RchiOBHm_Chr3g0466641

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000071
Physical Location & Seq
Reverse (-)
13052261 .. 13054632
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43270

Sequence Viewer

Length: 2055 bp
ATGGATGTTACTTTCTTTGAGGACATGAGTTACTTTTCCTCTTCAGATACAGCTCTTCAGGGGAAGAATTCATTTTTTGAAGAGCTGTATCATGGAGAGGGGGAGGAATCAGAAGGAGGAGAAGAAGCAGGTGGTATTTTGACTGATCCAGTTGAGACCATTAGCTCGGCGTCTCCAGAAGCTGAAGCTCCAAACATCCAAGCACCAGTTTCTATGGCTGAAAATGATGTTGAAGACACAACTGTCCCTCCTACCATTGCTTCTACCCCTGACCCACAACTTCCTGGTACTGAAGATCACTCATTTGAGGTATGTCCACCCACTAGTACTAGTAGTAATGAGTCTAATGTTGGGCAATATGTGTTACCAAATAGGATCACTCGGGGTCAATCAGCCAAAAGATATGAACCTACTCTTACTGCCAAATCAAAATACCCAGTAGCCAATTATATGTCCACTAGGAGGTTGTCTAAGTCATATGAATCTTTTGTGAATCAAATATCTGCTGTATCAGTACCTAACAAAGTGCAGGATGCATTGGGGGATCCAAAGTGGAGGAAGGCAATGGAGGAAGAGATGGAGGCGTTACAGAAGAGCAATACTTGGCAACTTGTGCCTCCACCACAAGGCAAGAAGGCTGTAGGGTGTCGTTGGGTGTTTACCGTGAAGCATAATGCAGATGGATCAGTGAATCGGTACAAAGCACGCCTTGTAGCAAAGGGGTTTACTCAGACGTATGGTATAGACTATGATGAAACGTTTGCTCCTGTTGCCAAGATGAACACTATTCGAGTTCTTCTTTCGTTTGCTGCTAATTTAAACTGGCCACTCCGACAGTTCGATGTCAAGAATGCATTTCTTCATGGAGAGTTAACCGAGGAAGTGTACATGAGCCTTCCACCTGGGTATGTAGCTGCTTCTCCTGGTGATTTTGTATGCAAGTTGAGAAAGTCTCTGTATGGTCTCAAACAATCGCCTCGTGCTTGGTTTGGGAGATTTTCACAATTCATGCGAAAGGTTGGTTACAAACAGAGCAACTCAGATCATACCTTGTTTCTCAAGCATCAACAAGGGAAGGTAACAGCTCTAATTATCTATGTGGATGATATGGTAATCACCGGCAATGATACTGTTGAGATGGATAGACTGCAGAGACAGCTAGCCTCTGAGTTTGAGATGAAGGACTTAGGTGAACTTAAGTACTTCTTAGGAATTGAGGTAGCCAGGGGGAGAGAAGGGATCTACCTGTGCCAGAGGAAGTACGTTCTTGACTTGCTAACAGAAACAGGTTTGTTGGATTGTAGACCTATAGATACTCCTATTGAGCAGAATCATTGTTTAGCTGAGTATCCAGATCAAGTACCTACTGATCGAGCTTGCTATCAGAGGTTAGTAGGGCGCTTAATTTATTTGGCTCATACTAGACCAGATATTGCATATGCAGTGAGTGTGGTGAGTCAGTTCATGCATAACCCAAGTGAGAGTCACATGGATGCTGTTATGAGAATTTTAAAGTACCTGAAGTCAGCTCCAGGAAGGGGAGTATTGTTTTCTAAACACAACAACATCCTTGAGGTTTGTGGCTTTACAGATGCAGATTGGGCTGGAAATATTACAGACAGGAGGTCAACATCAGGTTACTTTACATTTGTAGGAGGTAATTTGGTTACATGGAAGAGTAAGAAACAGAAAGTTGTGGCACGATCTAGTGCTGAGGCCGAGTATAGAGGTATGGCTCACGGAGTGTGTGAATTGTTGTGGCTGAGAAATCTATTACGTGATCTGGGTTTCAAACTCGAAAGTACTATGCAGTTGTATTGTGATAACAAGGCAGCCATTGACATATCACAGAATCCAGTACAACATGATCGTACTAAGCATGTGGAGGTTGATCGTCACTTTATAAAGGAGAAGCTAGATGCCAAAATTATTAGCTTTCCTTTTGTTCCAACTGAAGAGCAACTTGCAGATATACTTACCAAAGGAGTTTCTAGGAAGGCATTTTATGACTCACTAAGCAAGTTGGGCATGGTTGATGTATATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

684

Amino Acids

76.88

Weight (kDa)

6.07

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 200 - 442 5.9e-76 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1904
AarI CACCTGC 1 cut(s) 119
AasI GACNNNNNNGTC 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 1303
AclI AACGTT 1 cut(s) 758
AclWI GGATC 6 cut(s) 140, 383, 539, 552, 691, 1247
AcoI YGGCCR 1 cut(s) 824
AcsI RAATTY 2 cut(s) 67, 1506
AcuI CTGAAG 6 cut(s) 27, 41, 204, 312, 1541, 1974
AcyI GRCGYC 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 1744
AfiI CCNNNNNNNGG 3 cut(s) 462, 626, 1538
AflII CTTAAG 1 cut(s) 1196
AgsI TTSAA 3 cut(s) 80, 233, 1792
AhdI GACNNNNNGTC 1 cut(s) 1624
AhlI ACTAGT 2 cut(s) 323, 329
AjnI CCWGG 5 cut(s) 283, 901, 922, 1223, 1531
Alw26I GTCTC 5 cut(s) 149, 177, 957, 968, 1147
AlwI GGATC 6 cut(s) 140, 383, 539, 552, 691, 1247
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 2 cut(s) 824, 1716
ApeKI GCWGC 3 cut(s) 809, 914, 1832
ApoI RAATTY 2 cut(s) 67, 1506
AspLEI GCGC 2 cut(s) 1401, 2047
AsuHPI GGTGA 4 cut(s) 938, 1108, 1202, 1465
AsuNHI GCTAGC 1 cut(s) 1159
AvaI CYCGRG 1 cut(s) 381
BalI TGGCCA 1 cut(s) 826
BamHI GGATCC 1 cut(s) 544
BauI CACGAG 1 cut(s) 978
BbsI GAAGAC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 1713
BbvI GCAGC 3 cut(s) 796, 901, 1844
BccI CCATC 3 cut(s) 571, 674, 1132
BciT130I CCWGG 5 cut(s) 285, 903, 924, 1225, 1533
BciVI GTATCC 1 cut(s) 1359
BcoDI GTCTC 5 cut(s) 149, 177, 957, 968, 1147
BcuI ACTAGT 2 cut(s) 323, 329
BfaI CTAG 8 cut(s) 324, 330, 459, 1160, 1422, 1707, 1916, 1992
BfmI CTRYAG 3 cut(s) 639, 1148, 1308
BfoI RGCGCY 1 cut(s) 1402
BfrI CTTAAG 1 cut(s) 1196
BfuAI ACCTGC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 1359
BisI GCNGC 3 cut(s) 810, 915, 1833
BlsI GCNGC 3 cut(s) 811, 916, 1834
BmcAI AGTACT 3 cut(s) 328, 1202, 1804
Bme1390I CCNGG 5 cut(s) 285, 903, 924, 1225, 1533
BmeRI GACNNNNNGTC 1 cut(s) 1624
BmeT110I CYCGRG 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 5 cut(s) 285, 903, 924, 1225, 1533
BmrI ACTGGG 1 cut(s) 431
BmsI GCATC 5 cut(s) 523, 1072, 1483, 1582, 1909
BmtI GCTAGC 1 cut(s) 1163
BmuI ACTGGG 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 937, 969
BpmI CTGGAG 2 cut(s) 159, 1515
Bpu10I CCTNAGC 1 cut(s) 1713
BpuEI CTTGAG 2 cut(s) 1043, 1592
BsaAI YACGTR 1 cut(s) 1778
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 149, 968
BsaJI CCNNGG 3 cut(s) 876, 902, 1224
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 748, 778
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 626, 1538
Bse118I RCCGGY 1 cut(s) 1118
Bse1I ACTGG 5 cut(s) 149, 206, 437, 827, 1856
Bse3DI GCAATG 3 cut(s) 255, 570, 1129
BseBI CCWGG 5 cut(s) 285, 903, 924, 1225, 1533
BseDI CCNNGG 3 cut(s) 876, 902, 1224
BseGI GGATG 6 cut(s) 10, 195, 538, 1108, 1498, 1566
BseLI CCNNNNNNNGG 3 cut(s) 462, 626, 1538
BseMI GCAATG 3 cut(s) 255, 570, 1129
BseMII CTCAG 6 cut(s) 743, 1053, 1158, 1335, 1704, 1754
BseNI ACTGG 5 cut(s) 149, 206, 437, 827, 1856
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 796, 901, 1844
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 2 cut(s) 826, 1718
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 1 cut(s) 1119
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 462, 626, 1538
BsmAI GTCTC 5 cut(s) 149, 177, 957, 968, 1147
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 2 cut(s) 826, 1718
Bso31I GGTCTC 2 cut(s) 149, 968
BsoBI CYCGRG 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 885
BspANI GGCC 2 cut(s) 826, 1718
BspCNI CTCAG 6 cut(s) 742, 1052, 1159, 1336, 1705, 1755
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 1152
BspMI ACCTGC 1 cut(s) 119
BspOI GCTAGC 1 cut(s) 1163
BspPI GGATC 6 cut(s) 140, 383, 539, 552, 691, 1247
BspQI GCTCTTC 4 cut(s) 60, 75, 587, 1950
BspTI CTTAAG 1 cut(s) 1196
BspTNI GGTCTC 2 cut(s) 149, 968
BsrDI GCAATG 3 cut(s) 255, 570, 1129
BsrFI RCCGGY 1 cut(s) 1118
BsrGI TGTACA 1 cut(s) 885
BsrI ACTGG 5 cut(s) 149, 206, 437, 827, 1856
BssAI RCCGGY 1 cut(s) 1118
BssECI CCNNGG 3 cut(s) 876, 902, 1224
BssNI GRCGYC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 978
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 5 cut(s) 285, 903, 924, 1225, 1533
Bst4CI ACNGT 4 cut(s) 244, 664, 837, 1132
Bst6I CTCTTC 7 cut(s) 46, 60, 75, 567, 587, 1670, 1950
BstACI GRCGYC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 1196
BstAPI GCANNNNNTGC 1 cut(s) 613
BstAUI TGTACA 1 cut(s) 885
BstBAI YACGTR 1 cut(s) 1778
BstC8I GCNNGC 3 cut(s) 706, 1161, 1378
BstF5I GGATG 6 cut(s) 10, 195, 538, 1108, 1498, 1566
BstH2I RGCGCY 1 cut(s) 1402
BstHHI GCGC 2 cut(s) 1401, 2047
BstMAI GTCTC 5 cut(s) 149, 177, 957, 968, 1147
BstMWI GCNNNNNNNGC 5 cut(s) 613, 770, 1156, 1601, 2025
BstNI CCWGG 5 cut(s) 285, 903, 924, 1225, 1533
BstNSI RCATGY 1 cut(s) 1883
BstSCI CCNGG 5 cut(s) 283, 901, 922, 1223, 1531
BstSFI CTRYAG 3 cut(s) 639, 1148, 1308
BstV1I GCAGC 3 cut(s) 796, 901, 1844
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 2 cut(s) 544, 1239
BstYI RGATCY 2 cut(s) 544, 1239
BsuI GTATCC 1 cut(s) 1359
BsuRI GGCC 2 cut(s) 826, 1718
BtsCI GGATG 6 cut(s) 10, 195, 538, 1108, 1498, 1566
BtsI GCAGTG 1 cut(s) 1449
BtsIMutI CAGTG 2 cut(s) 693, 1449
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 3 cut(s) 706, 1161, 1378
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 2 cut(s) 1401, 2047
Cfr10I RCCGGY 1 cut(s) 1118
CseI GACGC 1 cut(s) 159
DraI TTTAAA 2 cut(s) 819, 1512
DraIII CACNNNGTG 1 cut(s) 1744
DrdI GACNNNNNNGTC 1 cut(s) 242
DriI GACNNNNNGTC 1 cut(s) 1624
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 824
Eam1104I CTCTTC 7 cut(s) 46, 60, 75, 567, 587, 1670, 1950
Eam1105I GACNNNNNGTC 1 cut(s) 1624
EarI CTCTTC 7 cut(s) 46, 60, 75, 567, 587, 1670, 1950
Eco31I GGTCTC 2 cut(s) 149, 968
Eco57I CTGAAG 6 cut(s) 27, 41, 204, 312, 1541, 1974
Eco88I CYCGRG 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 5 cut(s) 283, 901, 922, 1223, 1531
EcoT22I ATGCAT 3 cut(s) 538, 856, 1470
Esp3I CGTCTC 1 cut(s) 177
FalI AAGNNNNNCTT 6 cut(s) 693, 725, 1190, 1222, 1947, 1979
FaqI GGGAC 1 cut(s) 230
FauNDI CATATG 2 cut(s) 478, 1438
FblI GTMKAC 1 cut(s) 1303
Fnu4HI GCNGC 3 cut(s) 810, 915, 1833
FokI GGATG 6 cut(s) 17, 182, 545, 1115, 1505, 1553
Fsp4HI GCNGC 3 cut(s) 810, 915, 1833
FspBI CTAG 8 cut(s) 324, 330, 459, 1160, 1422, 1707, 1916, 1992
GlaI GCGC 2 cut(s) 1400, 2046
GluI GCNGC 3 cut(s) 810, 915, 1833
GsuI CTGGAG 2 cut(s) 159, 1515
HaeII RGCGCY 1 cut(s) 1402
HaeIII GGCC 2 cut(s) 826, 1718
HapII CCGG 1 cut(s) 1119
HgaI GACGC 1 cut(s) 159
HhaI GCGC 2 cut(s) 1401, 2047
Hin1I GRCGYC 1 cut(s) 170
Hin6I GCGC 2 cut(s) 1399, 2045
HinP1I GCGC 2 cut(s) 1399, 2045
HincII GTYRAC 2 cut(s) 873, 1629
HindII GTYRAC 2 cut(s) 873, 1629
HpaI GTTAAC 1 cut(s) 873
HpaII CCGG 1 cut(s) 1119
HphI GGTGA 4 cut(s) 938, 1108, 1202, 1465
Hpy166II GTNNAC 9 cut(s) 317, 456, 660, 726, 873, 886, 1193, 1304, 1629
Hpy188I TCNGA 7 cut(s) 46, 112, 732, 833, 1042, 1168, 1386
Hpy188III TCNNGA 4 cut(s) 176, 847, 1268, 1352
Hpy8I GTNNAC 9 cut(s) 317, 456, 660, 726, 873, 886, 1193, 1304, 1629
HpyAV CCTTC 9 cut(s) 107, 553, 628, 905, 1069, 1174, 1229, 1530, 1990
HpyCH4III ACNGT 4 cut(s) 244, 664, 837, 1132
HpyCH4IV ACGT 4 cut(s) 734, 758, 1263, 1777
HpyF10VI GCNNNNNNNGC 5 cut(s) 613, 770, 1156, 1601, 2025
HpySE526I ACGT 4 cut(s) 734, 758, 1263, 1777
Hsp92I GRCGYC 1 cut(s) 170
HspAI GCGC 2 cut(s) 1399, 2045
KspAI GTTAAC 1 cut(s) 873
LguI GCTCTTC 4 cut(s) 60, 75, 587, 1950
LmnI GCTCC 3 cut(s) 193, 769, 1534
Lsp1109I GCAGC 3 cut(s) 796, 901, 1844
LweI GCATC 5 cut(s) 523, 1072, 1483, 1582, 1909
MaeI CTAG 8 cut(s) 324, 330, 459, 1160, 1422, 1707, 1916, 1992
MaeII ACGT 4 cut(s) 734, 758, 1263, 1777
MflI RGATCY 2 cut(s) 544, 1239
MlsI TGGCCA 1 cut(s) 826
MluNI TGGCCA 1 cut(s) 826
MlyI GAGTC 4 cut(s) 350, 1465, 1492, 2003
MmeI TCCRAC 3 cut(s) 856, 1275, 1973
Mox20I TGGCCA 1 cut(s) 826
Mph1103I ATGCAT 3 cut(s) 538, 856, 1470
MscI TGGCCA 1 cut(s) 826
MseI TTAA 5 cut(s) 818, 872, 1197, 1403, 1511
MslI CAYNNNNRTG 1 cut(s) 1491
Msp20I TGGCCA 1 cut(s) 826
MspCI CTTAAG 1 cut(s) 1196
MspI CCGG 1 cut(s) 1119
MspR9I CCNGG 5 cut(s) 285, 903, 924, 1225, 1533
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 5 cut(s) 285, 903, 924, 1225, 1533
MwoI GCNNNNNNNGC 5 cut(s) 613, 770, 1156, 1601, 2025
NdeI CATATG 2 cut(s) 478, 1438
NheI GCTAGC 1 cut(s) 1159
NlaIV GGNNCC 1 cut(s) 546
NmeAIII GCCGAG 2 cut(s) 146, 1744
NmuCI GTSAC 2 cut(s) 1484, 1895
NsiI ATGCAT 3 cut(s) 538, 856, 1470
NspI RCATGY 1 cut(s) 1883
PaqCI CACCTGC 1 cut(s) 119
PciSI GCTCTTC 4 cut(s) 60, 75, 587, 1950
PctI GAATGC 1 cut(s) 856
PfeI GAWTC 6 cut(s) 107, 482, 493, 691, 1330, 1852
PfoI TCCNGGA 1 cut(s) 1531
PkrI GCNGC 3 cut(s) 811, 916, 1834
PleI GAGTC 4 cut(s) 349, 1464, 1491, 2003
PpsI GAGTC 4 cut(s) 349, 1464, 1491, 2003
Ppu21I YACGTR 1 cut(s) 1778
PsiI TTATAA 1 cut(s) 1904
Psp1406I AACGTT 1 cut(s) 758
Psp6I CCWGG 5 cut(s) 283, 901, 922, 1223, 1531
PspGI CCWGG 5 cut(s) 283, 901, 922, 1223, 1531
PspN4I GGNNCC 1 cut(s) 546
PstI CTGCAG 1 cut(s) 1152
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 544, 1239
RseI CAYNNNNRTG 1 cut(s) 1491
SapI GCTCTTC 4 cut(s) 60, 75, 587, 1950
SaqAI TTAA 5 cut(s) 818, 872, 1197, 1403, 1511
SatI GCNGC 3 cut(s) 810, 915, 1833
ScaI AGTACT 3 cut(s) 328, 1202, 1804
SchI GAGTC 4 cut(s) 350, 1465, 1492, 2003
ScrFI CCNGG 5 cut(s) 285, 903, 924, 1225, 1533
SfaNI GCATC 5 cut(s) 523, 1072, 1483, 1582, 1909
SfcI CTRYAG 3 cut(s) 639, 1148, 1308
SmiMI CAYNNNNRTG 1 cut(s) 1491
SmlI CTYRAG 3 cut(s) 1058, 1196, 1571
SmoI CTYRAG 3 cut(s) 1058, 1196, 1571
SpeI ACTAGT 2 cut(s) 323, 329
SspI AATATT 1 cut(s) 1612
SspMI CTAG 8 cut(s) 324, 330, 459, 1160, 1422, 1707, 1916, 1992
StyD4I CCNGG 5 cut(s) 283, 901, 922, 1223, 1531
TaaI ACNGT 4 cut(s) 244, 664, 837, 1132
TaiI ACGT 4 cut(s) 737, 761, 1266, 1780
TaqI TCGA 4 cut(s) 790, 840, 1372, 1797
TatI WGTACW 5 cut(s) 326, 885, 1200, 1802, 1858
TfiI GAWTC 6 cut(s) 107, 482, 493, 691, 1330, 1852
Tru1I TTAA 5 cut(s) 818, 872, 1197, 1403, 1511
Tru9I TTAA 5 cut(s) 818, 872, 1197, 1403, 1511
TscAI CASTG 2 cut(s) 693, 1449
TseFI GTSAC 2 cut(s) 1484, 1895
TseI GCWGC 3 cut(s) 809, 914, 1832
Tsp45I GTSAC 2 cut(s) 1484, 1895
TspDTI ATGAA 9 cut(s) 60, 420, 495, 768, 794, 851, 997, 1193, 1453
TspGWI ACGGA 1 cut(s) 1755
TspRI CASTG 2 cut(s) 693, 1449
Vha464I CTTAAG 1 cut(s) 1196
XapI RAATTY 2 cut(s) 67, 1506
XceI RCATGY 1 cut(s) 1883
XmiI GTMKAC 1 cut(s) 1303
XspI CTAG 8 cut(s) 324, 330, 459, 1160, 1422, 1707, 1916, 1992
ZrmI AGTACT 3 cut(s) 328, 1202, 1804
Zsp2I ATGCAT 3 cut(s) 538, 856, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.