAC 2 cut(s) 163, 561
BstX2I RGATCY 2 cut(s) 466, 865
BstYI RGATCY 2 cut(s) 466, 865
BsuI GTATCC 2 cut(s) 361, 1680
BsuRI GGCC 2 cut(s) 1147, 2039
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 6 cut(s) 321, 516, 859, 1429, 1819, 1887
BtsI GCAGTG 1 cut(s) 1770
BtsIMutI CAGTG 2 cut(s) 1014, 1770
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 3 cut(s) 1027, 1482, 1699
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 2 cut(s) 1722, 2368
Cfr10I RCCGGY 1 cut(s) 1439
DraI TTTAAA 2 cut(s) 1140, 1833
DraIII CACNNNGTG 1 cut(s) 2065
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 1 cut(s) 1145
Eam1104I CTCTTC 6 cut(s) 381, 396, 888, 908, 1991, 2271
EarI CTCTTC 6 cut(s) 381, 396, 888, 908, 1991, 2271
Eco31I GGTCTC 2 cut(s) 470, 1289
Eco57I CTGAAG 6 cut(s) 172, 362, 525, 633, 1862, 2295
Eco88I CYCGRG 2 cut(s) 320, 702
EcoRI GAATTC 1 cut(s) 388
EcoRII CCWGG 5 cut(s) 604, 1222, 1243, 1544, 1852
EcoT22I ATGCAT 3 cut(s) 859, 1177, 1791
Esp3I CGTCTC 1 cut(s) 498
FalI AAGNNNNNCTT 6 cut(s) 1014, 1046, 1511, 1543, 2268, 2300
FaqI GGGAC 1 cut(s) 551
FauNDI CATATG 3 cut(s) 113, 799, 1759
FblI GTMKAC 1 cut(s) 1624
Fnu4HI GCNGC 3 cut(s) 1131, 1236, 2154
FokI GGATG 6 cut(s) 328, 503, 866, 1436, 1826, 1874
Fsp4HI GCNGC 3 cut(s) 1131, 1236, 2154
GlaI GCGC 2 cut(s) 1721, 2367
GluI GCNGC 3 cut(s) 1131, 1236, 2154
GsuI CTGGAG 2 cut(s) 480, 1836
HaeII RGCGCY 1 cut(s) 1723
HaeIII GGCC 2 cut(s) 1147, 2039
HapII CCGG 1 cut(s) 1440
HhaI GCGC 2 cut(s) 1722, 2368
Hin6I GCGC 2 cut(s) 1720, 2366
HinP1I GCGC 2 cut(s) 1720, 2366
HincII GTYRAC 2 cut(s) 1194, 1950
HindII GTYRAC 2 cut(s) 1194, 1950
HinfI GANTC 9 cut(s) 428, 662, 803, 814, 1651, 1777, 1804, 2173, 2330
HpaI GTTAAC 1 cut(s) 1194
HpaII CCGG 1 cut(s) 1440
HphI GGTGA 6 cut(s) 4, 480, 1259, 1429, 1523, 1786
Hpy188I TCNGA 8 cut(s) 57, 362, 433, 1053, 1154, 1363, 1489, 1707
Hpy188III TCNNGA 4 cut(s) 497, 1168, 1589, 1673
HpyCH4III ACNGT 4 cut(s) 70, 492, 1158, 1453
HpyCH4IV ACGT 4 cut(s) 1055, 1079, 1584, 2098
HpyF10VI GCNNNNNNNGC 6 cut(s) 145, 934, 1091, 1477, 1922, 2346
HpySE526I ACGT 4 cut(s) 1055, 1079, 1584, 2098
HspAI GCGC 2 cut(s) 1720, 2366
KpnI GGTACC 1 cut(s) 1685
KspAI GTTAAC 1 cut(s) 1194
LguI GCTCTTC 2 cut(s) 908, 2271
LmnI GCTCC 3 cut(s) 514, 1090, 1855
Lsp1109I GCAGC 3 cut(s) 1117, 1222, 2165
LweI GCATC 7 cut(s) 126, 226, 306, 844, 1393, 1804, 2230
MaeII ACGT 4 cut(s) 1055, 1079, 1584, 2098
MaeIII GTNAC 9 cut(s) 684, 906, 1343, 1399, 1805, 1958, 1987, 2141, 2216
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 2 cut(s) 466, 865
MhlI GDGCHC 3 cut(s) 96, 111, 327
MlsI TGGCCA 1 cut(s) 1147
MluNI TGGCCA 1 cut(s) 1147
MlyI GAGTC 4 cut(s) 671, 1786, 1813, 2324
MmeI TCCRAC 3 cut(s) 1177, 1596, 2294
Mox20I TGGCCA 1 cut(s) 1147
Mph1103I ATGCAT 3 cut(s) 859, 1177, 1791
MscI TGGCCA 1 cut(s) 1147
MseI TTAA 6 cut(s) 329, 1139, 1193, 1518, 1724, 1832
MslI CAYNNNNRTG 2 cut(s) 330, 1812
Msp20I TGGCCA 1 cut(s) 1147
MspCI CTTAAG 2 cut(s) 328, 1517
MspI CCGG 1 cut(s) 1440
MspR9I CCNGG 5 cut(s) 606, 1224, 1245, 1546, 1854
MssI GTTTAAAC 1 cut(s) 1140
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 1 cut(s) 1177
MvaI CCWGG 5 cut(s) 606, 1224, 1245, 1546, 1854
MwoI GCNNNNNNNGC 6 cut(s) 145, 934, 1091, 1477, 1922, 2346
NdeI CATATG 3 cut(s) 113, 799, 1759
NheI GCTAGC 1 cut(s) 1480
NlaIV GGNNCC 3 cut(s) 468, 867, 1683
NmeAIII GCCGAG 1 cut(s) 2065
NmuCI GTSAC 3 cut(s) 1805, 2141, 2216
NsiI ATGCAT 3 cut(s) 859, 1177, 1791
NspI RCATGY 2 cut(s) 26, 2204
OliI CACNNNNGTG 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 22
PciSI GCTCTTC 2 cut(s) 908, 2271
PctI GAATGC 1 cut(s) 1177
PfeI GAWTC 5 cut(s) 428, 803, 814, 1651, 2173
PfoI TCCNGGA 1 cut(s) 1852
PkrI GCNGC 3 cut(s) 1132, 1237, 2155
PleI GAGTC 4 cut(s) 670, 1785, 1812, 2324
PmeI GTTTAAAC 1 cut(s) 1140
PpsI GAGTC 4 cut(s) 670, 1785, 1812, 2324
Ppu21I YACGTR 1 cut(s) 2099
PscI ACATGT 1 cut(s) 22
PsiI TTATAA 1 cut(s) 2225
Psp1406I AACGTT 1 cut(s) 1079
Psp6I CCWGG 5 cut(s) 604, 1222, 1243, 1544, 1852
PspGI CCWGG 5 cut(s) 604, 1222, 1243, 1544, 1852
PspN4I GGNNCC 3 cut(s) 468, 867, 1683
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 466, 865
RseI CAYNNNNRTG 2 cut(s) 330, 1812
SapI GCTCTTC 2 cut(s) 908, 2271
SaqAI TTAA 6 cut(s) 329, 1139, 1193, 1518, 1724, 1832
SatI GCNGC 3 cut(s) 1131, 1236, 2154
ScaI AGTACT 2 cut(s) 1523, 2125
SchI GAGTC 4 cut(s) 671, 1786, 1813, 2324
ScrFI CCNGG 5 cut(s) 606, 1224, 1245, 1546, 1854
SduI GDGCHC 3 cut(s) 96, 111, 327
SfaNI GCATC 7 cut(s) 126, 226, 306, 844, 1393, 1804, 2230
SfcI CTRYAG 2 cut(s) 960, 1629
SmiMI CAYNNNNRTG 2 cut(s) 330, 1812
SmlI CTYRAG 4 cut(s) 328, 1379, 1517, 1892
SmoI CTYRAG 4 cut(s) 328, 1379, 1517, 1892
SpeI ACTAGT 1 cut(s) 650
SspI AATATT 1 cut(s) 1933
StyD4I CCNGG 5 cut(s) 604, 1222, 1243, 1544, 1852
TaaI ACNGT 4 cut(s) 70, 492, 1158, 1453
TaiI ACGT 4 cut(s) 1058, 1082, 1587, 2101
TaqI TCGA 4 cut(s) 1111, 1161, 1693, 2118
TatI WGTACW 4 cut(s) 1206, 1521, 2123, 2179
TfiI GAWTC 5 cut(s) 428, 803, 814, 1651, 2173
Tru1I TTAA 6 cut(s) 329, 1139, 1193, 1518, 1724, 1832
Tru9I TTAA 6 cut(s) 329, 1139, 1193, 1518, 1724, 1832
TscAI CASTG 2 cut(s) 1014, 1770
TseFI GTSAC 3 cut(s) 1805, 2141, 2216
TseI GCWGC 3 cut(s) 1130, 1235, 2153
Tsp45I GTSAC 3 cut(s) 1805, 2141, 2216
TspGWI ACGGA 4 cut(s) 365, 479, 973, 2076
TspRI CASTG 2 cut(s) 1014, 1770
Vha464I CTTAAG 2 cut(s) 328, 1517
XapI RAATTY 2 cut(s) 388, 1827
XceI RCATGY 2 cut(s) 26, 2204
XmiI GTMKAC 1 cut(s) 1624
ZrmI AGTACT 2 cut(s) 1523, 2125
Zsp2I ATGCAT 3 cut(s) 859, 1177, 1791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.