gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 74 - 145 | 2e-15 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 179 - 238 | 3.4e-08 | GAG-pre-integrase domain |
| rve | PF00665 | 256 - 349 | 6.6e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 423 - 484 | 1.8e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 615 - 856 | 8.7e-78 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 105 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 543 |
| Acc36I | ACCTGC | 1 cut(s) | 105 |
| Acc65I | GGTACC | 1 cut(s) | 1673 |
| AccB1I | GGYRCC | 2 cut(s) | 1673, 1861 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2829 |
| AccI | GTMKAC | 1 cut(s) | 1283 |
| AccII | CGCG | 1 cut(s) | 2001 |
| AciI | CCGC | 5 cut(s) | 1158, 1999, 2876, 3064, 3142 |
| AclI | AACGTT | 1 cut(s) | 1220 |
| AclWI | GGATC | 3 cut(s) | 217, 230, 1307 |
| AcoI | YGGCCR | 3 cut(s) | 91, 1571, 2019 |
| AcsI | RAATTY | 3 cut(s) | 79, 115, 980 |
| AcuI | CTGAAG | 1 cut(s) | 117 |
| AcvI | CACGTG | 1 cut(s) | 1504 |
| AcyI | GRCGYC | 1 cut(s) | 1059 |
| AfaI | GTAC | 7 cut(s) | 301, 322, 1675, 2135, 2447, 2882, 3075 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 499, 563, 1139, 2156, 2699, 2720, 2829, 3210 |
| AflIII | ACRYGT | 2 cut(s) | 22, 331 |
| AjiI | CACGTC | 1 cut(s) | 799 |
| AjnI | CCWGG | 2 cut(s) | 2149, 2692 |
| Alw21I | GWGCWC | 5 cut(s) | 53, 174, 294, 1105, 2254 |
| Alw26I | GTCTC | 6 cut(s) | 551, 1408, 1997, 2384, 2662, 2862 |
| Alw44I | GTGCAC | 2 cut(s) | 290, 1101 |
| AlwI | GGATC | 3 cut(s) | 217, 230, 1307 |
| Ama87I | CYCGRG | 1 cut(s) | 175 |
| AoxI | GGCC | 5 cut(s) | 91, 1298, 1571, 2019, 2206 |
| ApaLI | GTGCAC | 2 cut(s) | 290, 1101 |
| ApeKI | GCWGC | 4 cut(s) | 1160, 1616, 2057, 2261 |
| ApoI | RAATTY | 3 cut(s) | 79, 115, 980 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1177, 1209, 1840, 1872 |
| Asp718I | GGTACC | 1 cut(s) | 1673 |
| AspA2I | CCTAGG | 1 cut(s) | 2539 |
| AspLEI | GCGC | 2 cut(s) | 1071, 2546 |
| AspS9I | GGNCC | 5 cut(s) | 490, 974, 1299, 2472, 2518 |
| AsuHPI | GGTGA | 7 cut(s) | 20, 448, 592, 1147, 2126, 2606, 3127 |
| AsuII | TTCGAA | 3 cut(s) | 2923, 3106, 3152 |
| AvaI | CYCGRG | 1 cut(s) | 175 |
| AvaII | GGWCC | 4 cut(s) | 490, 974, 2472, 2518 |
| AvrII | CCTAGG | 1 cut(s) | 2539 |
| BaeGI | GKGCMC | 4 cut(s) | 294, 820, 1105, 2764 |
| BalI | TGGCCA | 2 cut(s) | 93, 2021 |
| BamHI | GGATCC | 1 cut(s) | 222 |
| BanI | GGYRCC | 2 cut(s) | 1673, 1861 |
| BanII | GRGCYC | 2 cut(s) | 53, 174 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2773, 2805 |
| BauI | CACGAG | 5 cut(s) | 1098, 1407, 1651, 2665, 2678 |
| BbrPI | CACGTG | 1 cut(s) | 1504 |
| BbsI | GAAGAC | 2 cut(s) | 727, 3010 |
| Bbv12I | GWGCWC | 5 cut(s) | 53, 174, 294, 1105, 2254 |
| BbvI | GCAGC | 4 cut(s) | 1147, 1628, 2069, 2248 |
| BceAI | ACGGC | 1 cut(s) | 1586 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1991, 2025 |
| BciT130I | CCWGG | 2 cut(s) | 2151, 2694 |
| BclI | TGATCA | 2 cut(s) | 844, 2569 |
| BcoDI | GTCTC | 6 cut(s) | 551, 1408, 1997, 2384, 2662, 2862 |
| BfmI | CTRYAG | 1 cut(s) | 1375 |
| BfoI | RGCGCY | 1 cut(s) | 2547 |
| BfuAI | ACCTGC | 1 cut(s) | 105 |
| BglII | AGATCT | 2 cut(s) | 1769, 2885 |
| BisI | GCNGC | 5 cut(s) | 1161, 1617, 2058, 2262, 3143 |
| BlnI | CCTAGG | 1 cut(s) | 2539 |
| BlpI | GCTNAGC | 1 cut(s) | 1065 |
| BlsI | GCNGC | 5 cut(s) | 1162, 1618, 2059, 2263, 3144 |
| Bme1390I | CCNGG | 2 cut(s) | 2151, 2694 |
| Bme18I | GGWCC | 4 cut(s) | 490, 974, 2472, 2518 |
| BmeT110I | CYCGRG | 1 cut(s) | 175 |
| BmgBI | CACGTC | 1 cut(s) | 799 |
| BmgT120I | GGNCC | 5 cut(s) | 490, 974, 1299, 2472, 2518 |
| BmiI | GGNNCC | 4 cut(s) | 224, 1675, 1764, 1863 |
| BmrFI | CCNGG | 2 cut(s) | 2151, 2694 |
| BoxI | GACNNNNGTC | 1 cut(s) | 972 |
| BpiI | GAAGAC | 2 cut(s) | 727, 3010 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 158, 190, 2031, 2063 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1065 |
| Bpu14I | TTCGAA | 3 cut(s) | 2923, 3106, 3152 |
| BpuEI | CTTGAG | 4 cut(s) | 2195, 2240, 2298, 3229 |
| BsaAI | YACGTR | 2 cut(s) | 1504, 2916 |
| BsaHI | GRCGYC | 1 cut(s) | 1059 |
| BsaI | GGTCTC | 1 cut(s) | 2662 |
| BsaJI | CCNNGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| BsaWI | WCCGGW | 2 cut(s) | 2014, 2720 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1567, 1597, 1996, 2026, 3185, 3215 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 499, 563, 1139, 2156, 2699, 2720, 2829, 3210 |
| Bse1I | ACTGG | 3 cut(s) | 1029, 2364, 2797 |
| Bse3DI | GCAATG | 5 cut(s) | 580, 682, 1092, 1544, 1592 |
| BseBI | CCWGG | 2 cut(s) | 2151, 2694 |
| BseDI | CCNNGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| BseGI | GGATG | 5 cut(s) | 513, 622, 1150, 1288, 2620 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 499, 563, 1139, 2156, 2699, 2720, 2829, 3210 |
| BseMI | GCAATG | 5 cut(s) | 580, 682, 1092, 1544, 1592 |
| BseMII | CTCAG | 6 cut(s) | 1056, 1317, 1422, 1793, 2062, 2636 |
| BseNI | ACTGG | 3 cut(s) | 1029, 2364, 2797 |
| BseRI | GAGGAG | 2 cut(s) | 182, 1482 |
| BseSI | GKGCMC | 4 cut(s) | 294, 820, 1105, 2764 |
| BseXI | GCAGC | 4 cut(s) | 1147, 1628, 2069, 2248 |
| BseYI | CCCAGC | 2 cut(s) | 1301, 3145 |
| BsgI | GTGCAG | 2 cut(s) | 1620, 2889 |
| Bsh1236I | CGCG | 1 cut(s) | 2001 |
| BshFI | GGCC | 5 cut(s) | 93, 1300, 1573, 2021, 2208 |
| BshNI | GGYRCC | 2 cut(s) | 1673, 1861 |
| BsiHKAI | GWGCWC | 5 cut(s) | 53, 174, 294, 1105, 2254 |
| BsiHKCI | CYCGRG | 1 cut(s) | 175 |
| BsiSI | CCGG | 3 cut(s) | 2015, 2265, 2721 |
| BslFI | GGGAC | 5 cut(s) | 361, 380, 529, 549, 785 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 499, 563, 1139, 2156, 2699, 2720, 2829, 3210 |
| BsmAI | GTCTC | 6 cut(s) | 551, 1408, 1997, 2384, 2662, 2862 |
| BsmFI | GGGAC | 5 cut(s) | 361, 380, 529, 549, 785 |
| BsnI | GGCC | 5 cut(s) | 93, 1300, 1573, 2021, 2208 |
| Bso31I | GGTCTC | 1 cut(s) | 2662 |
| BsoBI | CYCGRG | 1 cut(s) | 175 |
| Bsp119I | TTCGAA | 3 cut(s) | 2923, 3106, 3152 |
| Bsp1286I | GDGCHC | 7 cut(s) | 53, 174, 294, 820, 1105, 2254, 2764 |
| Bsp1407I | TGTACA | 1 cut(s) | 2133 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1065 |
| Bsp19I | CCATGG | 1 cut(s) | 71 |
| BspACI | CCGC | 5 cut(s) | 1158, 1999, 2876, 3064, 3142 |
| BspANI | GGCC | 5 cut(s) | 93, 1300, 1573, 2021, 2208 |
| BspCNI | CTCAG | 6 cut(s) | 1057, 1318, 1423, 1792, 2061, 2635 |
| BspFNI | CGCG | 1 cut(s) | 2001 |
| BspLI | GGNNCC | 4 cut(s) | 224, 1675, 1764, 1863 |
| BspMI | ACCTGC | 1 cut(s) | 105 |
| BspPI | GGATC | 3 cut(s) | 217, 230, 1307 |
| BspQI | GCTCTTC | 3 cut(s) | 58, 1839, 2067 |
| BspT104I | TTCGAA | 3 cut(s) | 2923, 3106, 3152 |
| BspT107I | GGYRCC | 2 cut(s) | 1673, 1861 |
| BspTNI | GGTCTC | 1 cut(s) | 2662 |
| BsrDI | GCAATG | 5 cut(s) | 580, 682, 1092, 1544, 1592 |
| BsrGI | TGTACA | 1 cut(s) | 2133 |
| BsrI | ACTGG | 3 cut(s) | 1029, 2364, 2797 |
| BssECI | CCNNGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| BssNI | GRCGYC | 1 cut(s) | 1059 |
| BssSI | CACGAG | 5 cut(s) | 1098, 1407, 1651, 2665, 2678 |
| BssT1I | CCWWGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| Bst2BI | CACGAG | 5 cut(s) | 1098, 1407, 1651, 2665, 2678 |
| Bst2UI | CCWGG | 2 cut(s) | 2151, 2694 |
| Bst6I | CTCTTC | 5 cut(s) | 58, 1009, 1839, 2067, 2303 |
| BstACI | GRCGYC | 1 cut(s) | 1059 |
| BstAUI | TGTACA | 1 cut(s) | 2133 |
| BstBAI | YACGTR | 2 cut(s) | 1504, 2916 |
| BstBI | TTCGAA | 3 cut(s) | 2923, 3106, 3152 |
| BstC8I | GCNNGC | 2 cut(s) | 2217, 2533 |
| BstDEI | CTNAG | 7 cut(s) | 1065, 1326, 1431, 1779, 2048, 2622, 2809 |
| BstDSI | CCRYGG | 1 cut(s) | 71 |
| BstEII | GGTNACC | 2 cut(s) | 1343, 2114 |
| BstF5I | GGATG | 5 cut(s) | 513, 622, 1150, 1288, 2620 |
| BstFNI | CGCG | 1 cut(s) | 2001 |
| BstH2I | RGCGCY | 1 cut(s) | 2547 |
| BstHHI | GCGC | 2 cut(s) | 1071, 2546 |
| BstMAI | GTCTC | 6 cut(s) | 551, 1408, 1997, 2384, 2662, 2862 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 613, 2018, 2258, 2541, 2759 |
| BstNI | CCWGG | 2 cut(s) | 2151, 2694 |
| BstNSI | RCATGY | 5 cut(s) | 26, 335, 2904, 2957, 2963 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 972 |
| BstPI | GGTNACC | 2 cut(s) | 1343, 2114 |
| BstSCI | CCNGG | 2 cut(s) | 2149, 2692 |
| BstSFI | CTRYAG | 1 cut(s) | 1375 |
| BstSLI | GKGCMC | 4 cut(s) | 294, 820, 1105, 2764 |
| BstUI | CGCG | 1 cut(s) | 2001 |
| BstV1I | GCAGC | 4 cut(s) | 1147, 1628, 2069, 2248 |
| BstV2I | GAAGAC | 2 cut(s) | 727, 3010 |
| BstX2I | RGATCY | 3 cut(s) | 222, 1769, 2885 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1055, 3145 |
| BstYI | RGATCY | 3 cut(s) | 222, 1769, 2885 |
| BsuRI | GGCC | 5 cut(s) | 93, 1300, 1573, 2021, 2208 |
| BtgI | CCRYGG | 1 cut(s) | 71 |
| BtrI | CACGTC | 1 cut(s) | 799 |
| BtsCI | GGATG | 5 cut(s) | 513, 622, 1150, 1288, 2620 |
| BtsI | GCAGTG | 1 cut(s) | 2234 |
| BtsIMutI | CAGTG | 7 cut(s) | 238, 309, 357, 1737, 2205, 2234, 2859 |
| BveI | ACCTGC | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 2 cut(s) | 2217, 2533 |
| CfoI | GCGC | 2 cut(s) | 1071, 2546 |
| Cfr13I | GGNCC | 5 cut(s) | 490, 974, 1299, 2472, 2518 |
| CseI | GACGC | 1 cut(s) | 1048 |
| Csp6I | GTAC | 7 cut(s) | 300, 321, 1674, 2134, 2446, 2881, 3074 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 236, 271 |
| CviQI | GTAC | 7 cut(s) | 300, 321, 1674, 2134, 2446, 2881, 3074 |
| DdeI | CTNAG | 7 cut(s) | 1065, 1326, 1431, 1779, 2048, 2622, 2809 |
| DraI | TTTAAA | 2 cut(s) | 985, 2610 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 543 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 543 |
| EaeI | YGGCCR | 3 cut(s) | 91, 1571, 2019 |
| Eam1104I | CTCTTC | 5 cut(s) | 58, 1009, 1839, 2067, 2303 |
| EarI | CTCTTC | 5 cut(s) | 58, 1009, 1839, 2067, 2303 |
| Ecl136II | GAGCTC | 2 cut(s) | 51, 172 |
| Eco130I | CCWWGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| Eco24I | GRGCYC | 2 cut(s) | 53, 174 |
| Eco31I | GGTCTC | 1 cut(s) | 2662 |
| Eco47I | GGWCC | 4 cut(s) | 490, 974, 2472, 2518 |
| Eco53kI | GAGCTC | 2 cut(s) | 51, 172 |
| Eco57I | CTGAAG | 1 cut(s) | 117 |
| Eco72I | CACGTG | 1 cut(s) | 1504 |
| Eco88I | CYCGRG | 1 cut(s) | 175 |
| Eco91I | GGTNACC | 2 cut(s) | 1343, 2114 |
| EcoICRI | GAGCTC | 2 cut(s) | 51, 172 |
| EcoO109I | RGGNCCY | 2 cut(s) | 490, 2518 |
| EcoO65I | GGTNACC | 2 cut(s) | 1343, 2114 |
| EcoRI | GAATTC | 2 cut(s) | 79, 115 |
| EcoRII | CCWGG | 2 cut(s) | 2149, 2692 |
| EcoT14I | CCWWGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| EcoT22I | ATGCAT | 2 cut(s) | 879, 2512 |
| EcoT38I | GRGCYC | 2 cut(s) | 53, 174 |
| ErhI | CCWWGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2691, 2723 |
| FaqI | GGGAC | 5 cut(s) | 361, 380, 529, 549, 785 |
| FauI | CCCGC | 1 cut(s) | 3057 |
| FauNDI | CATATG | 2 cut(s) | 782, 3239 |
| FbaI | TGATCA | 2 cut(s) | 844, 2569 |
| FblI | GTMKAC | 1 cut(s) | 1283 |
| Fnu4HI | GCNGC | 5 cut(s) | 1161, 1617, 2058, 2262, 3143 |
| FokI | GGATG | 5 cut(s) | 520, 609, 1157, 1275, 2627 |
| FriOI | GRGCYC | 2 cut(s) | 53, 174 |
| Fsp4HI | GCNGC | 5 cut(s) | 1161, 1617, 2058, 2262, 3143 |
| GlaI | GCGC | 2 cut(s) | 1070, 2545 |
| GluI | GCNGC | 5 cut(s) | 1161, 1617, 2058, 2262, 3143 |
| GsaI | CCCAGC | 2 cut(s) | 1305, 3149 |
| HaeII | RGCGCY | 1 cut(s) | 2547 |
| HaeIII | GGCC | 5 cut(s) | 93, 1300, 1573, 2021, 2208 |
| HapII | CCGG | 3 cut(s) | 2015, 2265, 2721 |
| HgaI | GACGC | 1 cut(s) | 1048 |
| HhaI | GCGC | 2 cut(s) | 1071, 2546 |
| Hin1I | GRCGYC | 1 cut(s) | 1059 |
| Hin6I | GCGC | 2 cut(s) | 1069, 2544 |
| HinP1I | GCGC | 2 cut(s) | 1069, 2544 |
| HincII | GTYRAC | 3 cut(s) | 1744, 2095, 2347 |
| HindII | GTYRAC | 3 cut(s) | 1744, 2095, 2347 |
| HindIII | AAGCTT | 2 cut(s) | 1731, 2988 |
| HpaI | GTTAAC | 1 cut(s) | 1744 |
| HpaII | CCGG | 3 cut(s) | 2015, 2265, 2721 |
| HphI | GGTGA | 7 cut(s) | 20, 448, 592, 1147, 2126, 2606, 3127 |
| Hpy188I | TCNGA | 7 cut(s) | 620, 889, 1026, 2159, 2287, 2306, 2574 |
| Hpy188III | TCNNGA | 6 cut(s) | 852, 977, 1407, 1838, 2556, 2665 |
| Hpy99I | CGWCG | 1 cut(s) | 1064 |
| HpyAV | CCTTC | 9 cut(s) | 141, 386, 503, 1479, 1631, 1635, 2591, 2637, 2724 |
| HpyCH4IV | ACGT | 6 cut(s) | 569, 798, 1220, 1503, 2764, 2915 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 613, 2018, 2258, 2541, 2759 |
| HpyF3I | CTNAG | 7 cut(s) | 1065, 1326, 1431, 1779, 2048, 2622, 2809 |
| HpySE526I | ACGT | 6 cut(s) | 569, 798, 1220, 1503, 2764, 2915 |
| Hsp92I | GRCGYC | 1 cut(s) | 1059 |
| HspAI | GCGC | 2 cut(s) | 1069, 2544 |
| KpnI | GGTACC | 1 cut(s) | 1677 |
| Ksp22I | TGATCA | 2 cut(s) | 844, 2569 |
| KspAI | GTTAAC | 1 cut(s) | 1744 |
| LguI | GCTCTTC | 3 cut(s) | 58, 1839, 2067 |
| LmnI | GCTCC | 3 cut(s) | 169, 236, 2017 |
| Lsp1109I | GCAGC | 4 cut(s) | 1147, 1628, 2069, 2248 |
| MaeII | ACGT | 6 cut(s) | 569, 798, 1220, 1503, 2764, 2915 |
| MfeI | CAATTG | 2 cut(s) | 2565, 2726 |
| MflI | RGATCY | 3 cut(s) | 222, 1769, 2885 |
| MhlI | GDGCHC | 7 cut(s) | 53, 174, 294, 820, 1105, 2254, 2764 |
| MlsI | TGGCCA | 2 cut(s) | 93, 2021 |
| MluNI | TGGCCA | 2 cut(s) | 93, 2021 |
| MlyI | GAGTC | 2 cut(s) | 531, 1707 |
| MmeI | TCCRAC | 5 cut(s) | 1508, 1610, 2329, 2620, 3228 |
| Mox20I | TGGCCA | 2 cut(s) | 93, 2021 |
| Mph1103I | ATGCAT | 2 cut(s) | 879, 2512 |
| MscI | TGGCCA | 2 cut(s) | 93, 2021 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1254, 2958 |
| Msp20I | TGGCCA | 2 cut(s) | 93, 2021 |
| MspA1I | CMGCKG | 2 cut(s) | 1160, 3125 |
| MspI | CCGG | 3 cut(s) | 2015, 2265, 2721 |
| MspR9I | CCNGG | 2 cut(s) | 2151, 2694 |
| MunI | CAATTG | 2 cut(s) | 2565, 2726 |
| MvaI | CCWGG | 2 cut(s) | 2151, 2694 |
| MvnI | CGCG | 1 cut(s) | 2001 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 613, 2018, 2258, 2541, 2759 |
| NcoI | CCATGG | 1 cut(s) | 71 |
| NdeI | CATATG | 2 cut(s) | 782, 3239 |
| NlaIV | GGNNCC | 4 cut(s) | 224, 1675, 1764, 1863 |
| NmuCI | GTSAC | 6 cut(s) | 8, 214, 242, 965, 2114, 2662 |
| NsiI | ATGCAT | 2 cut(s) | 879, 2512 |
| NspI | RCATGY | 5 cut(s) | 26, 335, 2904, 2957, 2963 |
| NspV | TTCGAA | 3 cut(s) | 2923, 3106, 3152 |
| PaqCI | CACCTGC | 1 cut(s) | 105 |
| PciI | ACATGT | 2 cut(s) | 22, 331 |
| PciSI | GCTCTTC | 3 cut(s) | 58, 1839, 2067 |
| PfeI | GAWTC | 8 cut(s) | 443, 769, 931, 1825, 2268, 2322, 2559, 3232 |
| PflFI | GACNNNGTC | 1 cut(s) | 352 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2829 |
| PkrI | GCNGC | 5 cut(s) | 1162, 1618, 2059, 2263, 3144 |
| PleI | GAGTC | 2 cut(s) | 531, 1707 |
| PmaCI | CACGTG | 1 cut(s) | 1504 |
| PmlI | CACGTG | 1 cut(s) | 1504 |
| PpsI | GAGTC | 2 cut(s) | 531, 1707 |
| Ppu21I | YACGTR | 2 cut(s) | 1504, 2916 |
| PpuMI | RGGWCCY | 2 cut(s) | 490, 2518 |
| PscI | ACATGT | 2 cut(s) | 22, 331 |
| PshAI | GACNNNNGTC | 1 cut(s) | 972 |
| Psp124BI | GAGCTC | 2 cut(s) | 53, 174 |
| Psp1406I | AACGTT | 1 cut(s) | 1220 |
| Psp5II | RGGWCCY | 2 cut(s) | 490, 2518 |
| Psp6I | CCWGG | 2 cut(s) | 2149, 2692 |
| PspCI | CACGTG | 1 cut(s) | 1504 |
| PspEI | GGTNACC | 2 cut(s) | 1343, 2114 |
| PspFI | CCCAGC | 2 cut(s) | 1301, 3145 |
| PspGI | CCWGG | 2 cut(s) | 2149, 2692 |
| PspN4I | GGNNCC | 4 cut(s) | 224, 1675, 1764, 1863 |
| PspPI | GGNCC | 5 cut(s) | 490, 974, 1299, 2472, 2518 |
| PspPPI | RGGWCCY | 2 cut(s) | 490, 2518 |
| PsuI | RGATCY | 3 cut(s) | 222, 1769, 2885 |
| PsyI | GACNNNGTC | 1 cut(s) | 352 |
| PvuII | CAGCTG | 1 cut(s) | 3125 |
| RsaI | GTAC | 7 cut(s) | 301, 322, 1675, 2135, 2447, 2882, 3075 |
| RsaNI | GTAC | 7 cut(s) | 300, 321, 1674, 2134, 2446, 2881, 3074 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1254, 2958 |
| SacI | GAGCTC | 2 cut(s) | 53, 174 |
| SapI | GCTCTTC | 3 cut(s) | 58, 1839, 2067 |
| SatI | GCNGC | 5 cut(s) | 1161, 1617, 2058, 2262, 3143 |
| Sau96I | GGNCC | 5 cut(s) | 490, 974, 1299, 2472, 2518 |
| SchI | GAGTC | 2 cut(s) | 531, 1707 |
| ScrFI | CCNGG | 2 cut(s) | 2151, 2694 |
| SduI | GDGCHC | 7 cut(s) | 53, 174, 294, 820, 1105, 2254, 2764 |
| SfcI | CTRYAG | 1 cut(s) | 1375 |
| SfuI | TTCGAA | 3 cut(s) | 2923, 3106, 3152 |
| SinI | GGWCC | 4 cut(s) | 490, 974, 2472, 2518 |
| SmiI | ATTTAAAT | 1 cut(s) | 985 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1254, 2958 |
| SmlI | CTYRAG | 4 cut(s) | 2210, 2255, 2313, 3208 |
| SmoI | CTYRAG | 4 cut(s) | 2210, 2255, 2313, 3208 |
| SsiI | CCGC | 5 cut(s) | 1158, 1999, 2876, 3064, 3142 |
| SspI | AATATT | 1 cut(s) | 824 |
| SstI | GAGCTC | 2 cut(s) | 53, 174 |
| StyD4I | CCNGG | 2 cut(s) | 2149, 2692 |
| StyI | CCWWGG | 5 cut(s) | 71, 1008, 1339, 2452, 2539 |
| SwaI | ATTTAAAT | 1 cut(s) | 985 |
| TaiI | ACGT | 6 cut(s) | 572, 801, 1223, 1506, 2767, 2918 |
| TaqI | TCGA | 8 cut(s) | 119, 1755, 2038, 2222, 2557, 2923, 3106, 3152 |
| TatI | WGTACW | 3 cut(s) | 2133, 2880, 3073 |
| TauI | GCSGC | 1 cut(s) | 3145 |
| TfiI | GAWTC | 8 cut(s) | 443, 769, 931, 1825, 2268, 2322, 2559, 3232 |
| TscAI | CASTG | 7 cut(s) | 238, 309, 357, 1744, 2205, 2234, 2859 |
| TseFI | GTSAC | 6 cut(s) | 8, 214, 242, 965, 2114, 2662 |
| TseI | GCWGC | 4 cut(s) | 1160, 1616, 2057, 2261 |
| Tsp45I | GTSAC | 6 cut(s) | 8, 214, 242, 965, 2114, 2662 |
| TspDTI | ATGAA | 8 cut(s) | 472, 761, 1533, 1595, 2069, 2139, 2153, 2987 |
| TspGWI | ACGGA | 2 cut(s) | 436, 720 |
| TspRI | CASTG | 7 cut(s) | 238, 309, 357, 1744, 2205, 2234, 2859 |
| Tth111I | GACNNNGTC | 1 cut(s) | 352 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2829 |
| VneI | GTGCAC | 2 cut(s) | 290, 1101 |
| VpaK11BI | GGWCC | 4 cut(s) | 490, 974, 2472, 2518 |
| XapI | RAATTY | 3 cut(s) | 79, 115, 980 |
| XbaI | TCTAGA | 1 cut(s) | 851 |
| XceI | RCATGY | 5 cut(s) | 26, 335, 2904, 2957, 2963 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2725 |
| XmaJI | CCTAGG | 1 cut(s) | 2539 |
| XmiI | GTMKAC | 1 cut(s) | 1283 |
| Zsp2I | ATGCAT | 2 cut(s) | 879, 2512 |