beta-galactosidase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 59 - 96 | 1.3e-06 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 391 - 464 | 4.6e-18 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 497 - 568 | 9e-14 | GAG-pre-integrase domain |
| rve | PF00665 | 581 - 682 | 3.4e-11 | Integrase core domain |
| SH3_retrovirus | PF25597 | 760 - 817 | 1e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 1066 - 1308 | 2.9e-75 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 867 |
| AarI | CACCTGC | 1 cut(s) | 3517 |
| Acc16I | TGCGCA | 1 cut(s) | 1935 |
| Acc36I | ACCTGC | 4 cut(s) | 292, 3517, 4190, 4209 |
| AccB1I | GGYRCC | 2 cut(s) | 1590, 2911 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1616, 2633, 3582 |
| AccI | GTMKAC | 1 cut(s) | 3257 |
| AccII | CGCG | 1 cut(s) | 2869 |
| AccIII | TCCGGA | 4 cut(s) | 361, 2704, 2878, 4175 |
| AciI | CCGC | 4 cut(s) | 1597, 2867, 3941, 4406 |
| AcoI | YGGCCR | 5 cut(s) | 901, 2887, 2895, 2967, 3369 |
| AcsI | RAATTY | 8 cut(s) | 339, 526, 780, 1441, 1558, 2405, 3767, 4363 |
| AcuI | CTGAAG | 1 cut(s) | 4212 |
| AcvI | CACGTG | 1 cut(s) | 2606 |
| AfaI | GTAC | 9 cut(s) | 1347, 1511, 1741, 1921, 3199, 3296, 3393, 3511, 4468 |
| AflII | CTTAAG | 1 cut(s) | 1865 |
| AflIII | ACRYGT | 3 cut(s) | 1141, 2603, 3716 |
| AgeI | ACCGGT | 2 cut(s) | 266, 3291 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2031 |
| AhlI | ACTAGT | 1 cut(s) | 1712 |
| AjiI | CACGTC | 1 cut(s) | 1004 |
| AjnI | CCWGG | 6 cut(s) | 102, 648, 2796, 2830, 3499, 4129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3788, 3820 |
| AleI | CACNNNNGTG | 2 cut(s) | 1454, 4244 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2414, 2446 |
| Alw21I | GWGCWC | 3 cut(s) | 1406, 2600, 2712 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2921 |
| Ama87I | CYCGRG | 5 cut(s) | 1116, 2531, 2846, 3224, 4332 |
| Aor13HI | TCCGGA | 4 cut(s) | 361, 2704, 2878, 4175 |
| AoxI | GGCC | 9 cut(s) | 646, 901, 1545, 2887, 2895, 2967, 3369, 3422, 4329 |
| ApeKI | GCWGC | 9 cut(s) | 287, 422, 425, 755, 758, 928, 1028, 3407, 4427 |
| ApoI | RAATTY | 8 cut(s) | 339, 526, 780, 1441, 1558, 2405, 3767, 4363 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 644, 676 |
| AseI | ATTAAT | 2 cut(s) | 594, 4142 |
| AsiGI | ACCGGT | 2 cut(s) | 266, 3291 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3800 |
| AspLEI | GCGC | 2 cut(s) | 1936, 2809 |
| AsuC2I | CCSGG | 4 cut(s) | 2847, 2848, 3225, 3226 |
| AsuHPI | GGTGA | 8 cut(s) | 1468, 2072, 2407, 2638, 2709, 3114, 3476, 4063 |
| AsuII | TTCGAA | 1 cut(s) | 3275 |
| AvaI | CYCGRG | 5 cut(s) | 1116, 2531, 2846, 3224, 4332 |
| AvaII | GGWCC | 9 cut(s) | 293, 1778, 2636, 2733, 2743, 2794, 2828, 3289, 4221 |
| AxyI | CCTNAGG | 2 cut(s) | 1478, 3126 |
| BalI | TGGCCA | 3 cut(s) | 903, 2889, 3371 |
| BamHI | GGATCC | 1 cut(s) | 98 |
| BanI | GGYRCC | 2 cut(s) | 1590, 2911 |
| BanII | GRGCYC | 3 cut(s) | 2335, 2600, 2712 |
| BauI | CACGAG | 3 cut(s) | 453, 2265, 3822 |
| BbrPI | CACGTG | 1 cut(s) | 2606 |
| BbsI | GAAGAC | 3 cut(s) | 539, 2171, 3239 |
| Bbv12I | GWGCWC | 3 cut(s) | 1406, 2600, 2712 |
| BbvI | GCAGC | 9 cut(s) | 274, 409, 412, 742, 745, 915, 1015, 3394, 4414 |
| BceAI | ACGGC | 1 cut(s) | 333 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3161, 3195 |
| BciT130I | CCWGG | 6 cut(s) | 104, 650, 2798, 2832, 3501, 4131 |
| BciVI | GTATCC | 4 cut(s) | 307, 1387, 3223, 4172 |
| BcnI | CCSGG | 4 cut(s) | 2847, 2848, 3225, 3226 |
| BcuI | ACTAGT | 1 cut(s) | 1712 |
| BfmI | CTRYAG | 2 cut(s) | 1060, 2922 |
| BfrI | CTTAAG | 1 cut(s) | 1865 |
| BfuAI | ACCTGC | 4 cut(s) | 292, 3517, 4190, 4209 |
| BfuI | GTATCC | 4 cut(s) | 307, 1387, 3223, 4172 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4196 |
| BmcAI | AGTACT | 1 cut(s) | 1741 |
| Bme18I | GGWCC | 9 cut(s) | 293, 1778, 2636, 2733, 2743, 2794, 2828, 3289, 4221 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2031 |
| BmeT110I | CYCGRG | 5 cut(s) | 1116, 2531, 2846, 3224, 4332 |
| BmgBI | CACGTC | 1 cut(s) | 1004 |
| BmiI | GGNNCC | 9 cut(s) | 100, 1536, 1592, 1779, 2638, 2692, 2734, 2795, 2913 |
| BmrI | ACTGGG | 1 cut(s) | 4204 |
| BmuI | ACTGGG | 1 cut(s) | 4204 |
| BpiI | GAAGAC | 3 cut(s) | 539, 2171, 3239 |
| BpmI | CTGGAG | 4 cut(s) | 132, 154, 1008, 4113 |
| Bpu10I | CCTNAGC | 3 cut(s) | 924, 2046, 2810 |
| Bpu14I | TTCGAA | 1 cut(s) | 3275 |
| BpuEI | CTTGAG | 2 cut(s) | 2234, 3206 |
| BpuMI | CCSGG | 4 cut(s) | 2847, 2848, 3225, 3226 |
| Bsa29I | ATCGAT | 2 cut(s) | 1567, 3934 |
| BsaAI | YACGTR | 3 cut(s) | 2606, 3201, 4266 |
| BsaI | GGTCTC | 5 cut(s) | 1467, 2106, 2138, 2367, 3109 |
| BsaWI | WCCGGW | 7 cut(s) | 266, 361, 2704, 2878, 3291, 4024, 4175 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1959, 1989, 2133, 2163, 2964, 2994 |
| Bse118I | RCCGGY | 5 cut(s) | 266, 290, 1593, 2897, 3291 |
| Bse21I | CCTNAGG | 2 cut(s) | 1478, 3126 |
| Bse3DI | GCAATG | 2 cut(s) | 3141, 3168 |
| BseAI | TCCGGA | 4 cut(s) | 361, 2704, 2878, 4175 |
| BseBI | CCWGG | 6 cut(s) | 104, 650, 2798, 2832, 3501, 4131 |
| BseCI | ATCGAT | 2 cut(s) | 1567, 3934 |
| BseGI | GGATG | 9 cut(s) | 1235, 1316, 1606, 2329, 2389, 3136, 3148, 3159, 3184 |
| BseMI | GCAATG | 2 cut(s) | 3141, 3168 |
| BseMII | CTCAG | 8 cut(s) | 776, 830, 854, 863, 1469, 2037, 2824, 3341 |
| BseRI | GAGGAG | 3 cut(s) | 981, 3097, 3746 |
| BseX3I | CGGCCG | 1 cut(s) | 2967 |
| BseXI | GCAGC | 9 cut(s) | 274, 409, 412, 742, 745, 915, 1015, 3394, 4414 |
| BseYI | CCCAGC | 2 cut(s) | 2661, 2694 |
| BsgI | GTGCAG | 1 cut(s) | 4326 |
| Bsh1236I | CGCG | 1 cut(s) | 2869 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2970 |
| BshFI | GGCC | 9 cut(s) | 648, 903, 1547, 2889, 2897, 2969, 3371, 3424, 4331 |
| BshNI | GGYRCC | 2 cut(s) | 1590, 2911 |
| BshTI | ACCGGT | 2 cut(s) | 266, 3291 |
| BshVI | ATCGAT | 2 cut(s) | 1567, 3934 |
| BsiEI | CGRYCG | 1 cut(s) | 2970 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1406, 2600, 2712 |
| BsiHKCI | CYCGRG | 5 cut(s) | 1116, 2531, 2846, 3224, 4332 |
| BsiWI | CGTACG | 1 cut(s) | 4466 |
| BslFI | GGGAC | 9 cut(s) | 1086, 2192, 2530, 2622, 2771, 2807, 2933, 3069, 3556 |
| BsmBI | CGTCTC | 2 cut(s) | 110, 3347 |
| BsmFI | GGGAC | 9 cut(s) | 1086, 2192, 2530, 2622, 2771, 2807, 2933, 3069, 3556 |
| BsmI | GAATGC | 3 cut(s) | 1812, 1901, 3452 |
| BsnI | GGCC | 9 cut(s) | 648, 903, 1547, 2889, 2897, 2969, 3371, 3424, 4331 |
| Bso31I | GGTCTC | 5 cut(s) | 1467, 2106, 2138, 2367, 3109 |
| BsoBI | CYCGRG | 5 cut(s) | 1116, 2531, 2846, 3224, 4332 |
| Bsp119I | TTCGAA | 1 cut(s) | 3275 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1406, 2335, 2600, 2712 |
| Bsp13I | TCCGGA | 4 cut(s) | 361, 2704, 2878, 4175 |
| Bsp19I | CCATGG | 2 cut(s) | 2008, 2418 |
| BspACI | CCGC | 4 cut(s) | 1597, 2867, 3941, 4406 |
| BspANI | GGCC | 9 cut(s) | 648, 903, 1547, 2889, 2897, 2969, 3371, 3424, 4331 |
| BspCNI | CTCAG | 8 cut(s) | 775, 829, 853, 862, 1470, 2038, 2823, 3340 |
| BspDI | ATCGAT | 2 cut(s) | 1567, 3934 |
| BspEI | TCCGGA | 4 cut(s) | 361, 2704, 2878, 4175 |
| BspFNI | CGCG | 1 cut(s) | 2869 |
| BspHI | TCATGA | 3 cut(s) | 222, 460, 3606 |
| BspLI | GGNNCC | 9 cut(s) | 100, 1536, 1592, 1779, 2638, 2692, 2734, 2795, 2913 |
| BspMAI | CTGCAG | 1 cut(s) | 2926 |
| BspMI | ACCTGC | 4 cut(s) | 292, 3517, 4190, 4209 |
| BspQI | GCTCTTC | 1 cut(s) | 4265 |
| BspT104I | TTCGAA | 1 cut(s) | 3275 |
| BspT107I | GGYRCC | 2 cut(s) | 1590, 2911 |
| BspTI | CTTAAG | 1 cut(s) | 1865 |
| BspTNI | GGTCTC | 5 cut(s) | 1467, 2106, 2138, 2367, 3109 |
| BsrDI | GCAATG | 2 cut(s) | 3141, 3168 |
| BsrFI | RCCGGY | 5 cut(s) | 266, 290, 1593, 2897, 3291 |
| BssAI | RCCGGY | 5 cut(s) | 266, 290, 1593, 2897, 3291 |
| BssNAI | GTATAC | 1 cut(s) | 3258 |
| BssSI | CACGAG | 3 cut(s) | 453, 2265, 3822 |
| BssT1I | CCWWGG | 3 cut(s) | 1452, 2008, 2418 |
| Bst1107I | GTATAC | 1 cut(s) | 3258 |
| Bst2BI | CACGAG | 3 cut(s) | 453, 2265, 3822 |
| Bst2UI | CCWGG | 6 cut(s) | 104, 650, 2798, 2832, 3501, 4131 |
| Bst4CI | ACNGT | 9 cut(s) | 1491, 2149, 3083, 3238, 3262, 3570, 3899, 3999, 4160 |
| Bst6I | CTCTTC | 6 cut(s) | 730, 2109, 2901, 3094, 3471, 4265 |
| BstAFI | CTTAAG | 1 cut(s) | 1865 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 284, 800, 888, 1336 |
| BstBAI | YACGTR | 3 cut(s) | 2606, 3201, 4266 |
| BstBI | TTCGAA | 1 cut(s) | 3275 |
| BstC8I | GCNNGC | 6 cut(s) | 646, 717, 1673, 2899, 3159, 3876 |
| BstDSI | CCRYGG | 3 cut(s) | 833, 2008, 2418 |
| BstF5I | GGATG | 9 cut(s) | 1235, 1316, 1606, 2329, 2389, 3136, 3148, 3159, 3184 |
| BstFNI | CGCG | 1 cut(s) | 2869 |
| BstHHI | GCGC | 2 cut(s) | 1936, 2809 |
| BstMCI | CGRYCG | 1 cut(s) | 2970 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 284, 800, 888, 1336, 1898, 2975, 3368, 4196 |
| BstNI | CCWGG | 6 cut(s) | 104, 650, 2798, 2832, 3501, 4131 |
| BstNSI | RCATGY | 5 cut(s) | 1145, 1510, 1940, 2125, 3720 |
| BstSFI | CTRYAG | 2 cut(s) | 1060, 2922 |
| BstUI | CGCG | 1 cut(s) | 2869 |
| BstV1I | GCAGC | 9 cut(s) | 274, 409, 412, 742, 745, 915, 1015, 3394, 4414 |
| BstV2I | GAAGAC | 3 cut(s) | 539, 2171, 3239 |
| BstX2I | RGATCY | 5 cut(s) | 98, 228, 845, 1078, 2875 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 110, 2009 |
| BstYI | RGATCY | 5 cut(s) | 98, 228, 845, 1078, 2875 |
| BstZ17I | GTATAC | 1 cut(s) | 3258 |
| BstZI | CGGCCG | 1 cut(s) | 2967 |
| Bsu15I | ATCGAT | 2 cut(s) | 1567, 3934 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1478, 3126 |
| BsuI | GTATCC | 4 cut(s) | 307, 1387, 3223, 4172 |
| BsuRI | GGCC | 9 cut(s) | 648, 903, 1547, 2889, 2897, 2969, 3371, 3424, 4331 |
| BsuTUI | ATCGAT | 2 cut(s) | 1567, 3934 |
| BtgI | CCRYGG | 3 cut(s) | 833, 2008, 2418 |
| BtrI | CACGTC | 1 cut(s) | 1004 |
| BtsCI | GGATG | 9 cut(s) | 1235, 1316, 1606, 2329, 2389, 3136, 3148, 3159, 3184 |
| BtsI | GCAGTG | 1 cut(s) | 2985 |
| BtsIMutI | CAGTG | 4 cut(s) | 78, 2627, 2985, 3372 |
| BveI | ACCTGC | 4 cut(s) | 292, 3517, 4190, 4209 |
| Cac8I | GCNNGC | 6 cut(s) | 646, 717, 1673, 2899, 3159, 3876 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2921 |
| CciI | TCATGA | 3 cut(s) | 222, 460, 3606 |
| CfoI | GCGC | 2 cut(s) | 1936, 2809 |
| Cfr10I | RCCGGY | 5 cut(s) | 266, 290, 1593, 2897, 3291 |
| Cfr9I | CCCGGG | 2 cut(s) | 2846, 3224 |
| ClaI | ATCGAT | 2 cut(s) | 1567, 3934 |
| CseI | GACGC | 3 cut(s) | 677, 1179, 1263 |
| CsiI | ACCWGGT | 1 cut(s) | 2830 |
| Csp6I | GTAC | 9 cut(s) | 1346, 1510, 1740, 1920, 3198, 3295, 3392, 3510, 4467 |
| CspAI | ACCGGT | 2 cut(s) | 266, 3291 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 690, 725 |
| CviQI | GTAC | 9 cut(s) | 1346, 1510, 1740, 1920, 3198, 3295, 3392, 3510, 4467 |
| DraI | TTTAAA | 1 cut(s) | 4119 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2031 |
| EaeI | YGGCCR | 5 cut(s) | 901, 2887, 2895, 2967, 3369 |
| EagI | CGGCCG | 1 cut(s) | 2967 |
| Eam1104I | CTCTTC | 6 cut(s) | 730, 2109, 2901, 3094, 3471, 4265 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2031 |
| EarI | CTCTTC | 6 cut(s) | 730, 2109, 2901, 3094, 3471, 4265 |
| Ecl136II | GAGCTC | 2 cut(s) | 2598, 2710 |
| EclXI | CGGCCG | 1 cut(s) | 2967 |
| Eco130I | CCWWGG | 3 cut(s) | 1452, 2008, 2418 |
| Eco24I | GRGCYC | 3 cut(s) | 2335, 2600, 2712 |
| Eco31I | GGTCTC | 5 cut(s) | 1467, 2106, 2138, 2367, 3109 |
| Eco47I | GGWCC | 9 cut(s) | 293, 1778, 2636, 2733, 2743, 2794, 2828, 3289, 4221 |
| Eco52I | CGGCCG | 1 cut(s) | 2967 |
| Eco53kI | GAGCTC | 2 cut(s) | 2598, 2710 |
| Eco57I | CTGAAG | 1 cut(s) | 4212 |
| Eco72I | CACGTG | 1 cut(s) | 2606 |
| Eco81I | CCTNAGG | 2 cut(s) | 1478, 3126 |
| Eco88I | CYCGRG | 5 cut(s) | 1116, 2531, 2846, 3224, 4332 |
| EcoICRI | GAGCTC | 2 cut(s) | 2598, 2710 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1778, 2794 |
| EcoRI | GAATTC | 2 cut(s) | 339, 1558 |
| EcoRII | CCWGG | 6 cut(s) | 102, 648, 2796, 2830, 3499, 4129 |
| EcoT14I | CCWWGG | 3 cut(s) | 1452, 2008, 2418 |
| EcoT22I | ATGCAT | 2 cut(s) | 3454, 4068 |
| EcoT38I | GRGCYC | 3 cut(s) | 2335, 2600, 2712 |
| ErhI | CCWWGG | 3 cut(s) | 1452, 2008, 2418 |
| Esp3I | CGTCTC | 2 cut(s) | 110, 3347 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1205, 1237, 4494, 4526 |
| FaqI | GGGAC | 9 cut(s) | 1086, 2192, 2530, 2622, 2771, 2807, 2933, 3069, 3556 |
| FauNDI | CATATG | 3 cut(s) | 1200, 4086, 4476 |
| FblI | GTMKAC | 1 cut(s) | 3257 |
| FokI | GGATG | 9 cut(s) | 1222, 1303, 1593, 2336, 2376, 3143, 3155, 3166, 3191 |
| FriOI | GRGCYC | 3 cut(s) | 2335, 2600, 2712 |
| FspAI | RTGCGCAY | 1 cut(s) | 1935 |
| FspI | TGCGCA | 1 cut(s) | 1935 |
| GlaI | GCGC | 2 cut(s) | 1935, 2808 |
| GsaI | CCCAGC | 2 cut(s) | 2665, 2698 |
| GsuI | CTGGAG | 4 cut(s) | 132, 154, 1008, 4113 |
| HaeIII | GGCC | 9 cut(s) | 648, 903, 1547, 2889, 2897, 2969, 3371, 3424, 4331 |
| HgaI | GACGC | 3 cut(s) | 677, 1179, 1263 |
| HhaI | GCGC | 2 cut(s) | 1936, 2809 |
| Hin6I | GCGC | 2 cut(s) | 1934, 2807 |
| HinP1I | GCGC | 2 cut(s) | 1934, 2807 |
| HincII | GTYRAC | 1 cut(s) | 3902 |
| HindII | GTYRAC | 1 cut(s) | 3902 |
| HindIII | AAGCTT | 2 cut(s) | 477, 717 |
| HphI | GGTGA | 8 cut(s) | 1468, 2072, 2407, 2638, 2709, 3114, 3476, 4063 |
| Hpy166II | GTNNAC | 9 cut(s) | 939, 2036, 3079, 3258, 3289, 3343, 3597, 3902, 4224 |
| Hpy8I | GTNNAC | 9 cut(s) | 939, 2036, 3079, 3258, 3289, 3343, 3597, 3902, 4224 |
| HpyCH4III | ACNGT | 9 cut(s) | 1491, 2149, 3083, 3238, 3262, 3570, 3899, 3999, 4160 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 284, 800, 888, 1336, 1898, 2975, 3368, 4196 |
| HspAI | GCGC | 2 cut(s) | 1934, 2807 |
| Kpn2I | TCCGGA | 4 cut(s) | 361, 2704, 2878, 4175 |
| KroI | GCCGGC | 1 cut(s) | 2897 |
| KroNI | GCCGGC | 1 cut(s) | 2899 |
| LguI | GCTCTTC | 1 cut(s) | 4265 |
| LmnI | GCTCC | 4 cut(s) | 712, 2707, 2715, 4132 |
| Lsp1109I | GCAGC | 9 cut(s) | 274, 409, 412, 742, 745, 915, 1015, 3394, 4414 |
| MabI | ACCWGGT | 1 cut(s) | 2830 |
| MfeI | CAATTG | 2 cut(s) | 1382, 2891 |
| MflI | RGATCY | 5 cut(s) | 98, 228, 845, 1078, 2875 |
| MhlI | GDGCHC | 4 cut(s) | 1406, 2335, 2600, 2712 |
| MlsI | TGGCCA | 3 cut(s) | 903, 2889, 3371 |
| MluNI | TGGCCA | 3 cut(s) | 903, 2889, 3371 |
| MmeI | TCCRAC | 5 cut(s) | 690, 941, 2026, 2301, 3973 |
| Mox20I | TGGCCA | 3 cut(s) | 903, 2889, 3371 |
| Mph1103I | ATGCAT | 2 cut(s) | 3454, 4068 |
| MroI | TCCGGA | 4 cut(s) | 361, 2704, 2878, 4175 |
| MroNI | GCCGGC | 1 cut(s) | 2897 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3800 |
| MscI | TGGCCA | 3 cut(s) | 903, 2889, 3371 |
| MslI | CAYNNNNRTG | 8 cut(s) | 606, 1454, 1767, 3666, 3710, 4089, 4167, 4244 |
| Msp20I | TGGCCA | 3 cut(s) | 903, 2889, 3371 |
| MspCI | CTTAAG | 1 cut(s) | 1865 |
| MunI | CAATTG | 2 cut(s) | 1382, 2891 |
| Mva1269I | GAATGC | 3 cut(s) | 1812, 1901, 3452 |
| MvaI | CCWGG | 6 cut(s) | 104, 650, 2798, 2832, 3501, 4131 |
| MvnI | CGCG | 1 cut(s) | 2869 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 284, 800, 888, 1336, 1898, 2975, 3368, 4196 |
| NaeI | GCCGGC | 1 cut(s) | 2899 |
| NciI | CCSGG | 4 cut(s) | 2847, 2848, 3225, 3226 |
| NcoI | CCATGG | 2 cut(s) | 2008, 2418 |
| NdeI | CATATG | 3 cut(s) | 1200, 4086, 4476 |
| NgoMIV | GCCGGC | 1 cut(s) | 2897 |
| NlaIV | GGNNCC | 9 cut(s) | 100, 1536, 1592, 1779, 2638, 2692, 2734, 2795, 2913 |
| NmuCI | GTSAC | 8 cut(s) | 157, 2078, 2413, 2567, 2606, 3120, 3676, 3712 |
| NsbI | TGCGCA | 1 cut(s) | 1935 |
| NsiI | ATGCAT | 2 cut(s) | 3454, 4068 |
| NspI | RCATGY | 5 cut(s) | 1145, 1510, 1940, 2125, 3720 |
| NspV | TTCGAA | 1 cut(s) | 3275 |
| OliI | CACNNNNGTG | 2 cut(s) | 1454, 4244 |
| PaeR7I | CTCGAG | 2 cut(s) | 1116, 2531 |
| PagI | TCATGA | 3 cut(s) | 222, 460, 3606 |
| PaqCI | CACCTGC | 1 cut(s) | 3517 |
| PciI | ACATGT | 2 cut(s) | 1141, 3716 |
| PciSI | GCTCTTC | 1 cut(s) | 4265 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1000, 2074, 2866 |
| PctI | GAATGC | 3 cut(s) | 1812, 1901, 3452 |
| PdiI | GCCGGC | 1 cut(s) | 2899 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3800 |
| Pfl23II | CGTACG | 1 cut(s) | 4466 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1616, 2633, 3582 |
| PfoI | TCCNGGA | 1 cut(s) | 3499 |
| PinAI | ACCGGT | 2 cut(s) | 266, 3291 |
| PmaCI | CACGTG | 1 cut(s) | 2606 |
| PmlI | CACGTG | 1 cut(s) | 2606 |
| Ppu21I | YACGTR | 3 cut(s) | 2606, 3201, 4266 |
| PpuMI | RGGWCCY | 2 cut(s) | 1778, 2794 |
| PscI | ACATGT | 2 cut(s) | 1141, 3716 |
| PshBI | ATTAAT | 2 cut(s) | 594, 4142 |
| PsiI | TTATAA | 1 cut(s) | 867 |
| Psp124BI | GAGCTC | 2 cut(s) | 2600, 2712 |
| Psp5II | RGGWCCY | 2 cut(s) | 1778, 2794 |
| Psp6I | CCWGG | 6 cut(s) | 102, 648, 2796, 2830, 3499, 4129 |
| PspCI | CACGTG | 1 cut(s) | 2606 |
| PspFI | CCCAGC | 2 cut(s) | 2661, 2694 |
| PspGI | CCWGG | 6 cut(s) | 102, 648, 2796, 2830, 3499, 4129 |
| PspLI | CGTACG | 1 cut(s) | 4466 |
| PspN4I | GGNNCC | 9 cut(s) | 100, 1536, 1592, 1779, 2638, 2692, 2734, 2795, 2913 |
| PspPPI | RGGWCCY | 2 cut(s) | 1778, 2794 |
| PspXI | VCTCGAGB | 2 cut(s) | 1116, 2531 |
| PstI | CTGCAG | 1 cut(s) | 2926 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2921 |
| PsuI | RGATCY | 5 cut(s) | 98, 228, 845, 1078, 2875 |
| RsaI | GTAC | 9 cut(s) | 1347, 1511, 1741, 1921, 3199, 3296, 3393, 3511, 4468 |
| RsaNI | GTAC | 9 cut(s) | 1346, 1510, 1740, 1920, 3198, 3295, 3392, 3510, 4467 |
| RseI | CAYNNNNRTG | 8 cut(s) | 606, 1454, 1767, 3666, 3710, 4089, 4167, 4244 |
| SacI | GAGCTC | 2 cut(s) | 2600, 2712 |
| SapI | GCTCTTC | 1 cut(s) | 4265 |
| ScaI | AGTACT | 1 cut(s) | 1741 |
| SduI | GDGCHC | 4 cut(s) | 1406, 2335, 2600, 2712 |
| SexAI | ACCWGGT | 1 cut(s) | 2830 |
| SfcI | CTRYAG | 2 cut(s) | 1060, 2922 |
| Sfr274I | CTCGAG | 2 cut(s) | 1116, 2531 |
| SfuI | TTCGAA | 1 cut(s) | 3275 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1593 |
| SinI | GGWCC | 9 cut(s) | 293, 1778, 2636, 2733, 2743, 2794, 2828, 3289, 4221 |
| SlaI | CTCGAG | 2 cut(s) | 1116, 2531 |
| SmaI | CCCGGG | 2 cut(s) | 2848, 3226 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 606, 1454, 1767, 3666, 3710, 4089, 4167, 4244 |
| SmlI | CTYRAG | 5 cut(s) | 1116, 1865, 2213, 2531, 3185 |
| SmoI | CTYRAG | 5 cut(s) | 1116, 1865, 2213, 2531, 3185 |
| SpeI | ACTAGT | 1 cut(s) | 1712 |
| SsiI | CCGC | 4 cut(s) | 1597, 2867, 3941, 4406 |
| SspI | AATATT | 2 cut(s) | 3800, 4207 |
| SstI | GAGCTC | 2 cut(s) | 2600, 2712 |
| StyI | CCWWGG | 3 cut(s) | 1452, 2008, 2418 |
| TaaI | ACNGT | 9 cut(s) | 1491, 2149, 3083, 3238, 3262, 3570, 3899, 3999, 4160 |
| TaqII | GACCGA | 2 cut(s) | 2088, 3011 |
| TatI | WGTACW | 2 cut(s) | 1739, 1919 |
| TauI | GCSGC | 1 cut(s) | 4408 |
| TscAI | CASTG | 4 cut(s) | 85, 2634, 2985, 3372 |
| TseFI | GTSAC | 8 cut(s) | 157, 2078, 2413, 2567, 2606, 3120, 3676, 3712 |
| TseI | GCWGC | 9 cut(s) | 287, 422, 425, 755, 758, 928, 1028, 3407, 4427 |
| Tsp45I | GTSAC | 8 cut(s) | 157, 2078, 2413, 2567, 2606, 3120, 3676, 3712 |
| TspGWI | ACGGA | 7 cut(s) | 47, 176, 850, 2083, 2172, 2703, 2947 |
| TspMI | CCCGGG | 2 cut(s) | 2846, 3224 |
| TspRI | CASTG | 4 cut(s) | 85, 2634, 2985, 3372 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1616, 2633, 3582 |
| Vha464I | CTTAAG | 1 cut(s) | 1865 |
| VpaK11BI | GGWCC | 9 cut(s) | 293, 1778, 2636, 2733, 2743, 2794, 2828, 3289, 4221 |
| VspI | ATTAAT | 2 cut(s) | 594, 4142 |
| XapI | RAATTY | 8 cut(s) | 339, 526, 780, 1441, 1558, 2405, 3767, 4363 |
| XbaI | TCTAGA | 3 cut(s) | 2545, 3865, 4165 |
| XceI | RCATGY | 5 cut(s) | 1145, 1510, 1940, 2125, 3720 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1459, 3989 |
| XhoI | CTCGAG | 2 cut(s) | 1116, 2531 |
| XmaI | CCCGGG | 2 cut(s) | 2846, 3224 |
| XmiI | GTMKAC | 1 cut(s) | 3257 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3800 |
| ZrmI | AGTACT | 1 cut(s) | 1741 |
| Zsp2I | ATGCAT | 2 cut(s) | 3454, 4068 |