Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 3 - 106 | 8.7e-22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 307, 584 |
| AccI | GTMKAC | 1 cut(s) | 295 |
| AclWI | GGATC | 1 cut(s) | 487 |
| AcoI | YGGCCR | 2 cut(s) | 416, 687 |
| AcsI | RAATTY | 2 cut(s) | 231, 747 |
| AcuI | CTGAAG | 1 cut(s) | 723 |
| AfaI | GTAC | 3 cut(s) | 17, 341, 723 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 530 |
| AgsI | TTSAA | 3 cut(s) | 134, 546, 746 |
| AjnI | CCWGG | 3 cut(s) | 215, 523, 689 |
| AluBI | AGCT | 3 cut(s) | 138, 476, 488 |
| AluI | AGCT | 3 cut(s) | 138, 476, 488 |
| Alw26I | GTCTC | 1 cut(s) | 269 |
| AlwI | GGATC | 1 cut(s) | 487 |
| AoxI | GGCC | 2 cut(s) | 416, 687 |
| ApoI | RAATTY | 2 cut(s) | 231, 747 |
| AseI | ATTAAT | 1 cut(s) | 395 |
| AspLEI | GCGC | 1 cut(s) | 740 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| BalI | TGGCCA | 1 cut(s) | 689 |
| BciT130I | CCWGG | 3 cut(s) | 217, 525, 691 |
| BcoDI | GTCTC | 1 cut(s) | 269 |
| BfaI | CTAG | 3 cut(s) | 287, 383, 560 |
| BfuAI | ACCTGC | 2 cut(s) | 307, 584 |
| BglII | AGATCT | 2 cut(s) | 145, 175 |
| BmcAI | AGTACT | 1 cut(s) | 723 |
| Bme1390I | CCNGG | 3 cut(s) | 217, 525, 691 |
| BmrFI | CCNGG | 3 cut(s) | 217, 525, 691 |
| BmrI | ACTGGG | 1 cut(s) | 598 |
| BmsI | GCATC | 2 cut(s) | 164, 571 |
| BmuI | ACTGGG | 1 cut(s) | 598 |
| BsaJI | CCNNGG | 1 cut(s) | 216 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 530 |
| Bse1I | ACTGG | 3 cut(s) | 115, 336, 593 |
| Bse3DI | GCAATG | 1 cut(s) | 423 |
| BseBI | CCWGG | 3 cut(s) | 217, 525, 691 |
| BseDI | CCNNGG | 1 cut(s) | 216 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 530 |
| BseMI | GCAATG | 1 cut(s) | 423 |
| BseMII | CTCAG | 1 cut(s) | 494 |
| BseNI | ACTGG | 3 cut(s) | 115, 336, 593 |
| BseRI | GAGGAG | 1 cut(s) | 140 |
| BsgI | GTGCAG | 1 cut(s) | 504 |
| BshFI | GGCC | 2 cut(s) | 418, 689 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 530 |
| BsmAI | GTCTC | 1 cut(s) | 269 |
| BsmI | GAATGC | 1 cut(s) | 288 |
| BsnI | GGCC | 2 cut(s) | 418, 689 |
| Bsp143I | GATC | 3 cut(s) | 145, 175, 492 |
| BspANI | GGCC | 2 cut(s) | 418, 689 |
| BspCNI | CTCAG | 1 cut(s) | 495 |
| BspMI | ACCTGC | 2 cut(s) | 307, 584 |
| BspPI | GGATC | 1 cut(s) | 487 |
| BsrDI | GCAATG | 1 cut(s) | 423 |
| BsrI | ACTGG | 3 cut(s) | 115, 336, 593 |
| BssECI | CCNNGG | 1 cut(s) | 216 |
| BssMI | GATC | 3 cut(s) | 145, 175, 492 |
| Bst2UI | CCWGG | 3 cut(s) | 217, 525, 691 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 370 |
| BstDEI | CTNAG | 2 cut(s) | 336, 503 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 528 |
| BstHHI | GCGC | 1 cut(s) | 740 |
| BstKTI | GATC | 3 cut(s) | 148, 178, 495 |
| BstMAI | GTCTC | 1 cut(s) | 269 |
| BstMBI | GATC | 3 cut(s) | 145, 175, 492 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 590 |
| BstNI | CCWGG | 3 cut(s) | 217, 525, 691 |
| BstSCI | CCNGG | 3 cut(s) | 215, 523, 689 |
| BstX2I | RGATCY | 2 cut(s) | 145, 175 |
| BstYI | RGATCY | 2 cut(s) | 145, 175 |
| BsuRI | GGCC | 2 cut(s) | 418, 689 |
| BveI | ACCTGC | 2 cut(s) | 307, 584 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 370 |
| CfoI | GCGC | 1 cut(s) | 740 |
| Csp6I | GTAC | 3 cut(s) | 16, 340, 722 |
| CviAII | CATG | 1 cut(s) | 457 |
| CviQI | GTAC | 3 cut(s) | 16, 340, 722 |
| DdeI | CTNAG | 2 cut(s) | 336, 503 |
| DpnI | GATC | 3 cut(s) | 147, 177, 494 |
| DpnII | GATC | 3 cut(s) | 145, 175, 492 |
| DraI | TTTAAA | 1 cut(s) | 513 |
| EaeI | YGGCCR | 2 cut(s) | 416, 687 |
| Eco57I | CTGAAG | 1 cut(s) | 723 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 528 |
| EcoRII | CCWGG | 3 cut(s) | 215, 523, 689 |
| EcoT22I | ATGCAT | 1 cut(s) | 462 |
| FaeI | CATG | 1 cut(s) | 460 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 135, 167 |
| FatI | CATG | 1 cut(s) | 456 |
| FauNDI | CATATG | 2 cut(s) | 430, 480 |
| FblI | GTMKAC | 1 cut(s) | 295 |
| FspBI | CTAG | 3 cut(s) | 287, 383, 560 |
| GlaI | GCGC | 1 cut(s) | 739 |
| HaeIII | GGCC | 2 cut(s) | 418, 689 |
| HhaI | GCGC | 1 cut(s) | 740 |
| Hin1II | CATG | 1 cut(s) | 460 |
| Hin6I | GCGC | 1 cut(s) | 738 |
| HinP1I | GCGC | 1 cut(s) | 738 |
| HincII | GTYRAC | 1 cut(s) | 270 |
| HindII | GTYRAC | 1 cut(s) | 270 |
| HindIII | AAGCTT | 1 cut(s) | 136 |
| HinfI | GANTC | 2 cut(s) | 322, 448 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy166II | GTNNAC | 2 cut(s) | 270, 296 |
| Hpy188I | TCNGA | 6 cut(s) | 34, 51, 124, 160, 378, 504 |
| Hpy188III | TCNNGA | 2 cut(s) | 228, 560 |
| Hpy8I | GTNNAC | 2 cut(s) | 270, 296 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 2 cut(s) | 56, 358 |
| HpyCH4V | TGCA | 6 cut(s) | 155, 428, 434, 460, 521, 584 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 590 |
| HpyF3I | CTNAG | 2 cut(s) | 336, 503 |
| Hsp92II | CATG | 1 cut(s) | 460 |
| HspAI | GCGC | 1 cut(s) | 738 |
| Kzo9I | GATC | 3 cut(s) | 145, 175, 492 |
| LweI | GCATC | 2 cut(s) | 164, 571 |
| MaeI | CTAG | 3 cut(s) | 287, 383, 560 |
| MaeIII | GTNAC | 3 cut(s) | 601, 626, 655 |
| MalI | GATC | 3 cut(s) | 147, 177, 494 |
| MboI | GATC | 3 cut(s) | 145, 175, 492 |
| MfeI | CAATTG | 1 cut(s) | 741 |
| MflI | RGATCY | 2 cut(s) | 145, 175 |
| MlsI | TGGCCA | 1 cut(s) | 689 |
| MluCI | AATT | 7 cut(s) | 68, 105, 118, 231, 452, 741, 747 |
| MluNI | TGGCCA | 1 cut(s) | 689 |
| MlyI | GAGTC | 1 cut(s) | 457 |
| MnlI | CCTC | 5 cut(s) | 118, 121, 202, 372, 498 |
| Mox20I | TGGCCA | 1 cut(s) | 689 |
| Mph1103I | ATGCAT | 1 cut(s) | 462 |
| MscI | TGGCCA | 1 cut(s) | 689 |
| MseI | TTAA | 5 cut(s) | 71, 140, 189, 395, 512 |
| Msp20I | TGGCCA | 1 cut(s) | 689 |
| MspR9I | CCNGG | 3 cut(s) | 217, 525, 691 |
| MunI | CAATTG | 1 cut(s) | 741 |
| Mva1269I | GAATGC | 1 cut(s) | 288 |
| MvaI | CCWGG | 3 cut(s) | 217, 525, 691 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 590 |
| NdeI | CATATG | 2 cut(s) | 430, 480 |
| NdeII | GATC | 3 cut(s) | 145, 175, 492 |
| NlaIII | CATG | 1 cut(s) | 460 |
| NmeAIII | GCCGAG | 1 cut(s) | 394 |
| NsiI | ATGCAT | 1 cut(s) | 462 |
| PctI | GAATGC | 1 cut(s) | 288 |
| PfeI | GAWTC | 1 cut(s) | 322 |
| PleI | GAGTC | 1 cut(s) | 456 |
| PpsI | GAGTC | 1 cut(s) | 456 |
| PshBI | ATTAAT | 1 cut(s) | 395 |
| Psp6I | CCWGG | 3 cut(s) | 215, 523, 689 |
| PspGI | CCWGG | 3 cut(s) | 215, 523, 689 |
| PsuI | RGATCY | 2 cut(s) | 145, 175 |
| RsaI | GTAC | 3 cut(s) | 17, 341, 723 |
| RsaNI | GTAC | 3 cut(s) | 16, 340, 722 |
| SaqAI | TTAA | 5 cut(s) | 71, 140, 189, 395, 512 |
| Sau3AI | GATC | 3 cut(s) | 145, 175, 492 |
| ScaI | AGTACT | 1 cut(s) | 723 |
| SchI | GAGTC | 1 cut(s) | 457 |
| ScrFI | CCNGG | 3 cut(s) | 217, 525, 691 |
| SfaNI | GCATC | 2 cut(s) | 164, 571 |
| Sse9I | AATT | 7 cut(s) | 68, 105, 118, 231, 452, 741, 747 |
| SspI | AATATT | 1 cut(s) | 194 |
| SspMI | CTAG | 3 cut(s) | 287, 383, 560 |
| StyD4I | CCNGG | 3 cut(s) | 215, 523, 689 |
| TasI | AATT | 7 cut(s) | 68, 105, 118, 231, 452, 741, 747 |
| TatI | WGTACW | 1 cut(s) | 721 |
| TfiI | GAWTC | 1 cut(s) | 322 |
| Tru1I | TTAA | 5 cut(s) | 71, 140, 189, 395, 512 |
| Tru9I | TTAA | 5 cut(s) | 71, 140, 189, 395, 512 |
| TspDTI | ATGAA | 2 cut(s) | 185, 445 |
| TspGWI | ACGGA | 2 cut(s) | 485, 620 |
| VspI | ATTAAT | 1 cut(s) | 395 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 528 |
| XapI | RAATTY | 2 cut(s) | 231, 747 |
| XbaI | TCTAGA | 1 cut(s) | 559 |
| XmiI | GTMKAC | 1 cut(s) | 295 |
| XspI | CTAG | 3 cut(s) | 287, 383, 560 |
| ZrmI | AGTACT | 1 cut(s) | 723 |
| Zsp2I | ATGCAT | 1 cut(s) | 462 |