FvH4_4g08191

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000071
Physical Location & Seq
Reverse (-)
7996584 .. 7998867
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08191.t1

Sequence Viewer

Length: 1575 bp
ATGCTGCCTCCACACCATCTTCAGTCGTCCTCATCCAGTCCTCCACCAGGTACGCGCTATCCGCTTTGCAATTACATCTCATATCACCGATATTCTGCTCCACATCTTTCTTTTGTTGCTAATATTAGTCAAGATGTTGAGCCCTCTTCCTATGATGTTGCTGTTGCTGATCCCAAGTGGCAGCAGGCTATGACTTCTGAGCTCGATGCGCTCACTGCTCAAAATACTTGGACTCTTGTTCCCTTACCTCCTGGCAAACAACCAATTGGTTGTAAATGGGTATATCGCATCAAGTACAATGCTGATGGTTCTGTCGAGCGCTATAAGGCTCGCCTCGTTGCTAAAGGTTTTACTCAAACTGCTGGCATTGATTATCATGATACCTTCTCGCCTACTGCAAAAATGATCACTGTTCGTTGTCTTCTTGCAATTGCTGCCAGCAAGAATTGGCCCCTGCATCAATTAGACGTTAACAATGCTTTTCTTAATGGTGACTTGGATGAAGAGTTATATATGTCTCCTCCTCCTGGTCTTCGGCGACAGGGGGAGAATATAGTGTGTCACCTCAACAAGTCGTTGTATGGATTGAAACAGGCTTCTCGCCAATGGTTCTCTAAGTTCACCTCAACTATACTTGCTGCTGGTTTCTCTCAATCCAAAGCCGACTATTCTCTCTTTGTCCGTAAAGATGGTACATCTCTTACTGTCTTACTTATATATGTTGATGATATCCTTATCACAGGAAACAGTTTGGAGTCTATAAATGCTAAACAATTCCTTCATACTCGTTTTCGTATTAAAGACCTTGGTGACTTGAAGTATTTTCTTGGCATTGAGATAGCTCGTTCAAAGAAAGGGATTTACATATCTCAACGCAAATATGCATTGGAGATCATTAAAGACAGTGGTTTTTTGGGTGCCAAACCAGTAGAGTTTCCTATGGAAGAATGCAAACTTTCAAACAAATGTGAATTGCTTAAAGATCCAGCTGCATATCGGCGTTTAGTTGGTCGATTAATTTACCTAACGATTACTAGACCCGATATCACATATTCTGTGCATGTTCTTAGTCATTTTATGCATGATCCACGCCAACCTCACATGGCAGCTGCACTTCGAATTGTTCGTTATTTAAAGTCATCTCCAGGACAAGGTTTACTTCTGCAGTCTCATAATTCATTGAACCTGAAAGCTTTCTGTGATTCTGATTGGGCGGGTTGTCCCATCACCCGTCATTCCACCACTGGTTATTGTGTGTTCTTGGGAAATTCCTTAATTTCATGGAGGACTAAAAGGCAGAAGACCGTTTCTTTATCAAGTGCAGAAGCCGAGTATAGAGCAATGGCAGGGAATCAAAGGTCCTCCTTACAGACTTATTCATGGCAACACCAAAGAAATTTCCGACATGAAAACGAAAAGGAGCAGCAGTACAGTCAGTACGCCCTATACTACTTCATTCTCGCACAATACATTTTCTCAAGTTCAACCTCATATTCAAGCATGGACAGAGACATATGGGAAGAATTATCTCCAATGGAATGGTCGTCAAGCTCAGTTGGTGATTACATAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

525

Amino Acids

59.54

Weight (kDa)

9.07

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 75 - 315 4.5e-77 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 917
AccII CGCG 1 cut(s) 55
AciI CCGC 2 cut(s) 62, 1214
AclWI GGATC 3 cut(s) 164, 977, 1079
AcsI RAATTY 2 cut(s) 1267, 1396
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 5 cut(s) 52, 296, 694, 1430, 1439
AfeI AGCGCT 1 cut(s) 320
AfiI CCNNNNNNNGG 3 cut(s) 47, 527, 1151
AgsI TTSAA 7 cut(s) 589, 817, 849, 960, 1183, 1485, 1497
AjnI CCWGG 4 cut(s) 46, 250, 526, 1144
AluBI AGCT 6 cut(s) 202, 842, 989, 1109, 1193, 1551
AluI AGCT 6 cut(s) 202, 842, 989, 1109, 1193, 1551
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 3 cut(s) 522, 1173, 1503
AlwI GGATC 3 cut(s) 164, 977, 1079
Aor51HI AGCGCT 1 cut(s) 320
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 8 cut(s) 4, 181, 434, 638, 989, 1106, 1109, 1423
ApoI RAATTY 2 cut(s) 1267, 1396
AseI ATTAAT 1 cut(s) 1016
Asp700I GAANNNNTTC 1 cut(s) 1193
AspLEI GCGC 3 cut(s) 57, 211, 321
AspS9I GGNCC 2 cut(s) 450, 1359
AsuHPI GGTGA 7 cut(s) 77, 503, 554, 613, 821, 1219, 1571
AsuII TTCGAA 1 cut(s) 1117
AvaII GGWCC 1 cut(s) 1359
BanI GGYRCC 1 cut(s) 917
BanII GRGCYC 2 cut(s) 144, 204
BbsI GAAGAC 3 cut(s) 413, 524, 1307
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 7 cut(s) 193, 421, 625, 976, 1096, 1118, 1435
BccI CCATC 4 cut(s) 24, 299, 683, 1232
BciT130I CCWGG 4 cut(s) 48, 252, 528, 1146
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 3 cut(s) 522, 1173, 1503
BfaI CTAG 1 cut(s) 1035
BfmI CTRYAG 1 cut(s) 1163
BfoI RGCGCY 1 cut(s) 322
BisI GCNGC 8 cut(s) 5, 182, 435, 639, 990, 1107, 1110, 1424
BlsI GCNGC 8 cut(s) 6, 183, 436, 640, 991, 1108, 1111, 1425
Bme1390I CCNGG 4 cut(s) 48, 252, 528, 1146
Bme18I GGWCC 1 cut(s) 1359
BmgT120I GGNCC 2 cut(s) 450, 1359
BmiI GGNNCC 2 cut(s) 452, 919
BmrFI CCNGG 4 cut(s) 48, 252, 528, 1146
BmsI GCATC 3 cut(s) 196, 297, 466
BpiI GAAGAC 3 cut(s) 413, 524, 1307
BpmI CTGGAG 1 cut(s) 1128
Bpu14I TTCGAA 1 cut(s) 1117
BpuEI CTTGAG 1 cut(s) 1462
BsaJI CCNNGG 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 1412, 1442
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 527, 1151
Bse1I ACTGG 3 cut(s) 36, 926, 1249
Bse3DI GCAATG 1 cut(s) 1347
BseBI CCWGG 4 cut(s) 48, 252, 528, 1146
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 2 cut(s) 32, 505
BseLI CCNNNNNNNGG 3 cut(s) 47, 527, 1151
BseMI GCAATG 1 cut(s) 1347
BseMII CTCAG 2 cut(s) 189, 1566
BseNI ACTGG 3 cut(s) 36, 926, 1249
BseRI GAGGAG 2 cut(s) 510, 513
BseXI GCAGC 7 cut(s) 193, 421, 625, 976, 1096, 1118, 1435
BsgI GTGCAG 2 cut(s) 1095, 1341
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 1206
BslI CCNNNNNNNGG 3 cut(s) 47, 527, 1151
BsmAI GTCTC 3 cut(s) 522, 1173, 1503
BsmFI GGGAC 1 cut(s) 1206
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 1117
Bsp1286I GDGCHC 2 cut(s) 144, 204
Bsp143I GATC 5 cut(s) 169, 405, 891, 982, 1084
BspACI CCGC 2 cut(s) 62, 1214
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 2 cut(s) 190, 1565
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 452, 919
BspMAI CTGCAG 1 cut(s) 1167
BspPI GGATC 3 cut(s) 164, 977, 1079
BspT104I TTCGAA 1 cut(s) 1117
BspT107I GGYRCC 1 cut(s) 917
BsrDI GCAATG 1 cut(s) 1347
BsrI ACTGG 3 cut(s) 36, 926, 1249
BssECI CCNNGG 1 cut(s) 805
BssMI GATC 5 cut(s) 169, 405, 891, 982, 1084
BssT1I CCWWGG 1 cut(s) 805
Bst2UI CCWGG 4 cut(s) 48, 252, 528, 1146
Bst4CI ACNGT 6 cut(s) 412, 706, 749, 905, 1306, 1433
Bst6I CTCTTC 2 cut(s) 151, 498
BstAPI GCANNNNNTGC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 1117
BstC8I GCNNGC 4 cut(s) 186, 331, 364, 439
BstDEI CTNAG 4 cut(s) 198, 615, 1067, 1552
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 32, 505
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 3 cut(s) 57, 211, 321
BstKTI GATC 5 cut(s) 172, 408, 894, 985, 1087
BstMAI GTCTC 3 cut(s) 522, 1173, 1503
BstMBI GATC 5 cut(s) 169, 405, 891, 982, 1084
BstMWI GCNNNNNNNGC 4 cut(s) 61, 208, 215, 434
BstNI CCWGG 4 cut(s) 48, 252, 528, 1146
BstNSI RCATGY 1 cut(s) 1064
BstSCI CCNGG 4 cut(s) 46, 250, 526, 1144
BstSFI CTRYAG 1 cut(s) 1163
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 7 cut(s) 193, 421, 625, 976, 1096, 1118, 1435
BstV2I GAAGAC 3 cut(s) 413, 524, 1307
BstX2I RGATCY 1 cut(s) 982
BstXI CCANNNNNNTGG 1 cut(s) 1539
BstYI RGATCY 1 cut(s) 982
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 32, 505
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 4 cut(s) 213, 408, 910, 1242
Cac8I GCNNGC 4 cut(s) 186, 331, 364, 439
CciI TCATGA 1 cut(s) 376
CfoI GCGC 3 cut(s) 57, 211, 321
Cfr13I GGNCC 2 cut(s) 450, 1359
CsiI ACCWGGT 1 cut(s) 46
Csp6I GTAC 5 cut(s) 51, 295, 693, 1429, 1438
CviAII CATG 8 cut(s) 377, 1061, 1082, 1102, 1281, 1380, 1406, 1501
CviQI GTAC 5 cut(s) 51, 295, 693, 1429, 1438
DdeI CTNAG 4 cut(s) 198, 615, 1067, 1552
DpnI GATC 5 cut(s) 171, 407, 893, 984, 1086
DpnII GATC 5 cut(s) 169, 405, 891, 982, 1084
DraI TTTAAA 1 cut(s) 1134
Eam1104I CTCTTC 2 cut(s) 151, 498
EarI CTCTTC 2 cut(s) 151, 498
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 805
Eco24I GRGCYC 2 cut(s) 144, 204
Eco32I GATATC 2 cut(s) 730, 1045
Eco47I GGWCC 1 cut(s) 1359
Eco47III AGCGCT 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 1359
EcoRII CCWGG 4 cut(s) 46, 250, 526, 1144
EcoRV GATATC 2 cut(s) 730, 1045
EcoT14I CCWWGG 1 cut(s) 805
EcoT22I ATGCAT 2 cut(s) 886, 1083
EcoT38I GRGCYC 2 cut(s) 144, 204
ErhI CCWWGG 1 cut(s) 805
FaeI CATG 8 cut(s) 380, 1064, 1085, 1105, 1284, 1383, 1409, 1504
FalI AAGNNNNNCTT 2 cut(s) 1143, 1175
FaqI GGGAC 1 cut(s) 1206
FatI CATG 8 cut(s) 376, 1060, 1081, 1101, 1280, 1379, 1405, 1500
FauI CCCGC 1 cut(s) 1207
FauNDI CATATG 1 cut(s) 1514
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 8 cut(s) 5, 182, 435, 639, 990, 1107, 1110, 1424
FokI GGATG 2 cut(s) 19, 512
FriOI GRGCYC 2 cut(s) 144, 204
Fsp4HI GCNGC 8 cut(s) 5, 182, 435, 639, 990, 1107, 1110, 1424
FspBI CTAG 1 cut(s) 1035
GlaI GCGC 3 cut(s) 56, 210, 320
GluI GCNGC 8 cut(s) 5, 182, 435, 639, 990, 1107, 1110, 1424
GsuI CTGGAG 1 cut(s) 1128
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 1 cut(s) 451
HhaI GCGC 3 cut(s) 57, 211, 321
Hin1II CATG 8 cut(s) 380, 1064, 1085, 1105, 1284, 1383, 1409, 1504
Hin6I GCGC 3 cut(s) 55, 209, 319
HinP1I GCGC 3 cut(s) 55, 209, 319
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 1191
HinfI GANTC 4 cut(s) 232, 755, 1202, 1351
HpaI GTTAAC 1 cut(s) 472
HphI GGTGA 7 cut(s) 77, 503, 554, 613, 821, 1219, 1571
Hpy166II GTNNAC 3 cut(s) 472, 621, 1157
Hpy188I TCNGA 3 cut(s) 199, 1207, 1403
Hpy188III TCNNGA 2 cut(s) 131, 377
Hpy8I GTNNAC 3 cut(s) 472, 621, 1157
HpyAV CCTTC 2 cut(s) 394, 788
HpyCH4III ACNGT 6 cut(s) 412, 706, 749, 905, 1306, 1433
HpyCH4IV ACGT 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 208, 215, 434
HpyF3I CTNAG 4 cut(s) 198, 615, 1067, 1552
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 8 cut(s) 380, 1064, 1085, 1105, 1284, 1383, 1409, 1504
HspAI GCGC 3 cut(s) 55, 209, 319
Ksp22I TGATCA 1 cut(s) 405
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 5 cut(s) 169, 405, 891, 982, 1084
LmnI GCTCC 2 cut(s) 103, 1420
Lsp1109I GCAGC 7 cut(s) 193, 421, 625, 976, 1096, 1118, 1435
LweI GCATC 3 cut(s) 196, 297, 466
MabI ACCWGGT 1 cut(s) 46
MaeI CTAG 1 cut(s) 1035
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 3 cut(s) 491, 560, 809
MalI GATC 5 cut(s) 171, 407, 893, 984, 1086
MboI GATC 5 cut(s) 169, 405, 891, 982, 1084
MboII GAAGA 8 cut(s) 11, 138, 413, 515, 524, 956, 1312, 1532
MfeI CAATTG 2 cut(s) 264, 429
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 2 cut(s) 144, 204
MlyI GAGTC 2 cut(s) 226, 764
MmeI TCCRAC 1 cut(s) 1426
Mph1103I ATGCAT 2 cut(s) 886, 1083
MroXI GAANNNNTTC 1 cut(s) 1193
MseI TTAA 8 cut(s) 471, 486, 798, 897, 978, 1016, 1133, 1274
MspA1I CMGCKG 2 cut(s) 989, 1109
MspR9I CCNGG 4 cut(s) 48, 252, 528, 1146
MunI CAATTG 2 cut(s) 264, 429
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 4 cut(s) 48, 252, 528, 1146
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 61, 208, 215, 434
NdeI CATATG 1 cut(s) 1514
NdeII GATC 5 cut(s) 169, 405, 891, 982, 1084
NlaIII CATG 8 cut(s) 380, 1064, 1085, 1105, 1284, 1383, 1409, 1504
NlaIV GGNNCC 2 cut(s) 452, 919
NmeAIII GCCGAG 1 cut(s) 1354
NmuCI GTSAC 3 cut(s) 491, 560, 809
NsiI ATGCAT 2 cut(s) 886, 1083
NspI RCATGY 1 cut(s) 1064
NspV TTCGAA 1 cut(s) 1117
PagI TCATGA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 1123
PctI GAATGC 1 cut(s) 953
PdmI GAANNNNTTC 1 cut(s) 1193
PfeI GAWTC 2 cut(s) 1202, 1351
PfoI TCCNGGA 1 cut(s) 1144
PkrI GCNGC 8 cut(s) 6, 183, 436, 640, 991, 1108, 1111, 1425
PleI GAGTC 2 cut(s) 226, 763
PpsI GAGTC 2 cut(s) 226, 763
PpuMI RGGWCCY 1 cut(s) 1359
PshBI ATTAAT 1 cut(s) 1016
Psp124BI GAGCTC 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 1359
Psp6I CCWGG 4 cut(s) 46, 250, 526, 1144
PspGI CCWGG 4 cut(s) 46, 250, 526, 1144
PspN4I GGNNCC 2 cut(s) 452, 919
PspPI GGNCC 2 cut(s) 450, 1359
PspPPI RGGWCCY 1 cut(s) 1359
PstI CTGCAG 1 cut(s) 1167
PsuI RGATCY 1 cut(s) 982
PvuII CAGCTG 2 cut(s) 989, 1109
RsaI GTAC 5 cut(s) 52, 296, 694, 1430, 1439
RsaNI GTAC 5 cut(s) 51, 295, 693, 1429, 1438
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 8 cut(s) 471, 486, 798, 897, 978, 1016, 1133, 1274
SatI GCNGC 8 cut(s) 5, 182, 435, 639, 990, 1107, 1110, 1424
Sau3AI GATC 5 cut(s) 169, 405, 891, 982, 1084
Sau96I GGNCC 2 cut(s) 450, 1359
SchI GAGTC 2 cut(s) 226, 764
ScrFI CCNGG 4 cut(s) 48, 252, 528, 1146
SduI GDGCHC 2 cut(s) 144, 204
SexAI ACCWGGT 1 cut(s) 46
SfaNI GCATC 3 cut(s) 196, 297, 466
SfcI CTRYAG 1 cut(s) 1163
SfuI TTCGAA 1 cut(s) 1117
SinI GGWCC 1 cut(s) 1359
SmlI CTYRAG 1 cut(s) 1477
SmoI CTYRAG 1 cut(s) 1477
SsiI CCGC 2 cut(s) 62, 1214
SspI AATATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 1035
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 46, 250, 526, 1144
StyI CCWWGG 1 cut(s) 805
TaaI ACNGT 6 cut(s) 412, 706, 749, 905, 1306, 1433
TaiI ACGT 1 cut(s) 471
TaqI TCGA 4 cut(s) 204, 315, 1012, 1117
TatI WGTACW 2 cut(s) 294, 1428
TfiI GAWTC 2 cut(s) 1202, 1351
Tru1I TTAA 8 cut(s) 471, 486, 798, 897, 978, 1016, 1133, 1274
Tru9I TTAA 8 cut(s) 471, 486, 798, 897, 978, 1016, 1133, 1274
TscAI CASTG 4 cut(s) 220, 415, 910, 1249
TseFI GTSAC 3 cut(s) 491, 560, 809
TseI GCWGC 8 cut(s) 4, 181, 434, 638, 989, 1106, 1109, 1423
Tsp45I GTSAC 3 cut(s) 491, 560, 809
TspDTI ATGAA 7 cut(s) 516, 770, 1167, 1269, 1368, 1422, 1444
TspGWI ACGGA 1 cut(s) 671
TspRI CASTG 4 cut(s) 220, 415, 910, 1249
VpaK11BI GGWCC 1 cut(s) 1359
VspI ATTAAT 1 cut(s) 1016
XagI CCTNNNNNAGG 1 cut(s) 45
XapI RAATTY 2 cut(s) 1267, 1396
XceI RCATGY 1 cut(s) 1064
XmnI GAANNNNTTC 1 cut(s) 1193
XspI CTAG 1 cut(s) 1035
Zsp2I ATGCAT 2 cut(s) 886, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.