RchiOBHm_Chr7g0212421

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000071
Physical Location & Seq
Forward (+)
29700759 .. 29703054
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19007

Sequence Viewer

Length: 1794 bp
ATGTTTGTCCATCTTCGTGGCATACACAAGATGGGACATGTGACTGGAACAACCTGGATGTTTGGCGCTTCTGCTGCTGGAGACGGCGGTGAGCTAATAGTCTCAACTGGATCTGTCAAAATATCTCCTGGCTGTGTGACTTCTGCTCCTCCTGAGCTTTGTTGGCTATGGAGGCTATCAGAAAGGGGGGAGAATTCATATTTTGAAGAGCTGTATCATGGAGAAAGGGAGGAATCCGAAGGAGGTGCAGAAGTCACACAACCAGGAGGTATTTTGACAGATCCAGTTGAGACTATTAGCTCGCCGCTGTCTCCAGCCGCAGAAGCTCCAAACATCCAGGCACCAGTTTCAATCACTGAAAATGAGGTGGAAGACACAACTGCCCCTCCTGCCATCGCTTCTACCCCTGACCCACTGCTTCTTGGTACTGAACATCACCCGTTCGAGGTATGTCCATCCATTGGTACTAGTAGTAGTGAGTCTGGTGTTGAGCAATATGTGTTACCAAATAGGACCACTCGAGGTCAATCAGCCAAAAGATATGAACCTACTCTCACTGCCAAATCAAAATACCCAGTTGCCAACTATATGTCTACTAGGAGGTTGTCTAAGTCATATGAATTATTTGTGAATCAAATATCTACTGTATCAGTACCTAACAGAGTGCAGGATGCATTGGGGGATCCAAAGTGGAGAAAGGCAATGGAGGAAGAGATGGAGGCGTTGCAGAAGAACAATACTTGGAAACTTGTGCCTCCACCACAAGGCAAAAAGGCTGTAGGTTGTCGTTGGATGTTTACTGTGAAGCATAATGCAGATGGGTCAGTGAATCGGTACAAAGCACGTCTTGTAGTAAAAGGGTTTACTCAGACATATGGTATAGACTACGATGAAACATTTGCTCATGTTGTCAAGATGAACACTATTCGGGTTCTGCTCTCATTTGCTGCTAGTTTAAACTGGCCACTCCGACAGTTTGATGTCAAGAATGCATTTCTTCATGGAGAGTTAGCAGAGGAAGTGTACATGAGCCTCCCACCTGGACCTGTTGATACTCCTATTGAGCAGAACCATTGTTTAGCTGAGTATCCAAATCAAGTACCTACTGATCGAGCTCGCTATCAGAGGTTGGTTGGGCGCTTGATTTATTTGGCTCATACTAGACCAGATGTTGCGTATGCAGTAAGTGTGGTGAGTCAGTTCATGCATAACCCGAGTGAGAGTCACATGGATGCTGTTATGCGAATTTTGAAGTACTTGACGTCAGCTCCAGGAAGGGGAGTGATGTTTTCTAAACACAACAACATTCTTGAGGTTTGTGGCTTCACAGATGCAGATTGGGCTGGAAATATTACAGACAGGAGATCGACATCAGGTTACTTTACCTTTGTGGGAGGTAATTTGGTTACATGGAAGAGTAAGAAACAGAAAGTTGTGGCACGTTCTAGTGCTGAGGCCGAGTATAGAGGTATGGCTCACGGAGTGTGTGAATTGTTGTGGCTGAGAAATCTATTACGTGATCTGGGTTTCAAACTCAAAAGTACCATGCAGTTGTATTGTGACAACAAGGCAGCTATTGACATATCACAGAATCTAGTGCAGCATGATCGTACTAAGCATGTGGAGGTTGATCGTCACTTTATAAAGGAGAAGCTAGATGCCAAAATTATGAGCTTTCCTTTTGTTCCAACTGAAGAGCAACTTGCAGATATACTTACCAAAGGAGTTTCCAGGAAGGCGTTTTATGACTCACTAAGCAAGTTGGGCATGGTTGATGTATATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

597

Amino Acids

66.51

Weight (kDa)

6.82

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 245 - 349 1e-33 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1643
AatII GACGTC 1 cut(s) 1265
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 1 cut(s) 461
AccI GTMKAC 1 cut(s) 593
AciI CCGC 3 cut(s) 87, 305, 318
AclWI GGATC 4 cut(s) 118, 275, 677, 690
AcoI YGGCCR 1 cut(s) 962
AcsI RAATTY 2 cut(s) 193, 1245
AcuI CTGAAG 1 cut(s) 1713
AcyI GRCGYC 1 cut(s) 1262
AdeI CACNNNGTG 1 cut(s) 1483
AfaI GTAC 9 cut(s) 427, 466, 654, 836, 1025, 1101, 1256, 1543, 1612
AfiI CCNNNNNNNGG 4 cut(s) 445, 461, 764, 1277
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 4 cut(s) 206, 351, 1252, 1531
AhlI ACTAGT 1 cut(s) 467
AjiI CACGTC 1 cut(s) 845
AjnI CCWGG 7 cut(s) 53, 127, 262, 336, 1039, 1270, 1730
Alw21I GWGCWC 1 cut(s) 1117
Alw26I GTCTC 4 cut(s) 75, 106, 284, 315
AlwI GGATC 4 cut(s) 118, 275, 677, 690
Ama87I CYCGRG 2 cut(s) 519, 1213
AoxI GGCC 2 cut(s) 962, 1455
ApeKI GCWGC 4 cut(s) 74, 947, 1571, 1600
ApoI RAATTY 2 cut(s) 193, 1245
AspLEI GCGC 3 cut(s) 68, 1140, 1786
AspS9I GGNCC 2 cut(s) 513, 1043
AsuHPI GGTGA 3 cut(s) 101, 428, 1204
AvaI CYCGRG 2 cut(s) 519, 1213
AvaII GGWCC 2 cut(s) 513, 1043
BalI TGGCCA 1 cut(s) 964
BamHI GGATCC 1 cut(s) 682
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 1117
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 1117
BbvCI CCTCAGC 1 cut(s) 1452
BbvI GCAGC 4 cut(s) 61, 934, 1583, 1612
BccI CCATC 6 cut(s) 18, 25, 401, 463, 709, 812
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 4 cut(s) 227, 261, 1589, 1623
BciT130I CCWGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
BciVI GTATCC 1 cut(s) 1098
BcoDI GTCTC 4 cut(s) 75, 106, 284, 315
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 7 cut(s) 468, 597, 951, 1161, 1446, 1595, 1655
BfmI CTRYAG 1 cut(s) 777
BfoI RGCGCY 2 cut(s) 69, 1141
BfuI GTATCC 1 cut(s) 1098
BisI GCNGC 6 cut(s) 75, 305, 318, 948, 1572, 1601
BlsI GCNGC 6 cut(s) 76, 306, 319, 949, 1573, 1602
BmcAI AGTACT 1 cut(s) 1256
Bme1390I CCNGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
Bme18I GGWCC 2 cut(s) 513, 1043
BmeT110I CYCGRG 2 cut(s) 519, 1213
BmgBI CACGTC 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 513, 1043
BmiI GGNNCC 2 cut(s) 342, 684
BmrFI CCNGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
BmrI ACTGGG 1 cut(s) 569
BmsI GCATC 4 cut(s) 661, 1222, 1321, 1648
BmuI ACTGGG 1 cut(s) 569
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 3 cut(s) 99, 297, 1254
Bpu10I CCTNAGC 2 cut(s) 153, 1452
BpuEI CTTGAG 1 cut(s) 1331
BsaAI YACGTR 1 cut(s) 1517
BsaBI GATNNNNATC 1 cut(s) 1369
BsaHI GRCGYC 1 cut(s) 1262
BsaXI ACNNNNNCTCC 6 cut(s) 130, 160, 370, 400, 1252, 1282
Bsc4I CCNNNNNNNGG 4 cut(s) 445, 461, 764, 1277
Bse1I ACTGG 6 cut(s) 49, 112, 284, 344, 575, 965
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 1369
BseBI CCWGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
BseGI GGATG 6 cut(s) 63, 333, 455, 676, 798, 1237
BseJI GATNNNNATC 1 cut(s) 1369
BseLI CCNNNNNNNGG 4 cut(s) 445, 461, 764, 1277
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 5 cut(s) 144, 881, 1074, 1443, 1493
BseNI ACTGG 6 cut(s) 49, 112, 284, 344, 575, 965
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 4 cut(s) 61, 934, 1583, 1612
BsgI GTGCAG 3 cut(s) 267, 686, 1619
BshFI GGCC 2 cut(s) 964, 1457
BshNI GGYRCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 1117
BsiHKCI CYCGRG 2 cut(s) 519, 1213
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 4 cut(s) 445, 461, 764, 1277
BsmAI GTCTC 4 cut(s) 75, 106, 284, 315
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 2 cut(s) 964, 1457
BsoBI CYCGRG 2 cut(s) 519, 1213
Bsp1286I GDGCHC 1 cut(s) 1117
Bsp1407I TGTACA 1 cut(s) 1023
Bsp143I GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
BspACI CCGC 3 cut(s) 87, 305, 318
BspANI GGCC 2 cut(s) 964, 1457
BspCNI CTCAG 5 cut(s) 145, 880, 1075, 1444, 1494
BspLI GGNNCC 2 cut(s) 342, 684
BspPI GGATC 4 cut(s) 118, 275, 677, 690
BspQI GCTCTTC 2 cut(s) 201, 1689
BspT107I GGYRCC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 1023
BsrI ACTGG 6 cut(s) 49, 112, 284, 344, 575, 965
BssMI GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
BssNI GRCGYC 1 cut(s) 1262
Bst2UI CCWGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
Bst4CI ACNGT 3 cut(s) 646, 802, 975
Bst6I CTCTTC 4 cut(s) 201, 705, 1409, 1689
BstACI GRCGYC 1 cut(s) 1262
BstAUI TGTACA 1 cut(s) 1023
BstBAI YACGTR 1 cut(s) 1517
BstC8I GCNNGC 2 cut(s) 302, 1117
BstDEI CTNAG 8 cut(s) 153, 609, 867, 1083, 1452, 1502, 1614, 1754
BstF5I GGATG 6 cut(s) 63, 333, 455, 676, 798, 1237
BstH2I RGCGCY 2 cut(s) 69, 1141
BstHHI GCGC 3 cut(s) 68, 1140, 1786
BstKTI GATC 8 cut(s) 113, 283, 685, 1111, 1367, 1522, 1609, 1633
BstMAI GTCTC 4 cut(s) 75, 106, 284, 315
BstMBI GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
BstMWI GCNNNNNNNGC 7 cut(s) 74, 163, 172, 323, 389, 1340, 1764
BstNI CCWGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
BstNSI RCATGY 2 cut(s) 41, 1622
BstSCI CCNGG 7 cut(s) 53, 127, 262, 336, 1039, 1270, 1730
BstSFI CTRYAG 1 cut(s) 777
BstV1I GCAGC 4 cut(s) 61, 934, 1583, 1612
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 3 cut(s) 110, 280, 682
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 3 cut(s) 110, 280, 682
BsuI GTATCC 1 cut(s) 1098
BsuRI GGCC 2 cut(s) 964, 1457
BtgZI GCGATG 1 cut(s) 379
BtrI CACGTC 1 cut(s) 845
BtsCI GGATG 6 cut(s) 63, 333, 455, 676, 798, 1237
BtsI GCAGTG 2 cut(s) 413, 555
BtsIMutI CAGTG 4 cut(s) 354, 413, 555, 831
Cac8I GCNNGC 2 cut(s) 302, 1117
CfoI GCGC 3 cut(s) 68, 1140, 1786
Cfr13I GGNCC 2 cut(s) 513, 1043
Csp6I GTAC 9 cut(s) 426, 465, 653, 835, 1024, 1100, 1255, 1542, 1611
CviQI GTAC 9 cut(s) 426, 465, 653, 835, 1024, 1100, 1255, 1542, 1611
DdeI CTNAG 8 cut(s) 153, 609, 867, 1083, 1452, 1502, 1614, 1754
DpnI GATC 8 cut(s) 112, 282, 684, 1110, 1366, 1521, 1608, 1632
DpnII GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
DraI TTTAAA 1 cut(s) 957
DraIII CACNNNGTG 1 cut(s) 1483
EaeI YGGCCR 1 cut(s) 962
Eam1104I CTCTTC 4 cut(s) 201, 705, 1409, 1689
EarI CTCTTC 4 cut(s) 201, 705, 1409, 1689
Ecl136II GAGCTC 1 cut(s) 1115
Eco24I GRGCYC 1 cut(s) 1117
Eco47I GGWCC 2 cut(s) 513, 1043
Eco53kI GAGCTC 1 cut(s) 1115
Eco57I CTGAAG 1 cut(s) 1713
Eco88I CYCGRG 2 cut(s) 519, 1213
EcoICRI GAGCTC 1 cut(s) 1115
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 7 cut(s) 53, 127, 262, 336, 1039, 1270, 1730
EcoT22I ATGCAT 3 cut(s) 676, 994, 1209
EcoT38I GRGCYC 1 cut(s) 1117
Esp3I CGTCTC 1 cut(s) 75
FalI AAGNNNNNCTT 4 cut(s) 831, 863, 1686, 1718
FaqI GGGAC 1 cut(s) 48
FauNDI CATATG 2 cut(s) 616, 874
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 6 cut(s) 75, 305, 318, 948, 1572, 1601
FokI GGATG 6 cut(s) 70, 320, 442, 683, 805, 1244
FriOI GRGCYC 1 cut(s) 1117
Fsp4HI GCNGC 6 cut(s) 75, 305, 318, 948, 1572, 1601
FspBI CTAG 7 cut(s) 468, 597, 951, 1161, 1446, 1595, 1655
GlaI GCGC 3 cut(s) 67, 1139, 1785
GluI GCNGC 6 cut(s) 75, 305, 318, 948, 1572, 1601
GsuI CTGGAG 3 cut(s) 99, 297, 1254
HaeII RGCGCY 2 cut(s) 69, 1141
HaeIII GGCC 2 cut(s) 964, 1457
HhaI GCGC 3 cut(s) 68, 1140, 1786
Hin1I GRCGYC 1 cut(s) 1262
Hin6I GCGC 3 cut(s) 66, 1138, 1784
HinP1I GCGC 3 cut(s) 66, 1138, 1784
HinfI GANTC 8 cut(s) 233, 479, 631, 829, 1195, 1222, 1591, 1748
HphI GGTGA 3 cut(s) 101, 428, 1204
Hpy166II GTNNAC 4 cut(s) 594, 798, 864, 1024
Hpy188I TCNGA 5 cut(s) 181, 238, 870, 971, 1125
Hpy188III TCNNGA 4 cut(s) 152, 913, 985, 1310
Hpy8I GTNNAC 4 cut(s) 594, 798, 864, 1024
HpyAV CCTTC 3 cut(s) 233, 1269, 1729
HpyCH4III ACNGT 3 cut(s) 646, 802, 975
HpyCH4IV ACGT 4 cut(s) 844, 1262, 1441, 1516
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 163, 172, 323, 389, 1340, 1764
HpyF3I CTNAG 8 cut(s) 153, 609, 867, 1083, 1452, 1502, 1614, 1754
HpySE526I ACGT 4 cut(s) 844, 1262, 1441, 1516
Hsp92I GRCGYC 1 cut(s) 1262
HspAI GCGC 3 cut(s) 66, 1138, 1784
Kzo9I GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
LguI GCTCTTC 2 cut(s) 201, 1689
LmnI GCTCC 3 cut(s) 151, 331, 1273
Lsp1109I GCAGC 4 cut(s) 61, 934, 1583, 1612
LweI GCATC 4 cut(s) 661, 1222, 1321, 1648
MaeI CTAG 7 cut(s) 468, 597, 951, 1161, 1446, 1595, 1655
MaeII ACGT 4 cut(s) 844, 1262, 1441, 1516
MaeIII GTNAC 9 cut(s) 40, 136, 253, 501, 1223, 1376, 1405, 1559, 1634
MalI GATC 8 cut(s) 112, 282, 684, 1110, 1366, 1521, 1608, 1632
MboI GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
MboII GAAGA 8 cut(s) 5, 218, 383, 722, 742, 989, 1426, 1706
MflI RGATCY 3 cut(s) 110, 280, 682
MhlI GDGCHC 1 cut(s) 1117
MlsI TGGCCA 1 cut(s) 964
MluCI AATT 6 cut(s) 193, 620, 1245, 1399, 1490, 1665
MluNI TGGCCA 1 cut(s) 964
MlyI GAGTC 4 cut(s) 488, 1204, 1231, 1742
MmeI TCCRAC 3 cut(s) 770, 994, 1712
Mox20I TGGCCA 1 cut(s) 964
Mph1103I ATGCAT 3 cut(s) 676, 994, 1209
MscI TGGCCA 1 cut(s) 964
MseI TTAA 1 cut(s) 956
MslI CAYNNNNRTG 2 cut(s) 15, 1230
Msp20I TGGCCA 1 cut(s) 964
MspA1I CMGCKG 1 cut(s) 307
MspR9I CCNGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
MssI GTTTAAAC 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
MwoI GCNNNNNNNGC 7 cut(s) 74, 163, 172, 323, 389, 1340, 1764
NdeI CATATG 2 cut(s) 616, 874
NdeII GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
NlaIV GGNNCC 2 cut(s) 342, 684
NmeAIII GCCGAG 1 cut(s) 1483
NmuCI GTSAC 6 cut(s) 40, 136, 253, 1223, 1559, 1634
NsiI ATGCAT 3 cut(s) 676, 994, 1209
NspI RCATGY 2 cut(s) 41, 1622
PaeR7I CTCGAG 1 cut(s) 519
PciI ACATGT 1 cut(s) 37
PciSI GCTCTTC 2 cut(s) 201, 1689
PctI GAATGC 1 cut(s) 994
PfeI GAWTC 4 cut(s) 233, 631, 829, 1591
PflMI CCANNNNNTGG 1 cut(s) 461
PfoI TCCNGGA 2 cut(s) 1270, 1730
PkrI GCNGC 6 cut(s) 76, 306, 319, 949, 1573, 1602
PleI GAGTC 4 cut(s) 487, 1203, 1230, 1742
PmeI GTTTAAAC 1 cut(s) 957
PpsI GAGTC 4 cut(s) 487, 1203, 1230, 1742
Ppu21I YACGTR 1 cut(s) 1517
PscI ACATGT 1 cut(s) 37
PsiI TTATAA 1 cut(s) 1643
Psp124BI GAGCTC 1 cut(s) 1117
Psp6I CCWGG 7 cut(s) 53, 127, 262, 336, 1039, 1270, 1730
PspGI CCWGG 7 cut(s) 53, 127, 262, 336, 1039, 1270, 1730
PspN4I GGNNCC 2 cut(s) 342, 684
PspPI GGNCC 2 cut(s) 513, 1043
PspXI VCTCGAGB 1 cut(s) 519
PsuI RGATCY 3 cut(s) 110, 280, 682
RsaI GTAC 9 cut(s) 427, 466, 654, 836, 1025, 1101, 1256, 1543, 1612
RsaNI GTAC 9 cut(s) 426, 465, 653, 835, 1024, 1100, 1255, 1542, 1611
RseI CAYNNNNRTG 2 cut(s) 15, 1230
SacI GAGCTC 1 cut(s) 1117
SapI GCTCTTC 2 cut(s) 201, 1689
SaqAI TTAA 1 cut(s) 956
SatI GCNGC 6 cut(s) 75, 305, 318, 948, 1572, 1601
Sau3AI GATC 8 cut(s) 110, 280, 682, 1108, 1364, 1519, 1606, 1630
Sau96I GGNCC 2 cut(s) 513, 1043
ScaI AGTACT 1 cut(s) 1256
SchI GAGTC 4 cut(s) 488, 1204, 1231, 1742
ScrFI CCNGG 7 cut(s) 55, 129, 264, 338, 1041, 1272, 1732
SduI GDGCHC 1 cut(s) 1117
SfaNI GCATC 4 cut(s) 661, 1222, 1321, 1648
SfcI CTRYAG 1 cut(s) 777
Sfr274I CTCGAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 513, 1043
SlaI CTCGAG 1 cut(s) 519
SmiMI CAYNNNNRTG 2 cut(s) 15, 1230
SmlI CTYRAG 2 cut(s) 519, 1310
SmoI CTYRAG 2 cut(s) 519, 1310
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 6 cut(s) 193, 620, 1245, 1399, 1490, 1665
SsiI CCGC 3 cut(s) 87, 305, 318
SspI AATATT 1 cut(s) 1351
SspMI CTAG 7 cut(s) 468, 597, 951, 1161, 1446, 1595, 1655
SstI GAGCTC 1 cut(s) 1117
StyD4I CCNGG 7 cut(s) 53, 127, 262, 336, 1039, 1270, 1730
TaaI ACNGT 3 cut(s) 646, 802, 975
TaiI ACGT 4 cut(s) 847, 1265, 1444, 1519
TaqI TCGA 4 cut(s) 444, 520, 1111, 1367
TasI AATT 6 cut(s) 193, 620, 1245, 1399, 1490, 1665
TatI WGTACW 2 cut(s) 1023, 1254
TauI GCSGC 2 cut(s) 307, 320
TfiI GAWTC 4 cut(s) 233, 631, 829, 1591
Tru1I TTAA 1 cut(s) 956
Tru9I TTAA 1 cut(s) 956
TscAI CASTG 4 cut(s) 361, 420, 562, 831
TseFI GTSAC 6 cut(s) 40, 136, 253, 1223, 1559, 1634
TseI GCWGC 4 cut(s) 74, 947, 1571, 1600
Tsp45I GTSAC 6 cut(s) 40, 136, 253, 1223, 1559, 1634
TspDTI ATGAA 7 cut(s) 186, 558, 633, 906, 932, 989, 1192
TspGWI ACGGA 1 cut(s) 1494
TspRI CASTG 4 cut(s) 361, 420, 562, 831
Van91I CCANNNNNTGG 1 cut(s) 461
VpaK11BI GGWCC 2 cut(s) 513, 1043
XapI RAATTY 2 cut(s) 193, 1245
XceI RCATGY 2 cut(s) 41, 1622
XhoI CTCGAG 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 593
XspI CTAG 7 cut(s) 468, 597, 951, 1161, 1446, 1595, 1655
ZraI GACGTC 1 cut(s) 1263
ZrmI AGTACT 1 cut(s) 1256
Zsp2I ATGCAT 3 cut(s) 676, 994, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.