Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 43 - 158 | 2.1e-22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 508 |
| AccB1I | GGYRCC | 1 cut(s) | 508 |
| AciI | CCGC | 1 cut(s) | 160 |
| AclWI | GGATC | 1 cut(s) | 127 |
| AcsI | RAATTY | 1 cut(s) | 654 |
| AcuI | CTGAAG | 1 cut(s) | 680 |
| AfaI | GTAC | 5 cut(s) | 134, 350, 510, 665, 693 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 686 |
| AflII | CTTAAG | 1 cut(s) | 344 |
| AflIII | ACRYGT | 1 cut(s) | 230 |
| AgsI | TTSAA | 1 cut(s) | 670 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 772 |
| AjnI | CCWGG | 3 cut(s) | 371, 504, 679 |
| AluBI | AGCT | 5 cut(s) | 307, 343, 491, 524, 677 |
| AluI | AGCT | 5 cut(s) | 307, 343, 491, 524, 677 |
| Alw21I | GWGCWC | 1 cut(s) | 526 |
| Alw26I | GTCTC | 2 cut(s) | 295, 425 |
| AlwI | GGATC | 1 cut(s) | 127 |
| AoxI | GGCC | 1 cut(s) | 864 |
| ApoI | RAATTY | 1 cut(s) | 654 |
| Asp718I | GGTACC | 1 cut(s) | 508 |
| AsuHPI | GGTGA | 2 cut(s) | 350, 613 |
| AsuNHI | GCTAGC | 1 cut(s) | 307 |
| BanI | GGYRCC | 1 cut(s) | 508 |
| BanII | GRGCYC | 1 cut(s) | 526 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 155, 187 |
| Bbv12I | GWGCWC | 1 cut(s) | 526 |
| BbvCI | CCTCAGC | 1 cut(s) | 861 |
| BccI | CCATC | 2 cut(s) | 7, 110 |
| BciT130I | CCWGG | 3 cut(s) | 373, 506, 681 |
| BcoDI | GTCTC | 2 cut(s) | 295, 425 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BfmI | CTRYAG | 2 cut(s) | 75, 296 |
| BfrI | CTTAAG | 1 cut(s) | 344 |
| BmcAI | AGTACT | 3 cut(s) | 350, 665, 693 |
| Bme1390I | CCNGG | 3 cut(s) | 373, 506, 681 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 772 |
| BmiI | GGNNCC | 1 cut(s) | 510 |
| BmrFI | CCNGG | 3 cut(s) | 373, 506, 681 |
| BmsI | GCATC | 1 cut(s) | 631 |
| BmtI | GCTAGC | 1 cut(s) | 311 |
| BpmI | CTGGAG | 1 cut(s) | 663 |
| Bpu10I | CCTNAGC | 1 cut(s) | 861 |
| BpuEI | CTTGAG | 1 cut(s) | 740 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 686 |
| Bse1I | ACTGG | 2 cut(s) | 271, 855 |
| BseBI | CCWGG | 3 cut(s) | 373, 506, 681 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseGI | GGATG | 2 cut(s) | 256, 646 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 686 |
| BseMII | CTCAG | 3 cut(s) | 201, 306, 852 |
| BseNI | ACTGG | 2 cut(s) | 271, 855 |
| BshFI | GGCC | 1 cut(s) | 866 |
| BshNI | GGYRCC | 1 cut(s) | 508 |
| BsiHKAI | GWGCWC | 1 cut(s) | 526 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 686 |
| BsmAI | GTCTC | 2 cut(s) | 295, 425 |
| BsnI | GGCC | 1 cut(s) | 866 |
| Bsp1286I | GDGCHC | 1 cut(s) | 526 |
| Bsp143I | GATC | 3 cut(s) | 119, 190, 517 |
| BspACI | CCGC | 1 cut(s) | 160 |
| BspANI | GGCC | 1 cut(s) | 866 |
| BspCNI | CTCAG | 3 cut(s) | 200, 307, 853 |
| BspLI | GGNNCC | 1 cut(s) | 510 |
| BspMAI | CTGCAG | 1 cut(s) | 300 |
| BspOI | GCTAGC | 1 cut(s) | 311 |
| BspPI | GGATC | 1 cut(s) | 127 |
| BspT107I | GGYRCC | 1 cut(s) | 508 |
| BspTI | CTTAAG | 1 cut(s) | 344 |
| BsrI | ACTGG | 2 cut(s) | 271, 855 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 3 cut(s) | 119, 190, 517 |
| Bst2UI | CCWGG | 3 cut(s) | 373, 506, 681 |
| Bst4CI | ACNGT | 3 cut(s) | 100, 153, 280 |
| Bst6I | CTCTTC | 2 cut(s) | 3, 818 |
| BstAFI | CTTAAG | 1 cut(s) | 344 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 2 cut(s) | 309, 526 |
| BstDEI | CTNAG | 4 cut(s) | 187, 315, 355, 861 |
| BstF5I | GGATG | 2 cut(s) | 256, 646 |
| BstKTI | GATC | 3 cut(s) | 122, 193, 520 |
| BstMAI | GTCTC | 2 cut(s) | 295, 425 |
| BstMBI | GATC | 3 cut(s) | 119, 190, 517 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 49, 304, 749 |
| BstNI | CCWGG | 3 cut(s) | 373, 506, 681 |
| BstNSI | RCATGY | 1 cut(s) | 234 |
| BstSCI | CCNGG | 3 cut(s) | 371, 504, 679 |
| BstSFI | CTRYAG | 2 cut(s) | 75, 296 |
| BsuRI | GGCC | 1 cut(s) | 866 |
| BtsCI | GGATG | 2 cut(s) | 256, 646 |
| BtsI | GCAGTG | 1 cut(s) | 597 |
| BtsIMutI | CAGTG | 4 cut(s) | 129, 264, 597, 862 |
| Cac8I | GCNNGC | 2 cut(s) | 309, 526 |
| CseI | GACGC | 1 cut(s) | 555 |
| CsiI | ACCWGGT | 1 cut(s) | 504 |
| Csp6I | GTAC | 5 cut(s) | 133, 349, 509, 664, 692 |
| CviAII | CATG | 6 cut(s) | 157, 231, 613, 637, 819, 887 |
| CviQI | GTAC | 5 cut(s) | 133, 349, 509, 664, 692 |
| DdeI | CTNAG | 4 cut(s) | 187, 315, 355, 861 |
| DpnI | GATC | 3 cut(s) | 121, 192, 519 |
| DpnII | GATC | 3 cut(s) | 119, 190, 517 |
| DriI | GACNNNNNGTC | 1 cut(s) | 772 |
| Eam1104I | CTCTTC | 2 cut(s) | 3, 818 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 772 |
| EarI | CTCTTC | 2 cut(s) | 3, 818 |
| Ecl136II | GAGCTC | 1 cut(s) | 524 |
| Eco24I | GRGCYC | 1 cut(s) | 526 |
| Eco53kI | GAGCTC | 1 cut(s) | 524 |
| Eco57I | CTGAAG | 1 cut(s) | 680 |
| EcoICRI | GAGCTC | 1 cut(s) | 524 |
| EcoRI | GAATTC | 1 cut(s) | 654 |
| EcoRII | CCWGG | 3 cut(s) | 371, 504, 679 |
| EcoT22I | ATGCAT | 1 cut(s) | 618 |
| EcoT38I | GRGCYC | 1 cut(s) | 526 |
| FaeI | CATG | 6 cut(s) | 160, 234, 616, 640, 822, 890 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 338, 370 |
| FatI | CATG | 6 cut(s) | 156, 230, 612, 636, 818, 886 |
| FauNDI | CATATG | 2 cut(s) | 586, 739 |
| FokI | GGATG | 2 cut(s) | 263, 653 |
| FriOI | GRGCYC | 1 cut(s) | 526 |
| FspBI | CTAG | 1 cut(s) | 308 |
| GsuI | CTGGAG | 1 cut(s) | 663 |
| HaeIII | GGCC | 1 cut(s) | 866 |
| HgaI | GACGC | 1 cut(s) | 555 |
| Hin1II | CATG | 6 cut(s) | 160, 234, 616, 640, 822, 890 |
| HincII | GTYRAC | 1 cut(s) | 777 |
| HindII | GTYRAC | 1 cut(s) | 777 |
| HinfI | GANTC | 2 cut(s) | 604, 631 |
| HphI | GGTGA | 2 cut(s) | 350, 613 |
| Hpy166II | GTNNAC | 2 cut(s) | 96, 777 |
| Hpy188I | TCNGA | 4 cut(s) | 190, 316, 534, 660 |
| Hpy188III | TCNNGA | 3 cut(s) | 416, 500, 719 |
| Hpy8I | GTNNAC | 2 cut(s) | 96, 777 |
| HpyAV | CCTTC | 5 cut(s) | 64, 157, 217, 678, 765 |
| HpyCH4III | ACNGT | 3 cut(s) | 100, 153, 280 |
| HpyCH4IV | ACGT | 2 cut(s) | 579, 850 |
| HpyCH4V | TGCA | 7 cut(s) | 25, 298, 450, 584, 590, 616, 743 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 49, 304, 749 |
| HpyF3I | CTNAG | 4 cut(s) | 187, 315, 355, 861 |
| HpySE526I | ACGT | 2 cut(s) | 579, 850 |
| Hsp92II | CATG | 6 cut(s) | 160, 234, 616, 640, 822, 890 |
| KpnI | GGTACC | 1 cut(s) | 512 |
| Kzo9I | GATC | 3 cut(s) | 119, 190, 517 |
| LmnI | GCTCC | 1 cut(s) | 682 |
| LweI | GCATC | 1 cut(s) | 631 |
| MabI | ACCWGGT | 1 cut(s) | 504 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MaeII | ACGT | 2 cut(s) | 579, 850 |
| MaeIII | GTNAC | 5 cut(s) | 170, 226, 632, 785, 814 |
| MalI | GATC | 3 cut(s) | 121, 192, 519 |
| MboI | GATC | 3 cut(s) | 119, 190, 517 |
| MboII | GAAGA | 3 cut(s) | 20, 395, 835 |
| MhlI | GDGCHC | 1 cut(s) | 526 |
| MluCI | AATT | 5 cut(s) | 127, 237, 360, 654, 808 |
| MlyI | GAGTC | 2 cut(s) | 613, 640 |
| MmeI | TCCRAC | 2 cut(s) | 423, 523 |
| Mph1103I | ATGCAT | 1 cut(s) | 618 |
| MseI | TTAA | 2 cut(s) | 327, 345 |
| MslI | CAYNNNNRTG | 1 cut(s) | 639 |
| MspCI | CTTAAG | 1 cut(s) | 344 |
| MspR9I | CCNGG | 3 cut(s) | 373, 506, 681 |
| MvaI | CCWGG | 3 cut(s) | 373, 506, 681 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 49, 304, 749 |
| NdeI | CATATG | 2 cut(s) | 586, 739 |
| NdeII | GATC | 3 cut(s) | 119, 190, 517 |
| NheI | GCTAGC | 1 cut(s) | 307 |
| NlaIII | CATG | 6 cut(s) | 160, 234, 616, 640, 822, 890 |
| NlaIV | GGNNCC | 1 cut(s) | 510 |
| NmeAIII | GCCGAG | 1 cut(s) | 892 |
| NmuCI | GTSAC | 1 cut(s) | 632 |
| NsiI | ATGCAT | 1 cut(s) | 618 |
| NspI | RCATGY | 1 cut(s) | 234 |
| PciI | ACATGT | 1 cut(s) | 230 |
| PfoI | TCCNGGA | 1 cut(s) | 679 |
| PleI | GAGTC | 2 cut(s) | 612, 639 |
| PpsI | GAGTC | 2 cut(s) | 612, 639 |
| PscI | ACATGT | 1 cut(s) | 230 |
| Psp124BI | GAGCTC | 1 cut(s) | 526 |
| Psp6I | CCWGG | 3 cut(s) | 371, 504, 679 |
| PspGI | CCWGG | 3 cut(s) | 371, 504, 679 |
| PspN4I | GGNNCC | 1 cut(s) | 510 |
| PstI | CTGCAG | 1 cut(s) | 300 |
| RsaI | GTAC | 5 cut(s) | 134, 350, 510, 665, 693 |
| RsaNI | GTAC | 5 cut(s) | 133, 349, 509, 664, 692 |
| RseI | CAYNNNNRTG | 1 cut(s) | 639 |
| SacI | GAGCTC | 1 cut(s) | 526 |
| SaqAI | TTAA | 2 cut(s) | 327, 345 |
| Sau3AI | GATC | 3 cut(s) | 119, 190, 517 |
| ScaI | AGTACT | 3 cut(s) | 350, 665, 693 |
| SchI | GAGTC | 2 cut(s) | 613, 640 |
| ScrFI | CCNGG | 3 cut(s) | 373, 506, 681 |
| SduI | GDGCHC | 1 cut(s) | 526 |
| SexAI | ACCWGGT | 1 cut(s) | 504 |
| SfaNI | GCATC | 1 cut(s) | 631 |
| SfcI | CTRYAG | 2 cut(s) | 75, 296 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 639 |
| SmlI | CTYRAG | 2 cut(s) | 344, 719 |
| SmoI | CTYRAG | 2 cut(s) | 344, 719 |
| Sse9I | AATT | 5 cut(s) | 127, 237, 360, 654, 808 |
| SsiI | CCGC | 1 cut(s) | 160 |
| SspMI | CTAG | 1 cut(s) | 308 |
| SstI | GAGCTC | 1 cut(s) | 526 |
| StyD4I | CCNGG | 3 cut(s) | 371, 504, 679 |
| TaaI | ACNGT | 3 cut(s) | 100, 153, 280 |
| TaiI | ACGT | 2 cut(s) | 582, 853 |
| TaqI | TCGA | 1 cut(s) | 520 |
| TasI | AATT | 5 cut(s) | 127, 237, 360, 654, 808 |
| TatI | WGTACW | 3 cut(s) | 348, 663, 691 |
| Tru1I | TTAA | 2 cut(s) | 327, 345 |
| Tru9I | TTAA | 2 cut(s) | 327, 345 |
| TscAI | CASTG | 4 cut(s) | 129, 271, 597, 862 |
| TseFI | GTSAC | 1 cut(s) | 632 |
| Tsp45I | GTSAC | 1 cut(s) | 632 |
| TspDTI | ATGAA | 2 cut(s) | 145, 601 |
| TspGWI | ACGGA | 1 cut(s) | 612 |
| TspRI | CASTG | 4 cut(s) | 129, 271, 597, 862 |
| Vha464I | CTTAAG | 1 cut(s) | 344 |
| XapI | RAATTY | 1 cut(s) | 654 |
| XceI | RCATGY | 1 cut(s) | 234 |
| XspI | CTAG | 1 cut(s) | 308 |
| ZrmI | AGTACT | 3 cut(s) | 350, 665, 693 |
| Zsp2I | ATGCAT | 1 cut(s) | 618 |