Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 151 - 393 | 2.3e-79 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 315, 516 |
| Acc36I | ACCTGC | 1 cut(s) | 1445 |
| AclWI | GGATC | 3 cut(s) | 155, 773, 1889 |
| AcsI | RAATTY | 3 cut(s) | 320, 474, 1860 |
| AcuI | CTGAAG | 1 cut(s) | 1008 |
| AcvI | CACGTG | 1 cut(s) | 836 |
| AfaI | GTAC | 1 cut(s) | 864 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1582 |
| AgsI | TTSAA | 7 cut(s) | 71, 137, 437, 731, 869, 1073, 1769 |
| AhlI | ACTAGT | 1 cut(s) | 1646 |
| AjnI | CCWGG | 1 cut(s) | 1512 |
| Alw21I | GWGCWC | 1 cut(s) | 1762 |
| Alw26I | GTCTC | 4 cut(s) | 544, 1218, 1410, 1625 |
| AlwI | GGATC | 3 cut(s) | 155, 773, 1889 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1568 |
| AoxI | GGCC | 3 cut(s) | 680, 1093, 1584 |
| ApeKI | GCWGC | 3 cut(s) | 1132, 1229, 1682 |
| ApoI | RAATTY | 3 cut(s) | 320, 474, 1860 |
| AseI | ATTAAT | 1 cut(s) | 669 |
| AspS9I | GGNCC | 1 cut(s) | 245 |
| AsuC2I | CCSGG | 1 cut(s) | 759 |
| AsuHPI | GGTGA | 3 cut(s) | 734, 989, 1819 |
| AsuII | TTCGAA | 2 cut(s) | 472, 1018 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| BaeGI | GKGCMC | 1 cut(s) | 355 |
| BanII | GRGCYC | 2 cut(s) | 195, 1762 |
| BauI | CACGAG | 2 cut(s) | 234, 573 |
| BbrPI | CACGTG | 1 cut(s) | 836 |
| Bbv12I | GWGCWC | 1 cut(s) | 1762 |
| BbvI | GCAGC | 3 cut(s) | 1119, 1216, 1669 |
| BccI | CCATC | 6 cut(s) | 211, 259, 501, 530, 818, 1863 |
| BciT130I | CCWGG | 1 cut(s) | 1514 |
| BciVI | GTATCC | 2 cut(s) | 300, 1427 |
| BcnI | CCSGG | 1 cut(s) | 759 |
| BcoDI | GTCTC | 4 cut(s) | 544, 1218, 1410, 1625 |
| BcuI | ACTAGT | 1 cut(s) | 1646 |
| BfaI | CTAG | 3 cut(s) | 1226, 1557, 1647 |
| BfmI | CTRYAG | 2 cut(s) | 207, 495 |
| BfuAI | ACCTGC | 1 cut(s) | 1445 |
| BfuI | GTATCC | 2 cut(s) | 300, 1427 |
| BisI | GCNGC | 3 cut(s) | 1133, 1230, 1683 |
| BlsI | GCNGC | 3 cut(s) | 1134, 1231, 1684 |
| BmcAI | AGTACT | 1 cut(s) | 864 |
| Bme1390I | CCNGG | 2 cut(s) | 759, 1514 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 1 cut(s) | 245 |
| BmiI | GGNNCC | 2 cut(s) | 1381, 1640 |
| BmrFI | CCNGG | 2 cut(s) | 759, 1514 |
| BmsI | GCATC | 2 cut(s) | 1129, 1432 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 739, 771 |
| BpmI | CTGGAG | 1 cut(s) | 63 |
| Bpu14I | TTCGAA | 2 cut(s) | 472, 1018 |
| BpuEI | CTTGAG | 1 cut(s) | 1746 |
| BpuMI | CCSGG | 1 cut(s) | 759 |
| BsaAI | YACGTR | 1 cut(s) | 836 |
| BsaBI | GATNNNNATC | 2 cut(s) | 39, 105 |
| BsaI | GGTCTC | 1 cut(s) | 1625 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 604, 634 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1582 |
| Bse1I | ACTGG | 4 cut(s) | 65, 131, 1489, 1706 |
| Bse3DI | GCAATG | 3 cut(s) | 1284, 1692, 1692 |
| Bse8I | GATNNNNATC | 2 cut(s) | 39, 105 |
| BseBI | CCWGG | 1 cut(s) | 1514 |
| BseGI | GGATG | 1 cut(s) | 703 |
| BseJI | GATNNNNATC | 2 cut(s) | 39, 105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1582 |
| BseMI | GCAATG | 3 cut(s) | 1284, 1692, 1692 |
| BseMII | CTCAG | 2 cut(s) | 338, 1862 |
| BseNI | ACTGG | 4 cut(s) | 65, 131, 1489, 1706 |
| BseRI | GAGGAG | 1 cut(s) | 1613 |
| BseSI | GKGCMC | 1 cut(s) | 355 |
| BseXI | GCAGC | 3 cut(s) | 1119, 1216, 1669 |
| BsgI | GTGCAG | 2 cut(s) | 1477, 1581 |
| BshFI | GGCC | 3 cut(s) | 682, 1095, 1586 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1762 |
| BsiSI | CCGG | 1 cut(s) | 759 |
| BslFI | GGGAC | 1 cut(s) | 1645 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1582 |
| BsmAI | GTCTC | 4 cut(s) | 544, 1218, 1410, 1625 |
| BsmFI | GGGAC | 1 cut(s) | 1645 |
| BsnI | GGCC | 3 cut(s) | 682, 1095, 1586 |
| Bso31I | GGTCTC | 1 cut(s) | 1625 |
| Bsp119I | TTCGAA | 2 cut(s) | 472, 1018 |
| Bsp1286I | GDGCHC | 3 cut(s) | 195, 355, 1762 |
| Bsp143I | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| BspANI | GGCC | 3 cut(s) | 682, 1095, 1586 |
| BspCNI | CTCAG | 2 cut(s) | 339, 1861 |
| BspHI | TCATGA | 4 cut(s) | 367, 775, 1714, 1804 |
| BspLI | GGNNCC | 2 cut(s) | 1381, 1640 |
| BspMAI | CTGCAG | 1 cut(s) | 211 |
| BspMI | ACCTGC | 1 cut(s) | 1445 |
| BspPI | GGATC | 3 cut(s) | 155, 773, 1889 |
| BspQI | GCTCTTC | 1 cut(s) | 1520 |
| BspT104I | TTCGAA | 2 cut(s) | 472, 1018 |
| BspTNI | GGTCTC | 1 cut(s) | 1625 |
| BsrDI | GCAATG | 3 cut(s) | 1284, 1692, 1692 |
| BsrI | ACTGG | 4 cut(s) | 65, 131, 1489, 1706 |
| BssMI | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| BssSI | CACGAG | 2 cut(s) | 234, 573 |
| Bst2BI | CACGAG | 2 cut(s) | 234, 573 |
| Bst2UI | CCWGG | 1 cut(s) | 1514 |
| Bst4CI | ACNGT | 4 cut(s) | 544, 643, 1184, 1543 |
| Bst6I | CTCTTC | 3 cut(s) | 726, 984, 1520 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 845 |
| BstBAI | YACGTR | 1 cut(s) | 836 |
| BstBI | TTCGAA | 2 cut(s) | 472, 1018 |
| BstC8I | GCNNGC | 6 cut(s) | 417, 797, 1168, 1323, 1815, 1871 |
| BstDEI | CTNAG | 3 cut(s) | 347, 854, 1848 |
| BstEII | GGTNACC | 2 cut(s) | 750, 1508 |
| BstF5I | GGATG | 1 cut(s) | 703 |
| BstKTI | GATC | 6 cut(s) | 163, 727, 781, 1272, 1471, 1897 |
| BstMAI | GTCTC | 4 cut(s) | 544, 1218, 1410, 1625 |
| BstMBI | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 338, 626, 845, 930, 1308, 1451, 1592, 1609, 1875 |
| BstNI | CCWGG | 1 cut(s) | 1514 |
| BstNSI | RCATGY | 1 cut(s) | 1325 |
| BstPI | GGTNACC | 2 cut(s) | 750, 1508 |
| BstSCI | CCNGG | 2 cut(s) | 757, 1512 |
| BstSFI | CTRYAG | 2 cut(s) | 207, 495 |
| BstSLI | GKGCMC | 1 cut(s) | 355 |
| BstV1I | GCAGC | 3 cut(s) | 1119, 1216, 1669 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 840 |
| BsuI | GTATCC | 2 cut(s) | 300, 1427 |
| BsuRI | GGCC | 3 cut(s) | 682, 1095, 1586 |
| BtsCI | GGATG | 1 cut(s) | 703 |
| BtsI | GCAGTG | 2 cut(s) | 1590, 1842 |
| BtsIMutI | CAGTG | 4 cut(s) | 531, 1437, 1590, 1842 |
| BveI | ACCTGC | 1 cut(s) | 1445 |
| Cac8I | GCNNGC | 6 cut(s) | 417, 797, 1168, 1323, 1815, 1871 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1568 |
| CciI | TCATGA | 4 cut(s) | 367, 775, 1714, 1804 |
| Cfr13I | GGNCC | 1 cut(s) | 245 |
| CsiI | ACCWGGT | 1 cut(s) | 1512 |
| Csp6I | GTAC | 1 cut(s) | 863 |
| CviQI | GTAC | 1 cut(s) | 863 |
| DdeI | CTNAG | 3 cut(s) | 347, 854, 1848 |
| DpnI | GATC | 6 cut(s) | 162, 726, 780, 1271, 1470, 1896 |
| DpnII | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| Eam1104I | CTCTTC | 3 cut(s) | 726, 984, 1520 |
| EarI | CTCTTC | 3 cut(s) | 726, 984, 1520 |
| Ecl136II | GAGCTC | 1 cut(s) | 1760 |
| Eco147I | AGGCCT | 1 cut(s) | 1095 |
| Eco24I | GRGCYC | 2 cut(s) | 195, 1762 |
| Eco31I | GGTCTC | 1 cut(s) | 1625 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| Eco53kI | GAGCTC | 1 cut(s) | 1760 |
| Eco57I | CTGAAG | 1 cut(s) | 1008 |
| Eco72I | CACGTG | 1 cut(s) | 836 |
| Eco91I | GGTNACC | 2 cut(s) | 750, 1508 |
| EcoICRI | GAGCTC | 1 cut(s) | 1760 |
| EcoO109I | RGGNCCY | 1 cut(s) | 245 |
| EcoO65I | GGTNACC | 2 cut(s) | 750, 1508 |
| EcoRI | GAATTC | 2 cut(s) | 474, 1860 |
| EcoRII | CCWGG | 1 cut(s) | 1512 |
| EcoT22I | ATGCAT | 2 cut(s) | 679, 1323 |
| EcoT38I | GRGCYC | 2 cut(s) | 195, 1762 |
| FaqI | GGGAC | 1 cut(s) | 1645 |
| FauNDI | CATATG | 1 cut(s) | 592 |
| Fnu4HI | GCNGC | 3 cut(s) | 1133, 1230, 1683 |
| FokI | GGATG | 1 cut(s) | 710 |
| FriOI | GRGCYC | 2 cut(s) | 195, 1762 |
| Fsp4HI | GCNGC | 3 cut(s) | 1133, 1230, 1683 |
| FspBI | CTAG | 3 cut(s) | 1226, 1557, 1647 |
| GluI | GCNGC | 3 cut(s) | 1133, 1230, 1683 |
| GsuI | CTGGAG | 1 cut(s) | 63 |
| HaeIII | GGCC | 3 cut(s) | 682, 1095, 1586 |
| HapII | CCGG | 1 cut(s) | 759 |
| HincII | GTYRAC | 1 cut(s) | 1652 |
| HindII | GTYRAC | 1 cut(s) | 1652 |
| HindIII | AAGCTT | 3 cut(s) | 797, 1253, 1871 |
| HinfI | GANTC | 4 cut(s) | 899, 1048, 1359, 1885 |
| HpaII | CCGG | 1 cut(s) | 759 |
| HphI | GGTGA | 3 cut(s) | 734, 989, 1819 |
| Hpy166II | GTNNAC | 1 cut(s) | 1652 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 348, 1630 |
| Hpy8I | GTNNAC | 1 cut(s) | 1652 |
| HpyAV | CCTTC | 3 cut(s) | 54, 1144, 1373 |
| HpyCH4III | ACNGT | 4 cut(s) | 544, 643, 1184, 1543 |
| HpyCH4IV | ACGT | 1 cut(s) | 835 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 338, 626, 845, 930, 1308, 1451, 1592, 1609, 1875 |
| HpyF3I | CTNAG | 3 cut(s) | 347, 854, 1848 |
| HpySE526I | ACGT | 1 cut(s) | 835 |
| Kzo9I | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| LguI | GCTCTTC | 1 cut(s) | 1520 |
| LmnI | GCTCC | 3 cut(s) | 82, 625, 1330 |
| Lsp1109I | GCAGC | 3 cut(s) | 1119, 1216, 1669 |
| LweI | GCATC | 2 cut(s) | 1129, 1432 |
| MabI | ACCWGGT | 1 cut(s) | 1512 |
| MaeI | CTAG | 3 cut(s) | 1226, 1557, 1647 |
| MaeII | ACGT | 1 cut(s) | 835 |
| MaeIII | GTNAC | 7 cut(s) | 271, 750, 977, 1457, 1508, 1516, 1670 |
| MalI | GATC | 6 cut(s) | 162, 726, 780, 1271, 1470, 1896 |
| MboI | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| MboII | GAAGA | 7 cut(s) | 209, 743, 881, 894, 1001, 1334, 1537 |
| MhlI | GDGCHC | 3 cut(s) | 195, 355, 1762 |
| MluCI | AATT | 6 cut(s) | 320, 474, 666, 1313, 1776, 1860 |
| MmeI | TCCRAC | 1 cut(s) | 1352 |
| Mph1103I | ATGCAT | 2 cut(s) | 679, 1323 |
| MseI | TTAA | 5 cut(s) | 669, 821, 965, 1053, 1104 |
| MslI | CAYNNNNRTG | 3 cut(s) | 534, 838, 1400 |
| MspA1I | CMGCKG | 2 cut(s) | 149, 1813 |
| MspI | CCGG | 1 cut(s) | 759 |
| MspR9I | CCNGG | 2 cut(s) | 759, 1514 |
| MvaI | CCWGG | 1 cut(s) | 1514 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 338, 626, 845, 930, 1308, 1451, 1592, 1609, 1875 |
| NciI | CCSGG | 1 cut(s) | 759 |
| NdeI | CATATG | 1 cut(s) | 592 |
| NdeII | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| NlaIV | GGNNCC | 2 cut(s) | 1381, 1640 |
| NmuCI | GTSAC | 2 cut(s) | 977, 1670 |
| NsiI | ATGCAT | 2 cut(s) | 679, 1323 |
| NspI | RCATGY | 1 cut(s) | 1325 |
| NspV | TTCGAA | 2 cut(s) | 472, 1018 |
| PaeI | GCATGC | 1 cut(s) | 1325 |
| PagI | TCATGA | 4 cut(s) | 367, 775, 1714, 1804 |
| PceI | AGGCCT | 1 cut(s) | 1095 |
| PciSI | GCTCTTC | 1 cut(s) | 1520 |
| PfeI | GAWTC | 4 cut(s) | 899, 1048, 1359, 1885 |
| PkrI | GCNGC | 3 cut(s) | 1134, 1231, 1684 |
| PmaCI | CACGTG | 1 cut(s) | 836 |
| PmlI | CACGTG | 1 cut(s) | 836 |
| Ppu21I | YACGTR | 1 cut(s) | 836 |
| PpuMI | RGGWCCY | 1 cut(s) | 245 |
| PshBI | ATTAAT | 1 cut(s) | 669 |
| PsiI | TTATAA | 2 cut(s) | 315, 516 |
| Psp124BI | GAGCTC | 1 cut(s) | 1762 |
| Psp5II | RGGWCCY | 1 cut(s) | 245 |
| Psp6I | CCWGG | 1 cut(s) | 1512 |
| PspCI | CACGTG | 1 cut(s) | 836 |
| PspEI | GGTNACC | 2 cut(s) | 750, 1508 |
| PspGI | CCWGG | 1 cut(s) | 1512 |
| PspN4I | GGNNCC | 2 cut(s) | 1381, 1640 |
| PspPI | GGNCC | 1 cut(s) | 245 |
| PspPPI | RGGWCCY | 1 cut(s) | 245 |
| PstI | CTGCAG | 1 cut(s) | 211 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1568 |
| PvuII | CAGCTG | 2 cut(s) | 149, 1813 |
| RsaI | GTAC | 1 cut(s) | 864 |
| RsaNI | GTAC | 1 cut(s) | 863 |
| RseI | CAYNNNNRTG | 3 cut(s) | 534, 838, 1400 |
| SacI | GAGCTC | 1 cut(s) | 1762 |
| SapI | GCTCTTC | 1 cut(s) | 1520 |
| SaqAI | TTAA | 5 cut(s) | 669, 821, 965, 1053, 1104 |
| SatI | GCNGC | 3 cut(s) | 1133, 1230, 1683 |
| Sau3AI | GATC | 6 cut(s) | 160, 724, 778, 1269, 1468, 1894 |
| Sau96I | GGNCC | 1 cut(s) | 245 |
| ScaI | AGTACT | 1 cut(s) | 864 |
| ScrFI | CCNGG | 2 cut(s) | 759, 1514 |
| SduI | GDGCHC | 3 cut(s) | 195, 355, 1762 |
| SexAI | ACCWGGT | 1 cut(s) | 1512 |
| SfaNI | GCATC | 2 cut(s) | 1129, 1432 |
| SfcI | CTRYAG | 2 cut(s) | 207, 495 |
| SfuI | TTCGAA | 2 cut(s) | 472, 1018 |
| SinI | GGWCC | 1 cut(s) | 245 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 534, 838, 1400 |
| SmlI | CTYRAG | 1 cut(s) | 1761 |
| SmoI | CTYRAG | 1 cut(s) | 1761 |
| SpeI | ACTAGT | 1 cut(s) | 1646 |
| SphI | GCATGC | 1 cut(s) | 1325 |
| Sse9I | AATT | 6 cut(s) | 320, 474, 666, 1313, 1776, 1860 |
| SseBI | AGGCCT | 1 cut(s) | 1095 |
| SspI | AATATT | 1 cut(s) | 1058 |
| SspMI | CTAG | 3 cut(s) | 1226, 1557, 1647 |
| SstI | GAGCTC | 1 cut(s) | 1762 |
| StuI | AGGCCT | 1 cut(s) | 1095 |
| StyD4I | CCNGG | 2 cut(s) | 757, 1512 |
| TaaI | ACNGT | 4 cut(s) | 544, 643, 1184, 1543 |
| TaiI | ACGT | 1 cut(s) | 838 |
| TaqI | TCGA | 7 cut(s) | 472, 1018, 1276, 1734, 1756, 1798, 1858 |
| TasI | AATT | 6 cut(s) | 320, 474, 666, 1313, 1776, 1860 |
| TatI | WGTACW | 1 cut(s) | 862 |
| TfiI | GAWTC | 4 cut(s) | 899, 1048, 1359, 1885 |
| Tru1I | TTAA | 5 cut(s) | 669, 821, 965, 1053, 1104 |
| Tru9I | TTAA | 5 cut(s) | 669, 821, 965, 1053, 1104 |
| TscAI | CASTG | 4 cut(s) | 538, 1444, 1597, 1849 |
| TseFI | GTSAC | 2 cut(s) | 977, 1670 |
| TseI | GCWGC | 3 cut(s) | 1132, 1229, 1682 |
| Tsp45I | GTSAC | 2 cut(s) | 977, 1670 |
| TspGWI | ACGGA | 2 cut(s) | 99, 1372 |
| TspRI | CASTG | 4 cut(s) | 538, 1444, 1597, 1849 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| VspI | ATTAAT | 1 cut(s) | 669 |
| XapI | RAATTY | 3 cut(s) | 320, 474, 1860 |
| XceI | RCATGY | 1 cut(s) | 1325 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 937, 1862 |
| XspI | CTAG | 3 cut(s) | 1226, 1557, 1647 |
| ZrmI | AGTACT | 1 cut(s) | 864 |
| Zsp2I | ATGCAT | 2 cut(s) | 679, 1323 |