beta-galactosidase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 1 - 65 | 3e-11 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 118 - 168 | 3.5e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 181 - 282 | 1.1e-11 | Integrase core domain |
| SH3_retrovirus | PF25597 | 360 - 417 | 7.6e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 644 - 886 | 1.7e-75 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1621, 2251 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 402 |
| Acc36I | ACCTGC | 4 cut(s) | 1621, 2251, 2924, 2943 |
| Acc65I | GGTACC | 1 cut(s) | 2355 |
| AccB1I | GGYRCC | 1 cut(s) | 2355 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2316 |
| AccI | GTMKAC | 3 cut(s) | 1787, 1991, 2957 |
| AccIII | TCCGGA | 1 cut(s) | 2909 |
| AciI | CCGC | 1 cut(s) | 1604 |
| AclWI | GGATC | 3 cut(s) | 1449, 1500, 2031 |
| AcoI | YGGCCR | 4 cut(s) | 1509, 2103, 2323, 2728 |
| AcsI | RAATTY | 3 cut(s) | 2469, 2501, 3097 |
| AcuI | CTGAAG | 3 cut(s) | 1584, 3063, 3303 |
| AfaI | GTAC | 9 cut(s) | 311, 541, 721, 1933, 2030, 2127, 2245, 2357, 2694 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 89, 998, 1015, 1277, 2240, 2316, 2870 |
| AflII | CTTAAG | 1 cut(s) | 1136 |
| AflIII | ACRYGT | 2 cut(s) | 570, 3208 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1272 |
| AjiI | CACGTC | 1 cut(s) | 571 |
| AjnI | CCWGG | 4 cut(s) | 650, 1957, 2233, 2863 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2522, 2554 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1325, 1357 |
| Alw21I | GWGCWC | 1 cut(s) | 206 |
| Alw26I | GTCTC | 9 cut(s) | 61, 162, 280, 906, 1612, 1848, 2081, 2310, 2749 |
| AlwI | GGATC | 3 cut(s) | 1449, 1500, 2031 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1532 |
| Aor13HI | TCCGGA | 1 cut(s) | 2909 |
| AoxI | GGCC | 7 cut(s) | 945, 1509, 2103, 2156, 2323, 2728, 3064 |
| ApeKI | GCWGC | 3 cut(s) | 1814, 2141, 3161 |
| ApoI | RAATTY | 3 cut(s) | 2469, 2501, 3097 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 59, 91, 817, 849 |
| AseI | ATTAAT | 1 cut(s) | 2876 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2186, 2469, 2534 |
| Asp718I | GGTACC | 1 cut(s) | 2355 |
| AspS9I | GGNCC | 2 cut(s) | 578, 3064 |
| AvaII | GGWCC | 1 cut(s) | 578 |
| BaeGI | GKGCMC | 1 cut(s) | 150 |
| BalI | TGGCCA | 1 cut(s) | 2105 |
| BanI | GGYRCC | 1 cut(s) | 2355 |
| BanII | GRGCYC | 1 cut(s) | 1135 |
| BauI | CACGAG | 4 cut(s) | 51, 1065, 2556, 2752 |
| BbsI | GAAGAC | 2 cut(s) | 1548, 1973 |
| Bbv12I | GWGCWC | 1 cut(s) | 206 |
| BbvI | GCAGC | 3 cut(s) | 1826, 2128, 3148 |
| BceAI | ACGGC | 2 cut(s) | 826, 932 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1895, 1929 |
| BciT130I | CCWGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| BciVI | GTATCC | 1 cut(s) | 2906 |
| BclI | TGATCA | 1 cut(s) | 258 |
| BcoDI | GTCTC | 9 cut(s) | 61, 162, 280, 906, 1612, 1848, 2081, 2310, 2749 |
| BfaI | CTAG | 7 cut(s) | 468, 513, 537, 1128, 1851, 2600, 3036 |
| BfmI | CTRYAG | 1 cut(s) | 1550 |
| BfrI | CTTAAG | 1 cut(s) | 1136 |
| BfuAI | ACCTGC | 4 cut(s) | 1621, 2251, 2924, 2943 |
| BfuI | GTATCC | 1 cut(s) | 2906 |
| BglII | AGATCT | 2 cut(s) | 274, 509 |
| BisI | GCNGC | 3 cut(s) | 1815, 2142, 3162 |
| BlsI | GCNGC | 3 cut(s) | 1816, 2143, 3163 |
| BmcAI | AGTACT | 1 cut(s) | 541 |
| Bme1390I | CCNGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| Bme18I | GGWCC | 1 cut(s) | 578 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1272 |
| BmgBI | CACGTC | 1 cut(s) | 571 |
| BmgT120I | GGNCC | 2 cut(s) | 578, 3064 |
| BmiI | GGNNCC | 2 cut(s) | 579, 2357 |
| BmrFI | CCNGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| BmrI | ACTGGG | 3 cut(s) | 1695, 2802, 2938 |
| BmsI | GCATC | 7 cut(s) | 721, 1114, 1231, 1855, 1903, 2815, 2911 |
| BmuI | ACTGGG | 3 cut(s) | 1695, 2802, 2938 |
| BpiI | GAAGAC | 2 cut(s) | 1548, 1973 |
| BpmI | CTGGAG | 2 cut(s) | 2274, 2847 |
| Bpu10I | CCTNAGC | 2 cut(s) | 846, 1755 |
| BpuEI | CTTGAG | 3 cut(s) | 1034, 1330, 1940 |
| Bsa29I | ATCGAT | 1 cut(s) | 630 |
| BsaAI | YACGTR | 1 cut(s) | 1935 |
| BsaI | GGTCTC | 3 cut(s) | 906, 1612, 2749 |
| BsaJI | CCNNGG | 8 cut(s) | 120, 651, 808, 1218, 1714, 1958, 2864, 3067 |
| BsaWI | WCCGGW | 2 cut(s) | 1489, 2909 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 933, 963, 1506, 1536, 1931, 1961, 2247, 2277 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 89, 998, 1015, 1277, 2240, 2316, 2870 |
| Bse118I | RCCGGY | 2 cut(s) | 2325, 2730 |
| Bse1I | ACTGG | 9 cut(s) | 83, 1486, 1504, 1701, 2099, 2257, 2639, 2808, 2933 |
| Bse3DI | GCAATG | 2 cut(s) | 1474, 1902 |
| BseAI | TCCGGA | 1 cut(s) | 2909 |
| BseBI | CCWGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| BseCI | ATCGAT | 1 cut(s) | 630 |
| BseDI | CCNNGG | 8 cut(s) | 120, 651, 808, 1218, 1714, 1958, 2864, 3067 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 89, 998, 1015, 1277, 2240, 2316, 2870 |
| BseMI | GCAATG | 2 cut(s) | 1474, 1902 |
| BseMII | CTCAG | 6 cut(s) | 219, 269, 362, 837, 1329, 2075 |
| BseNI | ACTGG | 9 cut(s) | 83, 1486, 1504, 1701, 2099, 2257, 2639, 2808, 2933 |
| BseRI | GAGGAG | 1 cut(s) | 1260 |
| BseSI | GKGCMC | 1 cut(s) | 150 |
| BseX3I | CGGCCG | 1 cut(s) | 1509 |
| BseXI | GCAGC | 3 cut(s) | 1826, 2128, 3148 |
| BsgI | GTGCAG | 1 cut(s) | 1880 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1512, 3199 |
| BshFI | GGCC | 7 cut(s) | 947, 1511, 2105, 2158, 2325, 2730, 3066 |
| BshNI | GGYRCC | 1 cut(s) | 2355 |
| BshVI | ATCGAT | 1 cut(s) | 630 |
| BsiEI | CGRYCG | 2 cut(s) | 1512, 3199 |
| BsiHKAI | GWGCWC | 1 cut(s) | 206 |
| BsiSI | CCGG | 5 cut(s) | 1490, 1512, 2326, 2731, 2910 |
| BslFI | GGGAC | 1 cut(s) | 992 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 89, 998, 1015, 1277, 2240, 2316, 2870 |
| BsmAI | GTCTC | 9 cut(s) | 61, 162, 280, 906, 1612, 1848, 2081, 2310, 2749 |
| BsmFI | GGGAC | 1 cut(s) | 992 |
| BsmI | GAATGC | 4 cut(s) | 612, 2186, 2188, 3357 |
| BsnI | GGCC | 7 cut(s) | 947, 1511, 2105, 2158, 2325, 2730, 3066 |
| Bso31I | GGTCTC | 3 cut(s) | 906, 1612, 2749 |
| Bsp1286I | GDGCHC | 3 cut(s) | 150, 206, 1135 |
| Bsp13I | TCCGGA | 1 cut(s) | 2909 |
| Bsp19I | CCATGG | 2 cut(s) | 120, 1218 |
| BspACI | CCGC | 1 cut(s) | 1604 |
| BspANI | GGCC | 7 cut(s) | 947, 1511, 2105, 2158, 2325, 2730, 3066 |
| BspCNI | CTCAG | 6 cut(s) | 218, 270, 363, 838, 1330, 2074 |
| BspDI | ATCGAT | 1 cut(s) | 630 |
| BspEI | TCCGGA | 1 cut(s) | 2909 |
| BspHI | TCATGA | 2 cut(s) | 790, 2340 |
| BspLI | GGNNCC | 2 cut(s) | 579, 2357 |
| BspMAI | CTGCAG | 1 cut(s) | 1554 |
| BspMI | ACCTGC | 4 cut(s) | 1621, 2251, 2924, 2943 |
| BspPI | GGATC | 3 cut(s) | 1449, 1500, 2031 |
| BspQI | GCTCTTC | 1 cut(s) | 2999 |
| BspT107I | GGYRCC | 1 cut(s) | 2355 |
| BspTI | CTTAAG | 1 cut(s) | 1136 |
| BspTNI | GGTCTC | 3 cut(s) | 906, 1612, 2749 |
| BsrDI | GCAATG | 2 cut(s) | 1474, 1902 |
| BsrFI | RCCGGY | 2 cut(s) | 2325, 2730 |
| BsrI | ACTGG | 9 cut(s) | 83, 1486, 1504, 1701, 2099, 2257, 2639, 2808, 2933 |
| BssAI | RCCGGY | 2 cut(s) | 2325, 2730 |
| BssECI | CCNNGG | 8 cut(s) | 120, 651, 808, 1218, 1714, 1958, 2864, 3067 |
| BssNAI | GTATAC | 1 cut(s) | 1992 |
| BssSI | CACGAG | 4 cut(s) | 51, 1065, 2556, 2752 |
| BssT1I | CCWWGG | 2 cut(s) | 120, 1218 |
| Bst1107I | GTATAC | 1 cut(s) | 1992 |
| Bst2BI | CACGAG | 4 cut(s) | 51, 1065, 2556, 2752 |
| Bst2UI | CCWGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| Bst4CI | ACNGT | 8 cut(s) | 291, 1809, 1903, 1972, 1996, 2169, 2894, 3291 |
| Bst6I | CTCTTC | 4 cut(s) | 999, 1851, 2205, 2999 |
| BstAFI | CTTAAG | 1 cut(s) | 1136 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 71 |
| BstBAI | YACGTR | 1 cut(s) | 1935 |
| BstC8I | GCNNGC | 2 cut(s) | 2610, 3031 |
| BstDSI | CCRYGG | 4 cut(s) | 120, 808, 1218, 1714 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 996 |
| BstMAI | GTCTC | 9 cut(s) | 61, 162, 280, 906, 1612, 1848, 2081, 2310, 2749 |
| BstMCI | CGRYCG | 2 cut(s) | 1512, 3199 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 71, 698, 2102, 2930 |
| BstNI | CCWGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| BstNSI | RCATGY | 3 cut(s) | 310, 925, 3212 |
| BstSCI | CCNGG | 4 cut(s) | 650, 1957, 2233, 2863 |
| BstSFI | CTRYAG | 1 cut(s) | 1550 |
| BstSLI | GKGCMC | 1 cut(s) | 150 |
| BstV1I | GCAGC | 3 cut(s) | 1826, 2128, 3148 |
| BstV2I | GAAGAC | 2 cut(s) | 1548, 1973 |
| BstX2I | RGATCY | 3 cut(s) | 274, 509, 1441 |
| BstYI | RGATCY | 3 cut(s) | 274, 509, 1441 |
| BstZ17I | GTATAC | 1 cut(s) | 1992 |
| BstZI | CGGCCG | 1 cut(s) | 1509 |
| Bsu15I | ATCGAT | 1 cut(s) | 630 |
| BsuI | GTATCC | 1 cut(s) | 2906 |
| BsuRI | GGCC | 7 cut(s) | 947, 1511, 2105, 2158, 2325, 2730, 3066 |
| BsuTUI | ATCGAT | 1 cut(s) | 630 |
| BtgI | CCRYGG | 4 cut(s) | 120, 808, 1218, 1714 |
| BtrI | CACGTC | 1 cut(s) | 571 |
| BtsIMutI | CAGTG | 5 cut(s) | 2001, 2025, 2106, 2250, 2815 |
| BveI | ACCTGC | 4 cut(s) | 1621, 2251, 2924, 2943 |
| Cac8I | GCNNGC | 2 cut(s) | 2610, 3031 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1532 |
| CciI | TCATGA | 2 cut(s) | 790, 2340 |
| Cfr10I | RCCGGY | 2 cut(s) | 2325, 2730 |
| Cfr13I | GGNCC | 2 cut(s) | 578, 3064 |
| ClaI | ATCGAT | 1 cut(s) | 630 |
| CseI | GACGC | 1 cut(s) | 63 |
| Csp6I | GTAC | 9 cut(s) | 310, 540, 720, 1932, 2029, 2126, 2244, 2356, 2693 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2025, 2060 |
| CviQI | GTAC | 9 cut(s) | 310, 540, 720, 1932, 2029, 2126, 2244, 2356, 2693 |
| DraI | TTTAAA | 2 cut(s) | 1572, 2853 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 402 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1272 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 402 |
| EaeI | YGGCCR | 4 cut(s) | 1509, 2103, 2323, 2728 |
| EagI | CGGCCG | 1 cut(s) | 1509 |
| Eam1104I | CTCTTC | 4 cut(s) | 999, 1851, 2205, 2999 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1272 |
| EarI | CTCTTC | 4 cut(s) | 999, 1851, 2205, 2999 |
| EclXI | CGGCCG | 1 cut(s) | 1509 |
| Eco130I | CCWWGG | 2 cut(s) | 120, 1218 |
| Eco24I | GRGCYC | 1 cut(s) | 1135 |
| Eco31I | GGTCTC | 3 cut(s) | 906, 1612, 2749 |
| Eco47I | GGWCC | 1 cut(s) | 578 |
| Eco52I | CGGCCG | 1 cut(s) | 1509 |
| Eco57I | CTGAAG | 3 cut(s) | 1584, 3063, 3303 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 996 |
| EcoO109I | RGGNCCY | 1 cut(s) | 578 |
| EcoRII | CCWGG | 4 cut(s) | 650, 1957, 2233, 2863 |
| EcoT14I | CCWWGG | 2 cut(s) | 120, 1218 |
| EcoT22I | ATGCAT | 2 cut(s) | 2188, 2802 |
| EcoT38I | GRGCYC | 1 cut(s) | 1135 |
| ErhI | CCWWGG | 2 cut(s) | 120, 1218 |
| FaqI | GGGAC | 1 cut(s) | 992 |
| FauNDI | CATATG | 1 cut(s) | 2820 |
| FbaI | TGATCA | 1 cut(s) | 258 |
| FblI | GTMKAC | 3 cut(s) | 1787, 1991, 2957 |
| Fnu4HI | GCNGC | 3 cut(s) | 1815, 2142, 3162 |
| FriOI | GRGCYC | 1 cut(s) | 1135 |
| Fsp4HI | GCNGC | 3 cut(s) | 1815, 2142, 3162 |
| FspBI | CTAG | 7 cut(s) | 468, 513, 537, 1128, 1851, 2600, 3036 |
| GluI | GCNGC | 3 cut(s) | 1815, 2142, 3162 |
| GsuI | CTGGAG | 2 cut(s) | 2274, 2847 |
| HaeIII | GGCC | 7 cut(s) | 947, 1511, 2105, 2158, 2325, 2730, 3066 |
| HapII | CCGG | 5 cut(s) | 1490, 1512, 2326, 2731, 2910 |
| HgaI | GACGC | 1 cut(s) | 63 |
| HincII | GTYRAC | 3 cut(s) | 778, 1487, 1788 |
| HindII | GTYRAC | 3 cut(s) | 778, 1487, 1788 |
| HindIII | AAGCTT | 2 cut(s) | 1458, 3327 |
| HpaI | GTTAAC | 1 cut(s) | 778 |
| HpaII | CCGG | 5 cut(s) | 1490, 1512, 2326, 2731, 2910 |
| Hpy166II | GTNNAC | 9 cut(s) | 778, 836, 1093, 1487, 1788, 1992, 2331, 2636, 2958 |
| Hpy8I | GTNNAC | 9 cut(s) | 778, 836, 1093, 1487, 1788, 1992, 2331, 2636, 2958 |
| HpyCH4III | ACNGT | 8 cut(s) | 291, 1809, 1903, 1972, 1996, 2169, 2894, 3291 |
| HpyCH4IV | ACGT | 3 cut(s) | 397, 570, 1934 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 71, 698, 2102, 2930 |
| HpySE526I | ACGT | 3 cut(s) | 397, 570, 1934 |
| Kpn2I | TCCGGA | 1 cut(s) | 2909 |
| KpnI | GGTACC | 1 cut(s) | 2359 |
| Ksp22I | TGATCA | 1 cut(s) | 258 |
| KspAI | GTTAAC | 1 cut(s) | 778 |
| LguI | GCTCTTC | 1 cut(s) | 2999 |
| LmnI | GCTCC | 2 cut(s) | 1369, 2866 |
| Lsp1109I | GCAGC | 3 cut(s) | 1826, 2128, 3148 |
| LweI | GCATC | 7 cut(s) | 721, 1114, 1231, 1855, 1903, 2815, 2911 |
| MaeI | CTAG | 7 cut(s) | 468, 513, 537, 1128, 1851, 2600, 3036 |
| MaeII | ACGT | 3 cut(s) | 397, 570, 1934 |
| MfeI | CAATTG | 1 cut(s) | 3165 |
| MflI | RGATCY | 3 cut(s) | 274, 509, 1441 |
| MhlI | GDGCHC | 3 cut(s) | 150, 206, 1135 |
| MlsI | TGGCCA | 1 cut(s) | 2105 |
| MluNI | TGGCCA | 1 cut(s) | 2105 |
| MlyI | GAGTC | 5 cut(s) | 1261, 1336, 2590, 2797, 3332 |
| MmeI | TCCRAC | 2 cut(s) | 826, 1429 |
| Mox20I | TGGCCA | 1 cut(s) | 2105 |
| Mph1103I | ATGCAT | 2 cut(s) | 2188, 2802 |
| MroI | TCCGGA | 1 cut(s) | 2909 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2186, 2469, 2534 |
| MscI | TGGCCA | 1 cut(s) | 2105 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2400, 2444, 2823, 2901 |
| Msp20I | TGGCCA | 1 cut(s) | 2105 |
| MspA1I | CMGCKG | 1 cut(s) | 1604 |
| MspCI | CTTAAG | 1 cut(s) | 1136 |
| MspI | CCGG | 5 cut(s) | 1490, 1512, 2326, 2731, 2910 |
| MspR9I | CCNGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| MunI | CAATTG | 1 cut(s) | 3165 |
| Mva1269I | GAATGC | 4 cut(s) | 612, 2186, 2188, 3357 |
| MvaI | CCWGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 71, 698, 2102, 2930 |
| NcoI | CCATGG | 2 cut(s) | 120, 1218 |
| NdeI | CATATG | 1 cut(s) | 2820 |
| NlaIV | GGNNCC | 2 cut(s) | 579, 2357 |
| NmeAIII | GCCGAG | 1 cut(s) | 3092 |
| NmuCI | GTSAC | 6 cut(s) | 878, 1213, 1264, 2410, 2446, 2894 |
| NsiI | ATGCAT | 2 cut(s) | 2188, 2802 |
| NspI | RCATGY | 3 cut(s) | 310, 925, 3212 |
| PagI | TCATGA | 2 cut(s) | 790, 2340 |
| PaqCI | CACCTGC | 2 cut(s) | 1621, 2251 |
| PciI | ACATGT | 1 cut(s) | 3208 |
| PciSI | GCTCTTC | 1 cut(s) | 2999 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 874, 1711 |
| PctI | GAATGC | 4 cut(s) | 612, 2186, 2188, 3357 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2186, 2469, 2534 |
| PfeI | GAWTC | 5 cut(s) | 464, 677, 1105, 1334, 1825 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2316 |
| PfoI | TCCNGGA | 1 cut(s) | 2233 |
| PkrI | GCNGC | 3 cut(s) | 1816, 2143, 3163 |
| Ple19I | CGATCG | 1 cut(s) | 3199 |
| PleI | GAGTC | 5 cut(s) | 1261, 1335, 2589, 2796, 3332 |
| PpsI | GAGTC | 5 cut(s) | 1261, 1335, 2589, 2796, 3332 |
| Ppu21I | YACGTR | 1 cut(s) | 1935 |
| PpuMI | RGGWCCY | 1 cut(s) | 578 |
| PscI | ACATGT | 1 cut(s) | 3208 |
| PshBI | ATTAAT | 1 cut(s) | 2876 |
| Psp5II | RGGWCCY | 1 cut(s) | 578 |
| Psp6I | CCWGG | 4 cut(s) | 650, 1957, 2233, 2863 |
| PspGI | CCWGG | 4 cut(s) | 650, 1957, 2233, 2863 |
| PspN4I | GGNNCC | 2 cut(s) | 579, 2357 |
| PspPI | GGNCC | 2 cut(s) | 578, 3064 |
| PspPPI | RGGWCCY | 1 cut(s) | 578 |
| PstI | CTGCAG | 1 cut(s) | 1554 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1532 |
| PsuI | RGATCY | 3 cut(s) | 274, 509, 1441 |
| PvuI | CGATCG | 1 cut(s) | 3199 |
| RsaI | GTAC | 9 cut(s) | 311, 541, 721, 1933, 2030, 2127, 2245, 2357, 2694 |
| RsaNI | GTAC | 9 cut(s) | 310, 540, 720, 1932, 2029, 2126, 2244, 2356, 2693 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2400, 2444, 2823, 2901 |
| SalI | GTCGAC | 1 cut(s) | 1786 |
| SapI | GCTCTTC | 1 cut(s) | 2999 |
| SatI | GCNGC | 3 cut(s) | 1815, 2142, 3162 |
| Sau96I | GGNCC | 2 cut(s) | 578, 3064 |
| ScaI | AGTACT | 1 cut(s) | 541 |
| SchI | GAGTC | 5 cut(s) | 1261, 1336, 2590, 2797, 3332 |
| ScrFI | CCNGG | 4 cut(s) | 652, 1959, 2235, 2865 |
| SduI | GDGCHC | 3 cut(s) | 150, 206, 1135 |
| SfaNI | GCATC | 7 cut(s) | 721, 1114, 1231, 1855, 1903, 2815, 2911 |
| SfcI | CTRYAG | 1 cut(s) | 1550 |
| SinI | GGWCC | 1 cut(s) | 578 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2400, 2444, 2823, 2901 |
| SmlI | CTYRAG | 4 cut(s) | 1013, 1136, 1345, 1919 |
| SmoI | CTYRAG | 4 cut(s) | 1013, 1136, 1345, 1919 |
| SsiI | CCGC | 1 cut(s) | 1604 |
| SspI | AATATT | 3 cut(s) | 797, 2534, 2941 |
| SspMI | CTAG | 7 cut(s) | 468, 513, 537, 1128, 1851, 2600, 3036 |
| StyD4I | CCNGG | 4 cut(s) | 650, 1957, 2233, 2863 |
| StyI | CCWWGG | 2 cut(s) | 120, 1218 |
| TaaI | ACNGT | 8 cut(s) | 291, 1809, 1903, 1972, 1996, 2169, 2894, 3291 |
| TaiI | ACGT | 3 cut(s) | 400, 573, 1937 |
| TaqI | TCGA | 7 cut(s) | 524, 630, 1787, 1905, 2655, 3223, 3320 |
| TaqII | GACCGA | 1 cut(s) | 888 |
| TatI | WGTACW | 1 cut(s) | 539 |
| TfiI | GAWTC | 5 cut(s) | 464, 677, 1105, 1334, 1825 |
| TscAI | CASTG | 5 cut(s) | 2001, 2025, 2106, 2257, 2815 |
| TseFI | GTSAC | 6 cut(s) | 878, 1213, 1264, 2410, 2446, 2894 |
| TseI | GCWGC | 3 cut(s) | 1814, 2141, 3161 |
| Tsp45I | GTSAC | 6 cut(s) | 878, 1213, 1264, 2410, 2446, 2894 |
| TspGWI | ACGGA | 3 cut(s) | 883, 1382, 1436 |
| TspRI | CASTG | 5 cut(s) | 2001, 2025, 2106, 2257, 2815 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2316 |
| Vha464I | CTTAAG | 1 cut(s) | 1136 |
| VpaK11BI | GGWCC | 1 cut(s) | 578 |
| VspI | ATTAAT | 1 cut(s) | 2876 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 996 |
| XapI | RAATTY | 3 cut(s) | 2469, 2501, 3097 |
| XceI | RCATGY | 3 cut(s) | 310, 925, 3212 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2723 |
| XmiI | GTMKAC | 3 cut(s) | 1787, 1991, 2957 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2186, 2469, 2534 |
| XspI | CTAG | 7 cut(s) | 468, 513, 537, 1128, 1851, 2600, 3036 |
| ZrmI | AGTACT | 1 cut(s) | 541 |
| Zsp2I | ATGCAT | 2 cut(s) | 2188, 2802 |