Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 32 - 276 | 1.2e-73 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 587 |
| AccI | GTMKAC | 2 cut(s) | 1223, 1340 |
| AccIII | TCCGGA | 1 cut(s) | 853 |
| AciI | CCGC | 2 cut(s) | 264, 585 |
| AclWI | GGATC | 4 cut(s) | 38, 693, 864, 1011 |
| AcsI | RAATTY | 2 cut(s) | 412, 1201 |
| AfaI | GTAC | 3 cut(s) | 197, 704, 977 |
| AfeI | AGCGCT | 1 cut(s) | 233 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1026 |
| AgsI | TTSAA | 6 cut(s) | 448, 469, 494, 1106, 1168, 1232 |
| AjnI | CCWGG | 3 cut(s) | 101, 400, 1305 |
| AluBI | AGCT | 4 cut(s) | 176, 485, 1109, 1186 |
| AluI | AGCT | 4 cut(s) | 176, 485, 1109, 1186 |
| Alw21I | GWGCWC | 1 cut(s) | 22 |
| Alw26I | GTCTC | 4 cut(s) | 248, 459, 480, 809 |
| AlwI | GGATC | 4 cut(s) | 38, 693, 864, 1011 |
| Aor13HI | TCCGGA | 1 cut(s) | 853 |
| Aor51HI | AGCGCT | 1 cut(s) | 233 |
| AoxI | GGCC | 3 cut(s) | 323, 645, 926 |
| ApeKI | GCWGC | 2 cut(s) | 308, 1068 |
| ApoI | RAATTY | 2 cut(s) | 412, 1201 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1364, 1396 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 353 |
| AspLEI | GCGC | 2 cut(s) | 234, 1068 |
| AspS9I | GGNCC | 1 cut(s) | 646 |
| AsuHPI | GGTGA | 2 cut(s) | 968, 1010 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 641, 674, 874, 907 |
| BauI | CACGAG | 1 cut(s) | 21 |
| BbsI | GAAGAC | 1 cut(s) | 140 |
| Bbv12I | GWGCWC | 1 cut(s) | 22 |
| BbvI | GCAGC | 2 cut(s) | 320, 1080 |
| BccI | CCATC | 4 cut(s) | 144, 173, 634, 854 |
| BciT130I | CCWGG | 3 cut(s) | 103, 402, 1307 |
| BciVI | GTATCC | 1 cut(s) | 25 |
| BcoDI | GTCTC | 4 cut(s) | 248, 459, 480, 809 |
| BfaI | CTAG | 6 cut(s) | 77, 893, 924, 1026, 1055, 1092 |
| BfmI | CTRYAG | 2 cut(s) | 267, 650 |
| BfoI | RGCGCY | 1 cut(s) | 235 |
| BfuI | GTATCC | 1 cut(s) | 25 |
| BisI | GCNGC | 3 cut(s) | 264, 309, 1069 |
| BlsI | GCNGC | 3 cut(s) | 265, 310, 1070 |
| BmcAI | AGTACT | 1 cut(s) | 704 |
| Bme1390I | CCNGG | 3 cut(s) | 103, 402, 1307 |
| BmgT120I | GGNCC | 1 cut(s) | 646 |
| BmrFI | CCNGG | 3 cut(s) | 103, 402, 1307 |
| BmrI | ACTGGG | 1 cut(s) | 1000 |
| BmsI | GCATC | 2 cut(s) | 134, 973 |
| BmuI | ACTGGG | 1 cut(s) | 1000 |
| BpiI | GAAGAC | 1 cut(s) | 140 |
| BpuEI | CTTGAG | 2 cut(s) | 42, 1172 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1021, 1427 |
| BsaJI | CCNNGG | 1 cut(s) | 102 |
| BsaWI | WCCGGW | 2 cut(s) | 853, 1260 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1125, 1155 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1026 |
| Bse1I | ACTGG | 2 cut(s) | 433, 995 |
| Bse3DI | GCAATG | 2 cut(s) | 69, 840 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1021, 1427 |
| BseAI | TCCGGA | 1 cut(s) | 853 |
| BseBI | CCWGG | 3 cut(s) | 103, 402, 1307 |
| BseDI | CCNNGG | 1 cut(s) | 102 |
| BseGI | GGATG | 3 cut(s) | 149, 631, 988 |
| BseJI | GATNNNNATC | 2 cut(s) | 1021, 1427 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1026 |
| BseMI | GCAATG | 2 cut(s) | 69, 840 |
| BseMII | CTCAG | 3 cut(s) | 242, 555, 1101 |
| BseNI | ACTGG | 2 cut(s) | 433, 995 |
| BseXI | GCAGC | 2 cut(s) | 320, 1080 |
| Bsh1285I | CGRYCG | 1 cut(s) | 825 |
| BshFI | GGCC | 3 cut(s) | 325, 647, 928 |
| BsiEI | CGRYCG | 1 cut(s) | 825 |
| BsiHKAI | GWGCWC | 1 cut(s) | 22 |
| BsiSI | CCGG | 2 cut(s) | 854, 1261 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1026 |
| BsmAI | GTCTC | 4 cut(s) | 248, 459, 480, 809 |
| BsmI | GAATGC | 1 cut(s) | 798 |
| BsnI | GGCC | 3 cut(s) | 325, 647, 928 |
| Bsp1286I | GDGCHC | 1 cut(s) | 22 |
| Bsp13I | TCCGGA | 1 cut(s) | 853 |
| BspACI | CCGC | 2 cut(s) | 264, 585 |
| BspANI | GGCC | 3 cut(s) | 325, 647, 928 |
| BspCNI | CTCAG | 3 cut(s) | 241, 554, 1102 |
| BspEI | TCCGGA | 1 cut(s) | 853 |
| BspPI | GGATC | 4 cut(s) | 38, 693, 864, 1011 |
| BsrBI | CCGCTC | 1 cut(s) | 587 |
| BsrDI | GCAATG | 2 cut(s) | 69, 840 |
| BsrI | ACTGG | 2 cut(s) | 433, 995 |
| BssECI | CCNNGG | 1 cut(s) | 102 |
| BssNAI | GTATAC | 1 cut(s) | 1341 |
| BssSI | CACGAG | 1 cut(s) | 21 |
| Bst1107I | GTATAC | 1 cut(s) | 1341 |
| Bst2BI | CACGAG | 1 cut(s) | 21 |
| Bst2UI | CCWGG | 3 cut(s) | 103, 402, 1307 |
| Bst4CI | ACNGT | 5 cut(s) | 139, 163, 286, 365, 803 |
| Bst6I | CTCTTC | 1 cut(s) | 246 |
| BstC8I | GCNNGC | 1 cut(s) | 123 |
| BstDEI | CTNAG | 8 cut(s) | 228, 370, 541, 666, 689, 732, 1110, 1266 |
| BstF5I | GGATG | 3 cut(s) | 149, 631, 988 |
| BstH2I | RGCGCY | 1 cut(s) | 235 |
| BstHHI | GCGC | 2 cut(s) | 234, 1068 |
| BstMAI | GTCTC | 4 cut(s) | 248, 459, 480, 809 |
| BstMCI | CGRYCG | 1 cut(s) | 825 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 269, 992, 1192 |
| BstNI | CCWGG | 3 cut(s) | 103, 402, 1307 |
| BstNSI | RCATGY | 2 cut(s) | 397, 1274 |
| BstSCI | CCNGG | 3 cut(s) | 101, 400, 1305 |
| BstSFI | CTRYAG | 2 cut(s) | 267, 650 |
| BstV1I | GCAGC | 2 cut(s) | 320, 1080 |
| BstV2I | GAAGAC | 1 cut(s) | 140 |
| BstX2I | RGATCY | 2 cut(s) | 43, 685 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 486 |
| BstYI | RGATCY | 2 cut(s) | 43, 685 |
| BstZ17I | GTATAC | 1 cut(s) | 1341 |
| BsuI | GTATCC | 1 cut(s) | 25 |
| BsuRI | GGCC | 3 cut(s) | 325, 647, 928 |
| BtsCI | GGATG | 3 cut(s) | 149, 631, 988 |
| Cac8I | GCNNGC | 1 cut(s) | 123 |
| CfoI | GCGC | 2 cut(s) | 234, 1068 |
| Cfr13I | GGNCC | 1 cut(s) | 646 |
| Csp6I | GTAC | 3 cut(s) | 196, 703, 976 |
| CviAII | CATG | 7 cut(s) | 394, 511, 1130, 1247, 1256, 1271, 1420 |
| CviQI | GTAC | 3 cut(s) | 196, 703, 976 |
| DdeI | CTNAG | 8 cut(s) | 228, 370, 541, 666, 689, 732, 1110, 1266 |
| Eam1104I | CTCTTC | 1 cut(s) | 246 |
| EarI | CTCTTC | 1 cut(s) | 246 |
| Eco147I | AGGCCT | 1 cut(s) | 928 |
| Eco47III | AGCGCT | 1 cut(s) | 233 |
| EcoO109I | RGGNCCY | 1 cut(s) | 646 |
| EcoRII | CCWGG | 3 cut(s) | 101, 400, 1305 |
| FaeI | CATG | 7 cut(s) | 397, 514, 1133, 1250, 1259, 1274, 1423 |
| FatI | CATG | 7 cut(s) | 393, 510, 1129, 1246, 1255, 1270, 1419 |
| FblI | GTMKAC | 2 cut(s) | 1223, 1340 |
| Fnu4HI | GCNGC | 3 cut(s) | 264, 309, 1069 |
| FokI | GGATG | 3 cut(s) | 156, 638, 995 |
| Fsp4HI | GCNGC | 3 cut(s) | 264, 309, 1069 |
| FspBI | CTAG | 6 cut(s) | 77, 893, 924, 1026, 1055, 1092 |
| GlaI | GCGC | 2 cut(s) | 233, 1067 |
| GluI | GCNGC | 3 cut(s) | 264, 309, 1069 |
| HaeII | RGCGCY | 1 cut(s) | 235 |
| HaeIII | GGCC | 3 cut(s) | 325, 647, 928 |
| HapII | CCGG | 2 cut(s) | 854, 1261 |
| HhaI | GCGC | 2 cut(s) | 234, 1068 |
| Hin1II | CATG | 7 cut(s) | 397, 514, 1133, 1250, 1259, 1274, 1423 |
| Hin6I | GCGC | 2 cut(s) | 232, 1066 |
| HinP1I | GCGC | 2 cut(s) | 232, 1066 |
| HinfI | GANTC | 4 cut(s) | 55, 291, 498, 1153 |
| HpaII | CCGG | 2 cut(s) | 854, 1261 |
| HphI | GGTGA | 2 cut(s) | 968, 1010 |
| Hpy166II | GTNNAC | 5 cut(s) | 54, 159, 978, 1224, 1341 |
| Hpy188I | TCNGA | 4 cut(s) | 48, 290, 544, 591 |
| Hpy188III | TCNNGA | 4 cut(s) | 295, 826, 854, 1189 |
| Hpy8I | GTNNAC | 5 cut(s) | 54, 159, 978, 1224, 1341 |
| HpyAV | CCTTC | 4 cut(s) | 676, 730, 894, 1075 |
| HpyCH4III | ACNGT | 5 cut(s) | 139, 163, 286, 365, 803 |
| HpyCH4IV | ACGT | 2 cut(s) | 757, 889 |
| HpyCH4V | TGCA | 4 cut(s) | 88, 308, 986, 1436 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 269, 992, 1192 |
| HpyF3I | CTNAG | 8 cut(s) | 228, 370, 541, 666, 689, 732, 1110, 1266 |
| HpySE526I | ACGT | 2 cut(s) | 757, 889 |
| Hsp92II | CATG | 7 cut(s) | 397, 514, 1133, 1250, 1259, 1274, 1423 |
| HspAI | GCGC | 2 cut(s) | 232, 1066 |
| Kpn2I | TCCGGA | 1 cut(s) | 853 |
| LmnI | GCTCC | 2 cut(s) | 17, 183 |
| Lsp1109I | GCAGC | 2 cut(s) | 320, 1080 |
| LweI | GCATC | 2 cut(s) | 134, 973 |
| MaeI | CTAG | 6 cut(s) | 77, 893, 924, 1026, 1055, 1092 |
| MaeII | ACGT | 2 cut(s) | 757, 889 |
| MaeIII | GTNAC | 5 cut(s) | 112, 221, 365, 616, 1057 |
| MbiI | CCGCTC | 1 cut(s) | 587 |
| MflI | RGATCY | 2 cut(s) | 43, 685 |
| MhlI | GDGCHC | 1 cut(s) | 22 |
| MluCI | AATT | 8 cut(s) | 240, 412, 695, 714, 966, 1201, 1352, 1388 |
| MlyI | GAGTC | 1 cut(s) | 49 |
| MmeI | TCCRAC | 4 cut(s) | 121, 890, 942, 1024 |
| MroI | TCCGGA | 1 cut(s) | 853 |
| MroXI | GAANNNNTTC | 1 cut(s) | 353 |
| MseI | TTAA | 7 cut(s) | 171, 408, 632, 698, 779, 1182, 1296 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1245 |
| MspA1I | CMGCKG | 1 cut(s) | 266 |
| MspI | CCGG | 2 cut(s) | 854, 1261 |
| MspR9I | CCNGG | 3 cut(s) | 103, 402, 1307 |
| Mva1269I | GAATGC | 1 cut(s) | 798 |
| MvaI | CCWGG | 3 cut(s) | 103, 402, 1307 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 269, 992, 1192 |
| NlaIII | CATG | 7 cut(s) | 397, 514, 1133, 1250, 1259, 1274, 1423 |
| NmuCI | GTSAC | 3 cut(s) | 112, 616, 1057 |
| NspI | RCATGY | 2 cut(s) | 397, 1274 |
| PceI | AGGCCT | 1 cut(s) | 928 |
| PctI | GAATGC | 1 cut(s) | 798 |
| PdmI | GAANNNNTTC | 1 cut(s) | 353 |
| PfeI | GAWTC | 3 cut(s) | 291, 498, 1153 |
| PkrI | GCNGC | 3 cut(s) | 265, 310, 1070 |
| Ple19I | CGATCG | 1 cut(s) | 825 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 3 cut(s) | 101, 400, 1305 |
| PspGI | CCWGG | 3 cut(s) | 101, 400, 1305 |
| PspPI | GGNCC | 1 cut(s) | 646 |
| PsuI | RGATCY | 2 cut(s) | 43, 685 |
| PvuI | CGATCG | 1 cut(s) | 825 |
| RsaI | GTAC | 3 cut(s) | 197, 704, 977 |
| RsaNI | GTAC | 3 cut(s) | 196, 703, 976 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1245 |
| SaqAI | TTAA | 7 cut(s) | 171, 408, 632, 698, 779, 1182, 1296 |
| SatI | GCNGC | 3 cut(s) | 264, 309, 1069 |
| Sau96I | GGNCC | 1 cut(s) | 646 |
| ScaI | AGTACT | 1 cut(s) | 704 |
| SchI | GAGTC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 3 cut(s) | 103, 402, 1307 |
| SduI | GDGCHC | 1 cut(s) | 22 |
| SfaNI | GCATC | 2 cut(s) | 134, 973 |
| SfcI | CTRYAG | 2 cut(s) | 267, 650 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1245 |
| SmlI | CTYRAG | 2 cut(s) | 57, 1187 |
| SmoI | CTYRAG | 2 cut(s) | 57, 1187 |
| Sse9I | AATT | 8 cut(s) | 240, 412, 695, 714, 966, 1201, 1352, 1388 |
| SseBI | AGGCCT | 1 cut(s) | 928 |
| SsiI | CCGC | 2 cut(s) | 264, 585 |
| SspMI | CTAG | 6 cut(s) | 77, 893, 924, 1026, 1055, 1092 |
| StuI | AGGCCT | 1 cut(s) | 928 |
| StyD4I | CCNGG | 3 cut(s) | 101, 400, 1305 |
| TaaI | ACNGT | 5 cut(s) | 139, 163, 286, 365, 803 |
| TaiI | ACGT | 2 cut(s) | 760, 892 |
| TaqI | TCGA | 4 cut(s) | 98, 825, 1117, 1403 |
| TasI | AATT | 8 cut(s) | 240, 412, 695, 714, 966, 1201, 1352, 1388 |
| TatI | WGTACW | 1 cut(s) | 702 |
| TauI | GCSGC | 1 cut(s) | 266 |
| TfiI | GAWTC | 3 cut(s) | 291, 498, 1153 |
| Tru1I | TTAA | 7 cut(s) | 171, 408, 632, 698, 779, 1182, 1296 |
| Tru9I | TTAA | 7 cut(s) | 171, 408, 632, 698, 779, 1182, 1296 |
| TseFI | GTSAC | 3 cut(s) | 112, 616, 1057 |
| TseI | GCWGC | 2 cut(s) | 308, 1068 |
| Tsp45I | GTSAC | 3 cut(s) | 112, 616, 1057 |
| TspGWI | ACGGA | 1 cut(s) | 995 |
| XapI | RAATTY | 2 cut(s) | 412, 1201 |
| XceI | RCATGY | 2 cut(s) | 397, 1274 |
| XmiI | GTMKAC | 2 cut(s) | 1223, 1340 |
| XmnI | GAANNNNTTC | 1 cut(s) | 353 |
| XspI | CTAG | 6 cut(s) | 77, 893, 924, 1026, 1055, 1092 |
| ZrmI | AGTACT | 1 cut(s) | 704 |