FvH4_3g33123

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000071
Physical Location & Seq
Forward (+)
28554184 .. 28561749
7566 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33123.t1

Sequence Viewer

Length: 1476 bp
ATGGGGTGTGACAGTAGGTTGGCTCTCACTCCTTTTGAGCCGAGAGGTGATGACAATGAGGAAATTCAGAGGTTACAAGATTTGTTGTCTTCTGAATTTGAGATGAAAGATTTGGGTAGTTTGAAGAATTTCTTGGGAATTGAAGTTGCTCGTGGGAAGGGTTGTATTGTGCTAAGTCAGAGAAAATATGTCCTAGATTTGTTAGCAGAAACGGGCATGCTTGACTGTAAACCAGCTGATACTCCTATTGAACAAAATCATCGGTTAGCAAAGTATTTGGATCAAGTGCCTACAAATAAGGCACGATATCAGAGATTAGTTGGCCGGTTAATTTATTTGTCTCACACCAGACCAGATTTAGCCTATGCAGTTAGTGTTGTGAGTCAGTTTATGCATAATCCTAGTGAAGCTCATATGGAAGCTGTATTTCATATTTTGAAGTATTTGAAGTATGCTCCAGGGAAGGGATTAATCTTTTCAAAACACAGGCACTTGGATGTTTCTAGGTACACAGACGCAGACTGGGCATGTAATATTACAGATCGTAGGTCTACTTCAGGATACTTCACTTTCATTGGTGGTAATTTGGTTACTTGGAAAAGTAAGAAGCAAAAGGTGGTAGCTCGCTCCAGTGCTGAAACAGAGTATCGTGGAATAGCTCCTAGAGTATGTGAGATGTTGTGGTTGAGACACTTGTTGAGAGATTTAGGATTTAGACAAAAGAAGACGATGTCTCTATATTGTGATAATAAAGCTGCTGTTCAAATTGCTCATAATTCAATTCAGCATGACAGAACAAAACATGTGGAGGTCGATAGACATTTCATTAAGGAGAAGTTGGATCAACAGATTATTGTGTTCCCATTTGTACCTACTGAGGAGCAGTTGGCAGACATTCTTACGAAAGCAGTCTCTAGACTGAATCGGAGCGGCAAGAGTTTAAGGAAGATCGTCATATGCTCAACATGGATCGTCATCGCCGTCAACAAGGAGACTCTGGACATGCTCACTGCTCTCGACATGGGTGATATTCCCGGTGTCAGGCTCGAGTCCACTGAATTGCAGACTGCTCCGGTCGGGTACGGCCGCGGCGAGCCCAAAAGGTATGAATCTTGGTATTGTGTTGTTCCTTGTGAAGGAATTCTAGCAGTCACCAAGCAGATTGAAATTCTGAATTCTGGACTGGAGTGCAACAAGATTGATGCGACACCTCATGGAGGTTGGTGGTCCAGCCGGAGTTGGTGGTTCGACTGGTTGGATAACCAATGTGCCGAGGAAGCTTGGGTTTCGCCGGATCTTGCTTTGGACTCCGATCTAGTTATCTGTTTGGTGAGGGGTTTGAAGTGGTGGCAAGGCGGTACTCCTGCAGCGGTGGTGGTTTGGCAGTGTAGTCCCACGCTGGTGGTGGAAGCCGGATCTCTAAGGTGCTGCTCGCCCGTGCCGGCGGAGGTTGTCGGCTCTCAAAAGGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

492

Amino Acids

55.54

Weight (kDa)

7.85

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 16 - 84 4.8e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 930
AccI GTMKAC 1 cut(s) 551
AccII CGCG 1 cut(s) 1089
AciI CCGC 6 cut(s) 930, 1087, 1089, 1356, 1370, 1445
AclWI GGATC 5 cut(s) 288, 849, 977, 1302, 1423
AcoI YGGCCR 2 cut(s) 322, 1084
AcsI RAATTY 6 cut(s) 63, 95, 127, 1140, 1167, 1174
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 4 cut(s) 509, 870, 1082, 1360
AfiI CCNNNNNNNGG 4 cut(s) 464, 1041, 1136, 1217
AflIII ACRYGT 1 cut(s) 802
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AleI CACNNNNGTG 1 cut(s) 1400
AluBI AGCT 7 cut(s) 236, 410, 422, 623, 659, 755, 1280
AluI AGCT 7 cut(s) 236, 410, 422, 623, 659, 755, 1280
Alw26I GTCTC 5 cut(s) 345, 682, 738, 916, 986
AlwI GGATC 5 cut(s) 288, 849, 977, 1302, 1423
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 2 cut(s) 322, 1084
ApeKI GCWGC 3 cut(s) 755, 1367, 1428
ApoI RAATTY 6 cut(s) 63, 95, 127, 1140, 1167, 1174
AseI ATTAAT 1 cut(s) 470
Asp700I GAANNNNTTC 2 cut(s) 128, 1140
AspS9I GGNCC 1 cut(s) 1227
AsuC2I CCSGG 1 cut(s) 1035
AsuHPI GGTGA 4 cut(s) 59, 1037, 1144, 1342
AvaI CYCGRG 1 cut(s) 1046
AvaII GGWCC 1 cut(s) 1227
BanII GRGCYC 1 cut(s) 1098
BarI GAAGNNNNNNTAC 2 cut(s) 538, 570
BauI CACGAG 1 cut(s) 150
BbsI GAAGAC 2 cut(s) 81, 731
BbvI GCAGC 3 cut(s) 742, 1379, 1415
BceAI ACGGC 2 cut(s) 965, 1099
BciT130I CCWGG 1 cut(s) 459
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 1 cut(s) 1035
BcoDI GTCTC 5 cut(s) 345, 682, 738, 916, 986
BfaI CTAG 7 cut(s) 194, 402, 504, 663, 915, 1145, 1316
BfmI CTRYAG 1 cut(s) 1365
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 6 cut(s) 756, 931, 1087, 1090, 1368, 1429
BlsI GCNGC 6 cut(s) 757, 932, 1088, 1091, 1369, 1430
Bme1390I CCNGG 2 cut(s) 459, 1035
Bme18I GGWCC 1 cut(s) 1227
BmeT110I CYCGRG 1 cut(s) 1046
BmgT120I GGNCC 1 cut(s) 1227
BmrFI CCNGG 2 cut(s) 459, 1035
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 1 cut(s) 1192
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 2 cut(s) 81, 731
BpmI CTGGAG 3 cut(s) 441, 613, 1205
BpuMI CCSGG 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 974
BsaJI CCNNGG 3 cut(s) 458, 1087, 1272
BsaWI WCCGGW 1 cut(s) 1072
Bsc4I CCNNNNNNNGG 4 cut(s) 464, 1041, 1136, 1217
Bse118I RCCGGY 2 cut(s) 324, 1441
Bse1I ACTGG 4 cut(s) 527, 630, 1188, 1256
Bse8I GATNNNNATC 1 cut(s) 974
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 3 cut(s) 458, 1087, 1272
BseGI GGATG 1 cut(s) 502
BseJI GATNNNNATC 1 cut(s) 974
BseLI CCNNNNNNNGG 4 cut(s) 464, 1041, 1136, 1217
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 4 cut(s) 527, 630, 1188, 1256
BseRI GAGGAG 1 cut(s) 893
BseX3I CGGCCG 1 cut(s) 1084
BseXI GCAGC 3 cut(s) 742, 1379, 1415
Bsh1236I CGCG 1 cut(s) 1089
Bsh1285I CGRYCG 2 cut(s) 1077, 1087
BshFI GGCC 2 cut(s) 324, 1086
BsiEI CGRYCG 2 cut(s) 1077, 1087
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 7 cut(s) 325, 1035, 1073, 1234, 1292, 1413, 1442
BslFI GGGAC 1 cut(s) 1377
BslI CCNNNNNNNGG 4 cut(s) 464, 1041, 1136, 1217
BsmAI GTCTC 5 cut(s) 345, 682, 738, 916, 986
BsmFI GGGAC 1 cut(s) 1377
BsnI GGCC 2 cut(s) 324, 1086
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 1 cut(s) 1098
Bsp143I GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
BspACI CCGC 6 cut(s) 930, 1087, 1089, 1356, 1370, 1445
BspANI GGCC 2 cut(s) 324, 1086
BspCNI CTCAG 1 cut(s) 868
BspFNI CGCG 1 cut(s) 1089
BspMAI CTGCAG 1 cut(s) 1369
BspPI GGATC 5 cut(s) 288, 849, 977, 1302, 1423
BsrBI CCGCTC 1 cut(s) 930
BsrFI RCCGGY 2 cut(s) 324, 1441
BsrI ACTGG 4 cut(s) 527, 630, 1188, 1256
BssAI RCCGGY 2 cut(s) 324, 1441
BssECI CCNNGG 3 cut(s) 458, 1087, 1272
BssMI GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 14, 227
BstC8I GCNNGC 5 cut(s) 218, 625, 1094, 1433, 1443
BstDEI CTNAG 3 cut(s) 173, 876, 1421
BstDSI CCRYGG 1 cut(s) 1087
BstENI CCTNNNNNAGG 2 cut(s) 1134, 1215
BstF5I GGATG 1 cut(s) 502
BstFNI CGCG 1 cut(s) 1089
BstKTI GATC 8 cut(s) 283, 544, 844, 951, 972, 1297, 1315, 1418
BstMAI GTCTC 5 cut(s) 345, 682, 738, 916, 986
BstMBI GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
BstMCI CGRYCG 2 cut(s) 1077, 1087
BstMWI GCNNNNNNNGC 2 cut(s) 524, 1277
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 4 cut(s) 220, 531, 806, 1006
BstSCI CCNGG 2 cut(s) 457, 1033
BstSFI CTRYAG 1 cut(s) 1365
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 3 cut(s) 742, 1379, 1415
BstV2I GAAGAC 2 cut(s) 81, 731
BstX2I RGATCY 2 cut(s) 1294, 1415
BstXI CCANNNNNNTGG 1 cut(s) 1402
BstYI RGATCY 2 cut(s) 1294, 1415
BstZI CGGCCG 1 cut(s) 1084
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 2 cut(s) 324, 1086
BtgI CCRYGG 1 cut(s) 1087
BtgZI GCGATG 1 cut(s) 961
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 2 cut(s) 1008, 1391
BtsIMutI CAGTG 4 cut(s) 637, 1008, 1053, 1391
Cac8I GCNNGC 5 cut(s) 218, 625, 1094, 1433, 1443
Cfr10I RCCGGY 2 cut(s) 324, 1441
Cfr13I GGNCC 1 cut(s) 1227
Cfr42I CCGCGG 1 cut(s) 1090
CseI GACGC 1 cut(s) 524
Csp6I GTAC 4 cut(s) 508, 869, 1081, 1359
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 8 cut(s) 217, 528, 788, 803, 966, 1003, 1021, 1214
CviQI GTAC 4 cut(s) 508, 869, 1081, 1359
DdeI CTNAG 3 cut(s) 173, 876, 1421
DpnI GATC 8 cut(s) 282, 543, 843, 950, 971, 1296, 1314, 1417
DpnII GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
EaeI YGGCCR 2 cut(s) 322, 1084
EagI CGGCCG 1 cut(s) 1084
EciI GGCGGA 1 cut(s) 1460
EclXI CGGCCG 1 cut(s) 1084
Eco24I GRGCYC 1 cut(s) 1098
Eco32I GATATC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 1227
Eco52I CGGCCG 1 cut(s) 1084
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 1046
EcoNI CCTNNNNNAGG 2 cut(s) 1134, 1215
EcoRI GAATTC 2 cut(s) 1140, 1174
EcoRII CCWGG 1 cut(s) 457
EcoRV GATATC 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 1098
FaeI CATG 8 cut(s) 220, 531, 791, 806, 969, 1006, 1024, 1217
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 1377
FatI CATG 8 cut(s) 216, 527, 787, 802, 965, 1002, 1020, 1213
FauNDI CATATG 2 cut(s) 414, 956
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 6 cut(s) 756, 931, 1087, 1090, 1368, 1429
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 6 cut(s) 756, 931, 1087, 1090, 1368, 1429
FspBI CTAG 7 cut(s) 194, 402, 504, 663, 915, 1145, 1316
GluI GCNGC 6 cut(s) 756, 931, 1087, 1090, 1368, 1429
GsuI CTGGAG 3 cut(s) 441, 613, 1205
HaeIII GGCC 2 cut(s) 324, 1086
HapII CCGG 7 cut(s) 325, 1035, 1073, 1234, 1292, 1413, 1442
HgaI GACGC 1 cut(s) 524
Hin1II CATG 8 cut(s) 220, 531, 791, 806, 969, 1006, 1024, 1217
HincII GTYRAC 2 cut(s) 985, 1471
HindII GTYRAC 2 cut(s) 985, 1471
HindIII AAGCTT 1 cut(s) 1278
HinfI GANTC 6 cut(s) 382, 922, 994, 1049, 1109, 1307
HpaII CCGG 7 cut(s) 325, 1035, 1073, 1234, 1292, 1413, 1442
HphI GGTGA 4 cut(s) 59, 1037, 1144, 1342
Hpy166II GTNNAC 6 cut(s) 230, 510, 552, 985, 1053, 1471
Hpy188I TCNGA 7 cut(s) 69, 94, 180, 312, 927, 1173, 1312
Hpy188III TCNNGA 5 cut(s) 558, 915, 998, 1016, 1179
Hpy8I GTNNAC 6 cut(s) 230, 510, 552, 985, 1053, 1471
HpyAV CCTTC 3 cut(s) 151, 457, 1130
HpyCH4III ACNGT 2 cut(s) 14, 227
HpyCH4V TGCA 5 cut(s) 368, 394, 1063, 1191, 1367
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 1277
HpyF3I CTNAG 3 cut(s) 173, 876, 1421
Hsp92II CATG 8 cut(s) 220, 531, 791, 806, 969, 1006, 1024, 1217
KroI GCCGGC 1 cut(s) 1441
KroNI GCCGGC 1 cut(s) 1443
KspI CCGCGG 1 cut(s) 1090
Kzo9I GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
LmnI GCTCC 6 cut(s) 460, 632, 664, 880, 927, 1075
Lsp1109I GCAGC 3 cut(s) 742, 1379, 1415
LweI GCATC 1 cut(s) 1192
MaeI CTAG 7 cut(s) 194, 402, 504, 663, 915, 1145, 1316
MaeIII GTNAC 4 cut(s) 8, 72, 589, 1150
MalI GATC 8 cut(s) 282, 543, 843, 950, 971, 1296, 1314, 1417
MbiI CCGCTC 1 cut(s) 930
MboI GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
MboII GAAGA 4 cut(s) 81, 136, 736, 958
MflI RGATCY 2 cut(s) 1294, 1415
MhlI GDGCHC 1 cut(s) 1098
MlyI GAGTC 4 cut(s) 391, 988, 1058, 1301
MmeI TCCRAC 2 cut(s) 819, 1236
Mph1103I ATGCAT 1 cut(s) 396
MroNI GCCGGC 1 cut(s) 1441
MroXI GAANNNNTTC 2 cut(s) 128, 1140
MseI TTAA 4 cut(s) 329, 470, 828, 941
MslI CAYNNNNRTG 2 cut(s) 495, 1400
MspA1I CMGCKG 3 cut(s) 236, 1089, 1370
MspI CCGG 7 cut(s) 325, 1035, 1073, 1234, 1292, 1413, 1442
MspR9I CCNGG 2 cut(s) 459, 1035
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 2 cut(s) 524, 1277
NaeI GCCGGC 1 cut(s) 1443
NciI CCSGG 1 cut(s) 1035
NdeI CATATG 2 cut(s) 414, 956
NdeII GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
NgoMIV GCCGGC 1 cut(s) 1441
NlaIII CATG 8 cut(s) 220, 531, 791, 806, 969, 1006, 1024, 1217
NmeAIII GCCGAG 2 cut(s) 66, 1297
NmuCI GTSAC 2 cut(s) 8, 1150
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 4 cut(s) 220, 531, 806, 1006
OliI CACNNNNGTG 1 cut(s) 1400
PaeI GCATGC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 1046
PciI ACATGT 1 cut(s) 802
PcsI WCGNNNNNNNCGW 2 cut(s) 978, 1089
PdiI GCCGGC 1 cut(s) 1443
PdmI GAANNNNTTC 2 cut(s) 128, 1140
PfeI GAWTC 2 cut(s) 922, 1109
PflFI GACNNNGTC 1 cut(s) 730
PkrI GCNGC 6 cut(s) 757, 932, 1088, 1091, 1369, 1430
PleI GAGTC 4 cut(s) 390, 988, 1057, 1301
PpsI GAGTC 4 cut(s) 390, 988, 1057, 1301
PscI ACATGT 1 cut(s) 802
PshBI ATTAAT 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspPI GGNCC 1 cut(s) 1227
PspXI VCTCGAGB 1 cut(s) 1046
PstI CTGCAG 1 cut(s) 1369
PsuI RGATCY 2 cut(s) 1294, 1415
PsyI GACNNNGTC 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 4 cut(s) 509, 870, 1082, 1360
RsaNI GTAC 4 cut(s) 508, 869, 1081, 1359
RseI CAYNNNNRTG 2 cut(s) 495, 1400
SacII CCGCGG 1 cut(s) 1090
SaqAI TTAA 4 cut(s) 329, 470, 828, 941
SatI GCNGC 6 cut(s) 756, 931, 1087, 1090, 1368, 1429
Sau3AI GATC 8 cut(s) 280, 541, 841, 948, 969, 1294, 1312, 1415
Sau96I GGNCC 1 cut(s) 1227
SchI GAGTC 4 cut(s) 391, 988, 1058, 1301
ScrFI CCNGG 2 cut(s) 459, 1035
SduI GDGCHC 1 cut(s) 1098
SfaNI GCATC 1 cut(s) 1192
SfcI CTRYAG 1 cut(s) 1365
Sfr274I CTCGAG 1 cut(s) 1046
Sfr303I CCGCGG 1 cut(s) 1090
SgrBI CCGCGG 1 cut(s) 1090
SinI GGWCC 1 cut(s) 1227
SlaI CTCGAG 1 cut(s) 1046
SmiMI CAYNNNNRTG 2 cut(s) 495, 1400
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SphI GCATGC 1 cut(s) 220
SsiI CCGC 6 cut(s) 930, 1087, 1089, 1356, 1370, 1445
SspI AATATT 1 cut(s) 535
SspMI CTAG 7 cut(s) 194, 402, 504, 663, 915, 1145, 1316
StyD4I CCNGG 2 cut(s) 457, 1033
TaaI ACNGT 2 cut(s) 14, 227
TaqI TCGA 4 cut(s) 813, 1017, 1047, 1248
TauI GCSGC 3 cut(s) 933, 1089, 1092
TfiI GAWTC 2 cut(s) 922, 1109
Tru1I TTAA 4 cut(s) 329, 470, 828, 941
Tru9I TTAA 4 cut(s) 329, 470, 828, 941
TscAI CASTG 4 cut(s) 637, 1015, 1060, 1391
TseFI GTSAC 2 cut(s) 8, 1150
TseI GCWGC 3 cut(s) 755, 1367, 1428
Tsp45I GTSAC 2 cut(s) 8, 1150
TspDTI ATGAA 5 cut(s) 119, 419, 562, 814, 1122
TspRI CASTG 4 cut(s) 637, 1015, 1060, 1391
Tth111I GACNNNGTC 1 cut(s) 730
VpaK11BI GGWCC 1 cut(s) 1227
VspI ATTAAT 1 cut(s) 470
XagI CCTNNNNNAGG 2 cut(s) 1134, 1215
XapI RAATTY 6 cut(s) 63, 95, 127, 1140, 1167, 1174
XbaI TCTAGA 1 cut(s) 914
XceI RCATGY 4 cut(s) 220, 531, 806, 1006
XcmI CCANNNNNNNNNTGG 1 cut(s) 1402
XhoI CTCGAG 1 cut(s) 1046
XmiI GTMKAC 1 cut(s) 551
XmnI GAANNNNTTC 2 cut(s) 128, 1140
XspI CTAG 7 cut(s) 194, 402, 504, 663, 915, 1145, 1316
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.