Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 11 - 122 | 1.6e-36 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 717 |
| AclWI | GGATC | 2 cut(s) | 98, 393 |
| AcoI | YGGCCR | 1 cut(s) | 260 |
| AcuI | CTGAAG | 3 cut(s) | 81, 612, 753 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 353, 630 |
| AflII | CTTAAG | 1 cut(s) | 437 |
| AgsI | TTSAA | 6 cut(s) | 97, 109, 128, 311, 451, 710 |
| AjnI | CCWGG | 1 cut(s) | 337 |
| AluBI | AGCT | 3 cut(s) | 140, 331, 401 |
| AluI | AGCT | 3 cut(s) | 140, 331, 401 |
| Alw26I | GTCTC | 1 cut(s) | 185 |
| AlwI | GGATC | 2 cut(s) | 98, 393 |
| AoxI | GGCC | 1 cut(s) | 260 |
| ApeKI | GCWGC | 2 cut(s) | 81, 328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 533, 565 |
| AsuHPI | GGTGA | 4 cut(s) | 368, 479, 500, 517 |
| BalI | TGGCCA | 1 cut(s) | 262 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 503, 535 |
| BbvI | GCAGC | 2 cut(s) | 93, 340 |
| BccI | CCATC | 2 cut(s) | 81, 268 |
| BciT130I | CCWGG | 1 cut(s) | 339 |
| BciVI | GTATCC | 1 cut(s) | 668 |
| BclI | TGATCA | 1 cut(s) | 733 |
| BcoDI | GTCTC | 1 cut(s) | 185 |
| BfaI | CTAG | 1 cut(s) | 363 |
| BfrI | CTTAAG | 1 cut(s) | 437 |
| BfuI | GTATCC | 1 cut(s) | 668 |
| BglII | AGATCT | 1 cut(s) | 304 |
| BisI | GCNGC | 2 cut(s) | 82, 329 |
| BlsI | GCNGC | 2 cut(s) | 83, 330 |
| Bme1390I | CCNGG | 1 cut(s) | 339 |
| BmiI | GGNNCC | 1 cut(s) | 622 |
| BmrFI | CCNGG | 1 cut(s) | 339 |
| BpmI | CTGGAG | 2 cut(s) | 186, 321 |
| BsaBI | GATNNNNATC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 1 cut(s) | 21 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 184, 214 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 353, 630 |
| Bse1I | ACTGG | 2 cut(s) | 203, 465 |
| Bse8I | GATNNNNATC | 1 cut(s) | 30 |
| BseBI | CCWGG | 1 cut(s) | 339 |
| BseDI | CCNNGG | 1 cut(s) | 21 |
| BseGI | GGATG | 3 cut(s) | 31, 283, 343 |
| BseJI | GATNNNNATC | 1 cut(s) | 30 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 353, 630 |
| BseMII | CTCAG | 3 cut(s) | 5, 393, 490 |
| BseNI | ACTGG | 2 cut(s) | 203, 465 |
| BseXI | GCAGC | 2 cut(s) | 93, 340 |
| BshFI | GGCC | 1 cut(s) | 262 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 353, 630 |
| BsmAI | GTCTC | 1 cut(s) | 185 |
| BsnI | GGCC | 1 cut(s) | 262 |
| Bsp143I | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| BspANI | GGCC | 1 cut(s) | 262 |
| BspCNI | CTCAG | 3 cut(s) | 6, 394, 489 |
| BspLI | GGNNCC | 1 cut(s) | 622 |
| BspPI | GGATC | 2 cut(s) | 98, 393 |
| BspTI | CTTAAG | 1 cut(s) | 437 |
| BsrI | ACTGG | 2 cut(s) | 203, 465 |
| BssECI | CCNNGG | 1 cut(s) | 21 |
| BssMI | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| BssT1I | CCWWGG | 1 cut(s) | 21 |
| Bst2UI | CCWGG | 1 cut(s) | 339 |
| Bst4CI | ACNGT | 2 cut(s) | 223, 715 |
| BstAFI | CTTAAG | 1 cut(s) | 437 |
| BstDEI | CTNAG | 3 cut(s) | 14, 402, 476 |
| BstF5I | GGATG | 3 cut(s) | 31, 283, 343 |
| BstKTI | GATC | 5 cut(s) | 93, 307, 388, 519, 736 |
| BstMAI | GTCTC | 1 cut(s) | 185 |
| BstMBI | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| BstNI | CCWGG | 1 cut(s) | 339 |
| BstNSI | RCATGY | 1 cut(s) | 584 |
| BstSCI | CCNGG | 1 cut(s) | 337 |
| BstV1I | GCAGC | 2 cut(s) | 93, 340 |
| BstX2I | RGATCY | 3 cut(s) | 90, 304, 385 |
| BstYI | RGATCY | 3 cut(s) | 90, 304, 385 |
| BsuI | GTATCC | 1 cut(s) | 668 |
| BsuRI | GGCC | 1 cut(s) | 262 |
| BtsCI | GGATG | 3 cut(s) | 31, 283, 343 |
| BtsIMutI | CAGTG | 1 cut(s) | 678 |
| CviAII | CATG | 4 cut(s) | 163, 299, 581, 731 |
| CviJI | RGCY | 7 cut(s) | 20, 140, 262, 331, 401, 695, 729 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 140, 262, 331, 401, 695, 729 |
| DdeI | CTNAG | 3 cut(s) | 14, 402, 476 |
| DpnI | GATC | 5 cut(s) | 92, 306, 387, 518, 735 |
| DpnII | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| EaeI | YGGCCR | 1 cut(s) | 260 |
| Eco130I | CCWWGG | 1 cut(s) | 21 |
| Eco57I | CTGAAG | 3 cut(s) | 81, 612, 753 |
| EcoRII | CCWGG | 1 cut(s) | 337 |
| EcoT14I | CCWWGG | 1 cut(s) | 21 |
| EcoT22I | ATGCAT | 1 cut(s) | 582 |
| ErhI | CCWWGG | 1 cut(s) | 21 |
| FaeI | CATG | 4 cut(s) | 166, 302, 584, 734 |
| FatI | CATG | 4 cut(s) | 162, 298, 580, 730 |
| FbaI | TGATCA | 1 cut(s) | 733 |
| FblI | GTMKAC | 1 cut(s) | 717 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 329 |
| FokI | GGATG | 3 cut(s) | 38, 290, 330 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 329 |
| FspBI | CTAG | 1 cut(s) | 363 |
| GluI | GCNGC | 2 cut(s) | 82, 329 |
| GsuI | CTGGAG | 2 cut(s) | 186, 321 |
| HaeIII | GGCC | 1 cut(s) | 262 |
| Hin1II | CATG | 4 cut(s) | 166, 302, 584, 734 |
| HincII | GTYRAC | 1 cut(s) | 181 |
| HindII | GTYRAC | 1 cut(s) | 181 |
| HinfI | GANTC | 2 cut(s) | 159, 359 |
| HphI | GGTGA | 4 cut(s) | 368, 479, 500, 517 |
| Hpy166II | GTNNAC | 2 cut(s) | 181, 718 |
| Hpy188I | TCNGA | 1 cut(s) | 273 |
| Hpy188III | TCNNGA | 2 cut(s) | 308, 392 |
| Hpy8I | GTNNAC | 2 cut(s) | 181, 718 |
| HpyAV | CCTTC | 5 cut(s) | 56, 347, 458, 624, 777 |
| HpyCH4III | ACNGT | 2 cut(s) | 223, 715 |
| HpyCH4V | TGCA | 7 cut(s) | 166, 245, 328, 554, 580, 646, 743 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| HpyF3I | CTNAG | 3 cut(s) | 14, 402, 476 |
| Hsp92II | CATG | 4 cut(s) | 166, 302, 584, 734 |
| Ksp22I | TGATCA | 1 cut(s) | 733 |
| Kzo9I | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| LmnI | GCTCC | 1 cut(s) | 205 |
| LpnPI | CCDG | 8 cut(s) | 72, 216, 324, 351, 377, 446, 552, 681 |
| Lsp1109I | GCAGC | 2 cut(s) | 93, 340 |
| MaeI | CTAG | 1 cut(s) | 363 |
| MaeIII | GTNAC | 1 cut(s) | 467 |
| MalI | GATC | 5 cut(s) | 92, 306, 387, 518, 735 |
| MboI | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| MboII | GAAGA | 7 cut(s) | 20, 85, 287, 323, 326, 380, 407 |
| MflI | RGATCY | 3 cut(s) | 90, 304, 385 |
| MlsI | TGGCCA | 1 cut(s) | 262 |
| MluCI | AATT | 2 cut(s) | 123, 446 |
| MluNI | TGGCCA | 1 cut(s) | 262 |
| MnlI | CCTC | 4 cut(s) | 149, 345, 444, 533 |
| Mox20I | TGGCCA | 1 cut(s) | 262 |
| Mph1103I | ATGCAT | 1 cut(s) | 582 |
| MscI | TGGCCA | 1 cut(s) | 262 |
| MseI | TTAA | 6 cut(s) | 51, 249, 282, 380, 438, 456 |
| Msp20I | TGGCCA | 1 cut(s) | 262 |
| MspCI | CTTAAG | 1 cut(s) | 437 |
| MspR9I | CCNGG | 1 cut(s) | 339 |
| MvaI | CCWGG | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NdeII | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| NlaIII | CATG | 4 cut(s) | 166, 302, 584, 734 |
| NlaIV | GGNNCC | 1 cut(s) | 622 |
| NmuCI | GTSAC | 1 cut(s) | 467 |
| NsiI | ATGCAT | 1 cut(s) | 582 |
| NspI | RCATGY | 1 cut(s) | 584 |
| PfeI | GAWTC | 2 cut(s) | 159, 359 |
| PkrI | GCNGC | 2 cut(s) | 83, 330 |
| Psp6I | CCWGG | 1 cut(s) | 337 |
| PspGI | CCWGG | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 1 cut(s) | 622 |
| PsuI | RGATCY | 3 cut(s) | 90, 304, 385 |
| SaqAI | TTAA | 6 cut(s) | 51, 249, 282, 380, 438, 456 |
| SatI | GCNGC | 2 cut(s) | 82, 329 |
| Sau3AI | GATC | 5 cut(s) | 90, 304, 385, 516, 733 |
| ScrFI | CCNGG | 1 cut(s) | 339 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| Sse9I | AATT | 2 cut(s) | 123, 446 |
| SspMI | CTAG | 1 cut(s) | 363 |
| StyD4I | CCNGG | 1 cut(s) | 337 |
| StyI | CCWWGG | 1 cut(s) | 21 |
| TaaI | ACNGT | 2 cut(s) | 223, 715 |
| TaqI | TCGA | 3 cut(s) | 142, 226, 724 |
| TasI | AATT | 2 cut(s) | 123, 446 |
| TfiI | GAWTC | 2 cut(s) | 159, 359 |
| Tru1I | TTAA | 6 cut(s) | 51, 249, 282, 380, 438, 456 |
| Tru9I | TTAA | 6 cut(s) | 51, 249, 282, 380, 438, 456 |
| TscAI | CASTG | 1 cut(s) | 685 |
| TseFI | GTSAC | 1 cut(s) | 467 |
| TseI | GCWGC | 2 cut(s) | 81, 328 |
| Tsp45I | GTSAC | 1 cut(s) | 467 |
| TspDTI | ATGAA | 6 cut(s) | 17, 42, 151, 230, 287, 425 |
| TspRI | CASTG | 1 cut(s) | 685 |
| Vha464I | CTTAAG | 1 cut(s) | 437 |
| XceI | RCATGY | 1 cut(s) | 584 |
| XmiI | GTMKAC | 1 cut(s) | 717 |
| XspI | CTAG | 1 cut(s) | 363 |
| Zsp2I | ATGCAT | 1 cut(s) | 582 |