MD09G1226900.v1.1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000071
Physical Location & Seq
Reverse (-)
28064096 .. 28066186
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1226900.v1.1.491

Sequence Viewer

Length: 2091 bp
ATGTGTTTCCTTTTCTTCTTCCTCACCATTCCGCTGCATCACCACATCCCCATATTACCCACATTCCCAACATTTCCTCATCTCACCCTGACCCATTTTTACCCTCTGATTTGGACTCTCTTTCCGCACCCCCTGCCTCCACCTCCCGTTGGGCCTACTCCGACACCCGGCCCACCTCACCCCACATCCCTTAACCCACTTCCTGCAGAACCCACACCTGTCGAACTCACACCTCTGCTTTCTCCTTCTCCGCTCCCCGCTCACTCTCCACCGACACCTCTCATTTCCCCACCACCGTCCCTCCCGCCTACCAGCCCCGCTCCGCGCCGCAGCGGTCGTTCCACCCGACCGCCTGCCTATTTGCAAGACTTTCATCTCGAGACTAGCCTCCCTTCCCGGACCACCTCATCATCGTCTTCGAACCAGGTCACCCGTTCAGGTACGGCTCACCCGATCTCTCAGTTTTTGTCTTATGCTCACCTTTCTCACCCTCACAAAACATATCTTGCTCAACTTACTCTTCGTAAAGAACCCACCAGTTTCTCTCAGGCAGTCCAAATCCCACACTGGCGTGATGCCATGAAAACTGAAATTGCTGCTTTACAAGCTAATGGGACTTGGAGCTTGGTGCCGTTGCCTCCTCATAAGCGGCCGATCGGTTGTAAGTGGGTGTATAAGGTGAAATTGAAGGCTGATGGTACAGTTGAACGCTACAAAGCCCGCTTAGTGGCCAAGGGCTACAGTCAGGTTGAAGGCGTCGATTACCGGGAAACCTTTGCCCCCGTTGCAAAAATGGTGACAGTTCGTGTTCTTCTTAGTGTGGCCTCTCTGCGTGGCTGGCATCTCCATCAGTTGGATGTGAACAATGCGTTTCTAAATGGTGACCTTGATGAAGAGGTCTTCATGTCTTTGCCTCCTGGTTTCGGACGAAAGGGGGAGCATCGGGTCTGCCAATTGCATAAGTCATTGTACGGGTTAAAACAGGCATCTAGGCAGTGGTTTATCAAGCTGTCCACTGCCCTCAAGGCCGCGGGATTCCAACAGTCACGATCTGACTATTCTCTCTTCGTCCGACGTCGTCAAGATAACTTCCTAGTGTTGCTTGTATATGTTGATGATGTTATACTGGCAGGGAACAATTTGGAAGATATAGAAAACACAAAGTTGTTCTTGGCTAACCGATTCAAACTCAAGGATTTGGGGCAGTTGAAATATTTCCTTGGCATCGAAGTTGCCAGGTCACGACATGGAATTAGCTTGTCACAACGAAAGTATACTTTGGAAATCTTGGATGATGCAGGATTTTTGGGTGTCAAACCTTCTCGATTCCCTGTGGAACCGAATTTATCACTTACACAGCTCGATGGAAAGCTGTTAGATGATGCTTCGGTATACAGAAGAATGGTTGGGAGACTAATATATTTGACCATAACTAGGCCAGACTTGACTTATGCTGTACATGTATTGAGCCAGTTCATGGACAAACCACGACAACCGCATCTGGAGGCAGCCCACAAAGTGCTTAAATATATTAAGCGAACACCGGGTCAAGGCATCCTACGGCCATCTACAGGGTCGCTACAATTGCGGGCATTCTGTGATGCCGATTGGGCACGTTGTAAGGATACAAGAAGATCGATCACGGGATACTGCATCTTACTTGGGCAAGCACCGGTCTCTTGGAAGACTAAGAAACAGACAACGGTATCACGTTTGAGTGCGGAAGCCGAGTATCGATCCATGGCTACCACTTGCTGTGAAGTTACATGGTTGAAAAACATTTTGAAGGATTTGGGAGTTGATCACACGCAGCCAGTAGCTTTGTTTTGTGACAATCAGGCGGCTATACACATAGCATCGAATCCGGTGTTTCATGAGAGAACCAAACACATAGAGATAGATTGCCATCTGGTTCGAGAAAAGGTACAAGAAGGGATGATTCGGACAACTCACATTCGAACCACAAATCAGCCAGCAGATTTGTTCACTAAACCATTAAGCTCGACACAATTTGAAGTGCTACTTAGCAAGTTGGGTGTCGTAAACATACACTCCAACTTGAGGGGGAGTGTTGAAGAAGATCGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

697

Amino Acids

78.26

Weight (kDa)

9.63

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 204 - 446 2.4e-75 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1078
AccB1I GGYRCC 1 cut(s) 628
AccB7I CCANNNNNTGG 2 cut(s) 853, 1477
AccBSI CCGCTC 3 cut(s) 253, 260, 320
AccI GTMKAC 2 cut(s) 1274, 1392
AccII CGCG 2 cut(s) 325, 1031
AclWI GGATC 1 cut(s) 1731
AcoI YGGCCR 3 cut(s) 650, 729, 1562
AcsI RAATTY 1 cut(s) 1342
AcyI GRCGYC 2 cut(s) 756, 1075
AdeI CACNNNGTG 1 cut(s) 1519
AfaI GTAC 5 cut(s) 442, 700, 971, 1458, 1926
AflIII ACRYGT 1 cut(s) 1459
AgeI ACCGGT 1 cut(s) 1672
AgsI TTSAA 9 cut(s) 688, 707, 752, 1186, 1210, 1774, 1786, 2015, 2075
AjnI CCWGG 3 cut(s) 423, 916, 1235
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 9 cut(s) 608, 624, 1009, 1257, 1360, 1372, 1820, 2001, 2087
AluI AGCT 9 cut(s) 608, 624, 1009, 1257, 1360, 1372, 1820, 2001, 2087
Alw26I GTCTC 3 cut(s) 374, 1405, 1681
AlwI GGATC 1 cut(s) 1731
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 8 cut(s) 152, 169, 650, 729, 822, 1026, 1436, 1562
ApeKI GCWGC 5 cut(s) 34, 330, 596, 1508, 1810
ApoI RAATTY 1 cut(s) 1342
ArsI GACNNNNNNTTYG 2 cut(s) 1531, 1563
AsiGI ACCGGT 1 cut(s) 1672
Asp700I GAANNNNTTC 1 cut(s) 1214
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 152, 170, 399
AsuC2I CCSGG 4 cut(s) 168, 397, 767, 1545
AsuII TTCGAA 2 cut(s) 419, 1957
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 1615
BaeI ACNNNNGTAYC 2 cut(s) 1689, 1722
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 1 cut(s) 628
BbsI GAAGAC 3 cut(s) 408, 892, 1691
BbvI GCAGC 5 cut(s) 21, 342, 583, 1520, 1822
BccI CCATC 5 cut(s) 689, 855, 1358, 1573, 1914
BceAI ACGGC 3 cut(s) 459, 616, 1577
BciT130I CCWGG 3 cut(s) 425, 918, 1237
BciVI GTATCC 2 cut(s) 1618, 1640
BclI TGATCA 1 cut(s) 1801
BcnI CCSGG 4 cut(s) 168, 397, 767, 1545
BcoDI GTCTC 3 cut(s) 374, 1405, 1681
BfaI CTAG 4 cut(s) 384, 990, 1094, 1434
BfmI CTRYAG 3 cut(s) 204, 739, 1569
BfuI GTATCC 2 cut(s) 1618, 1640
BglI GCCNNNNNGGC 2 cut(s) 1025, 1610
BisI GCNGC 9 cut(s) 35, 328, 331, 597, 650, 1029, 1509, 1811, 1842
BlsI GCNGC 9 cut(s) 36, 329, 332, 598, 651, 1030, 1510, 1812, 1843
Bme1390I CCNGG 7 cut(s) 168, 397, 425, 767, 918, 1237, 1545
Bme18I GGWCC 1 cut(s) 399
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 152, 170, 399
BmiI GGNNCC 2 cut(s) 630, 1338
BmrFI CCNGG 7 cut(s) 168, 397, 425, 767, 918, 1237, 1545
BpiI GAAGAC 3 cut(s) 408, 892, 1691
BpmI CTGGAG 1 cut(s) 1523
Bpu14I TTCGAA 2 cut(s) 419, 1957
BpuEI CTTGAG 3 cut(s) 1007, 1175, 2080
BpuMI CCSGG 4 cut(s) 168, 397, 767, 1545
Bsa29I ATCGAT 2 cut(s) 1637, 1735
BsaBI GATNNNNATC 1 cut(s) 1905
BsaHI GRCGYC 2 cut(s) 756, 1075
BsaI GGTCTC 1 cut(s) 1681
BsaJI CCNNGG 4 cut(s) 732, 1029, 1219, 1740
BsaWI WCCGGW 2 cut(s) 1672, 1864
BsaXI ACNNNNNCTCC 4 cut(s) 285, 315, 2036, 2066
Bse118I RCCGGY 1 cut(s) 1672
Bse1I ACTGG 5 cut(s) 537, 572, 1131, 1471, 1814
Bse8I GATNNNNATC 1 cut(s) 1905
BseBI CCWGG 3 cut(s) 425, 918, 1237
BseCI ATCGAT 2 cut(s) 1637, 1735
BseDI CCNNGG 4 cut(s) 732, 1029, 1219, 1740
BseGI GGATG 6 cut(s) 45, 185, 862, 1297, 1554, 1941
BseJI GATNNNNATC 1 cut(s) 1905
BseMII CTCAG 2 cut(s) 473, 560
BseNI ACTGG 5 cut(s) 537, 572, 1131, 1471, 1814
BseRI GAGGAG 1 cut(s) 630
BseSI GKGCMC 1 cut(s) 1615
BseX3I CGGCCG 1 cut(s) 650
BseXI GCAGC 5 cut(s) 21, 342, 583, 1520, 1822
Bsh1236I CGCG 2 cut(s) 325, 1031
Bsh1285I CGRYCG 4 cut(s) 337, 350, 653, 657
BshFI GGCC 8 cut(s) 154, 171, 652, 731, 824, 1028, 1438, 1564
BshNI GGYRCC 1 cut(s) 628
BshTI ACCGGT 1 cut(s) 1672
BshVI ATCGAT 2 cut(s) 1637, 1735
BsiEI CGRYCG 4 cut(s) 337, 350, 653, 657
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 6 cut(s) 168, 397, 766, 1544, 1673, 1865
BslFI GGGAC 2 cut(s) 283, 628
BsmAI GTCTC 3 cut(s) 374, 1405, 1681
BsmFI GGGAC 2 cut(s) 283, 628
BsmI GAATGC 1 cut(s) 1592
BsnI GGCC 8 cut(s) 154, 171, 652, 731, 824, 1028, 1438, 1564
Bso31I GGTCTC 1 cut(s) 1681
BsoBI CYCGRG 1 cut(s) 377
Bsp119I TTCGAA 2 cut(s) 419, 1957
Bsp1286I GDGCHC 1 cut(s) 1615
Bsp1407I TGTACA 1 cut(s) 1456
Bsp143I GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
Bsp19I CCATGG 1 cut(s) 1740
BspANI GGCC 8 cut(s) 154, 171, 652, 731, 824, 1028, 1438, 1564
BspCNI CTCAG 2 cut(s) 472, 559
BspDI ATCGAT 2 cut(s) 1637, 1735
BspFNI CGCG 2 cut(s) 325, 1031
BspHI TCATGA 1 cut(s) 1873
BspLI GGNNCC 2 cut(s) 630, 1338
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 1731
BspT104I TTCGAA 2 cut(s) 419, 1957
BspT107I GGYRCC 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 1681
BsrBI CCGCTC 3 cut(s) 253, 260, 320
BsrFI RCCGGY 1 cut(s) 1672
BsrGI TGTACA 1 cut(s) 1456
BsrI ACTGG 5 cut(s) 537, 572, 1131, 1471, 1814
BssAI RCCGGY 1 cut(s) 1672
BssECI CCNNGG 4 cut(s) 732, 1029, 1219, 1740
BssMI GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
BssNAI GTATAC 2 cut(s) 1275, 1393
BssNI GRCGYC 2 cut(s) 756, 1075
BssT1I CCWWGG 3 cut(s) 732, 1219, 1740
Bst1107I GTATAC 2 cut(s) 1275, 1393
Bst2UI CCWGG 3 cut(s) 425, 918, 1237
Bst4CI ACNGT 6 cut(s) 297, 703, 743, 802, 1044, 1705
Bst6I CTCTTC 3 cut(s) 525, 888, 1070
BstACI GRCGYC 2 cut(s) 756, 1075
BstAPI GCANNNNNTGC 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 1456
BstBI TTCGAA 2 cut(s) 419, 1957
BstC8I GCNNGC 6 cut(s) 354, 721, 839, 1590, 1668, 1974
BstDEI CTNAG 6 cut(s) 459, 546, 724, 815, 1689, 2024
BstDSI CCRYGG 2 cut(s) 1029, 1740
BstEII GGTNACC 2 cut(s) 427, 881
BstF5I GGATG 6 cut(s) 45, 185, 862, 1297, 1554, 1941
BstFNI CGCG 2 cut(s) 325, 1031
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 8 cut(s) 456, 657, 1052, 1637, 1641, 1739, 1804, 2083
BstMAI GTCTC 3 cut(s) 374, 1405, 1681
BstMBI GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
BstMCI CGRYCG 4 cut(s) 337, 350, 653, 657
BstMWI GCNNNNNNNGC 7 cut(s) 133, 605, 785, 838, 1025, 1585, 1610
BstNI CCWGG 3 cut(s) 425, 918, 1237
BstNSI RCATGY 1 cut(s) 1463
BstPI GGTNACC 2 cut(s) 427, 881
BstSCI CCNGG 7 cut(s) 166, 395, 423, 765, 916, 1235, 1543
BstSFI CTRYAG 3 cut(s) 204, 739, 1569
BstSLI GKGCMC 1 cut(s) 1615
BstUI CGCG 2 cut(s) 325, 1031
BstV1I GCAGC 5 cut(s) 21, 342, 583, 1520, 1822
BstV2I GAAGAC 3 cut(s) 408, 892, 1691
BstZ17I GTATAC 2 cut(s) 1275, 1393
BstZI CGGCCG 1 cut(s) 650
Bsu15I ATCGAT 2 cut(s) 1637, 1735
BsuI GTATCC 2 cut(s) 1618, 1640
BsuRI GGCC 8 cut(s) 154, 171, 652, 731, 824, 1028, 1438, 1564
BsuTUI ATCGAT 2 cut(s) 1637, 1735
BtgI CCRYGG 2 cut(s) 1029, 1740
BtsCI GGATG 6 cut(s) 45, 185, 862, 1297, 1554, 1941
BtsI GCAGTG 2 cut(s) 1001, 1014
BtsIMutI CAGTG 3 cut(s) 565, 1001, 1014
Cac8I GCNNGC 6 cut(s) 354, 721, 839, 1590, 1668, 1974
CciI TCATGA 1 cut(s) 1873
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 1672
Cfr13I GGNCC 3 cut(s) 152, 170, 399
Cfr42I CCGCGG 1 cut(s) 1032
ClaI ATCGAT 2 cut(s) 1637, 1735
CseI GACGC 1 cut(s) 745
CsiI ACCWGGT 1 cut(s) 423
Csp6I GTAC 5 cut(s) 441, 699, 970, 1457, 1925
CspAI ACCGGT 1 cut(s) 1672
CviAII CATG 8 cut(s) 580, 904, 1247, 1460, 1477, 1741, 1767, 1874
CviQI GTAC 5 cut(s) 441, 699, 970, 1457, 1925
DdeI CTNAG 6 cut(s) 459, 546, 724, 815, 1689, 2024
DpnI GATC 8 cut(s) 455, 656, 1051, 1636, 1640, 1738, 1803, 2082
DpnII GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
DraIII CACNNNGTG 1 cut(s) 1519
EaeI YGGCCR 3 cut(s) 650, 729, 1562
EagI CGGCCG 1 cut(s) 650
Eam1104I CTCTTC 3 cut(s) 525, 888, 1070
EarI CTCTTC 3 cut(s) 525, 888, 1070
EclXI CGGCCG 1 cut(s) 650
Eco130I CCWWGG 3 cut(s) 732, 1219, 1740
Eco31I GGTCTC 1 cut(s) 1681
Eco47I GGWCC 1 cut(s) 399
Eco52I CGGCCG 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 377
Eco91I GGTNACC 2 cut(s) 427, 881
EcoO65I GGTNACC 2 cut(s) 427, 881
EcoRII CCWGG 3 cut(s) 423, 916, 1235
EcoT14I CCWWGG 3 cut(s) 732, 1219, 1740
ErhI CCWWGG 3 cut(s) 732, 1219, 1740
FaeI CATG 8 cut(s) 583, 907, 1250, 1463, 1480, 1744, 1770, 1877
FalI AAGNNNNNCTT 4 cut(s) 1154, 1186, 2007, 2039
FaqI GGGAC 2 cut(s) 283, 628
FatI CATG 8 cut(s) 579, 903, 1246, 1459, 1476, 1740, 1766, 1873
FauI CCCGC 6 cut(s) 265, 312, 325, 728, 1024, 1581
FbaI TGATCA 1 cut(s) 1801
FblI GTMKAC 2 cut(s) 1274, 1392
Fnu4HI GCNGC 9 cut(s) 35, 328, 331, 597, 650, 1029, 1509, 1811, 1842
FokI GGATG 6 cut(s) 32, 172, 869, 1304, 1541, 1948
Fsp4HI GCNGC 9 cut(s) 35, 328, 331, 597, 650, 1029, 1509, 1811, 1842
FspBI CTAG 4 cut(s) 384, 990, 1094, 1434
GlaI GCGC 1 cut(s) 326
GluI GCNGC 9 cut(s) 35, 328, 331, 597, 650, 1029, 1509, 1811, 1842
GsuI CTGGAG 1 cut(s) 1523
HaeIII GGCC 8 cut(s) 154, 171, 652, 731, 824, 1028, 1438, 1564
HapII CCGG 6 cut(s) 168, 397, 766, 1544, 1673, 1865
HgaI GACGC 1 cut(s) 745
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 2 cut(s) 756, 1075
Hin1II CATG 8 cut(s) 583, 907, 1250, 1463, 1480, 1744, 1770, 1877
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HinfI GANTC 6 cut(s) 115, 1035, 1182, 1326, 1861, 1939
HpaII CCGG 6 cut(s) 168, 397, 766, 1544, 1673, 1865
Hpy166II GTNNAC 6 cut(s) 862, 1014, 1275, 1393, 1986, 2044
Hpy188I TCNGA 6 cut(s) 108, 162, 926, 1054, 1073, 1944
Hpy188III TCNNGA 9 cut(s) 377, 379, 1047, 1082, 1242, 1323, 1502, 1874, 1916
Hpy8I GTNNAC 6 cut(s) 862, 1014, 1275, 1393, 1986, 2044
Hpy99I CGWCG 3 cut(s) 761, 1077, 1080
HpyAV CCTTC 7 cut(s) 255, 402, 682, 746, 1329, 1780, 1925
HpyCH4III ACNGT 6 cut(s) 297, 703, 743, 802, 1044, 1705
HpyCH4IV ACGT 3 cut(s) 1075, 1615, 1711
HpyCH4V TGCA 7 cut(s) 37, 206, 364, 788, 958, 1298, 1653
HpyF10VI GCNNNNNNNGC 7 cut(s) 133, 605, 785, 838, 1025, 1585, 1610
HpyF3I CTNAG 6 cut(s) 459, 546, 724, 815, 1689, 2024
HpySE526I ACGT 3 cut(s) 1075, 1615, 1711
Hsp92I GRCGYC 2 cut(s) 756, 1075
Hsp92II CATG 8 cut(s) 583, 907, 1250, 1463, 1480, 1744, 1770, 1877
HspAI GCGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 1801
KspI CCGCGG 1 cut(s) 1032
Kzo9I GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
LmnI GCTCC 4 cut(s) 258, 325, 621, 937
Lsp1109I GCAGC 5 cut(s) 21, 342, 583, 1520, 1822
MabI ACCWGGT 1 cut(s) 423
MaeI CTAG 4 cut(s) 384, 990, 1094, 1434
MaeII ACGT 3 cut(s) 1075, 1615, 1711
MaeIII GTNAC 8 cut(s) 427, 796, 881, 1044, 1239, 1260, 1762, 1829
MalI GATC 8 cut(s) 455, 656, 1051, 1636, 1640, 1738, 1803, 2082
MbiI CCGCTC 3 cut(s) 253, 260, 320
MboI GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
MfeI CAATTG 2 cut(s) 953, 1583
MhlI GDGCHC 1 cut(s) 1615
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 8 cut(s) 591, 683, 953, 1138, 1251, 1342, 1583, 2009
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 5 cut(s) 185, 834, 1063, 1096, 2079
Mox20I TGGCCA 1 cut(s) 731
MroXI GAANNNNTTC 1 cut(s) 1214
MscI TGGCCA 1 cut(s) 731
MseI TTAA 6 cut(s) 192, 977, 1524, 1533, 1997, 2089
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 3 cut(s) 34, 333, 1031
MspI CCGG 6 cut(s) 168, 397, 766, 1544, 1673, 1865
MspR9I CCNGG 7 cut(s) 168, 397, 425, 767, 918, 1237, 1545
MunI CAATTG 2 cut(s) 953, 1583
Mva1269I GAATGC 1 cut(s) 1592
MvaI CCWGG 3 cut(s) 425, 918, 1237
MvnI CGCG 2 cut(s) 325, 1031
MwoI GCNNNNNNNGC 7 cut(s) 133, 605, 785, 838, 1025, 1585, 1610
NciI CCSGG 4 cut(s) 168, 397, 767, 1545
NcoI CCATGG 1 cut(s) 1740
NdeII GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
NlaIII CATG 8 cut(s) 583, 907, 1250, 1463, 1480, 1744, 1770, 1877
NlaIV GGNNCC 2 cut(s) 630, 1338
NmeAIII GCCGAG 1 cut(s) 1753
NmuCI GTSAC 7 cut(s) 427, 796, 881, 1044, 1239, 1260, 1829
NspI RCATGY 1 cut(s) 1463
NspV TTCGAA 2 cut(s) 419, 1957
OliI CACNNNNGTG 1 cut(s) 570
PaeR7I CTCGAG 1 cut(s) 377
PagI TCATGA 1 cut(s) 1873
PciI ACATGT 1 cut(s) 1459
PcsI WCGNNNNNNNCGW 2 cut(s) 343, 449
PctI GAATGC 1 cut(s) 1592
PdmI GAANNNNTTC 1 cut(s) 1214
PfeI GAWTC 5 cut(s) 1035, 1182, 1326, 1861, 1939
PflFI GACNNNGTC 1 cut(s) 1077
PflMI CCANNNNNTGG 2 cut(s) 853, 1477
PfoI TCCNGGA 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 1672
PkrI GCNGC 9 cut(s) 36, 329, 332, 598, 651, 1030, 1510, 1812, 1843
Ple19I CGATCG 1 cut(s) 657
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PscI ACATGT 1 cut(s) 1459
Psp6I CCWGG 3 cut(s) 423, 916, 1235
PspEI GGTNACC 2 cut(s) 427, 881
PspGI CCWGG 3 cut(s) 423, 916, 1235
PspN4I GGNNCC 2 cut(s) 630, 1338
PspPI GGNCC 3 cut(s) 152, 170, 399
PstI CTGCAG 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 1077
PvuI CGATCG 1 cut(s) 657
RsaI GTAC 5 cut(s) 442, 700, 971, 1458, 1926
RsaNI GTAC 5 cut(s) 441, 699, 970, 1457, 1925
RseI CAYNNNNRTG 1 cut(s) 570
SacII CCGCGG 1 cut(s) 1032
SaqAI TTAA 6 cut(s) 192, 977, 1524, 1533, 1997, 2089
SatI GCNGC 9 cut(s) 35, 328, 331, 597, 650, 1029, 1509, 1811, 1842
Sau3AI GATC 8 cut(s) 453, 654, 1049, 1634, 1638, 1736, 1801, 2080
Sau96I GGNCC 3 cut(s) 152, 170, 399
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 7 cut(s) 168, 397, 425, 767, 918, 1237, 1545
SduI GDGCHC 1 cut(s) 1615
SexAI ACCWGGT 1 cut(s) 423
SfcI CTRYAG 3 cut(s) 204, 739, 1569
Sfr274I CTCGAG 1 cut(s) 377
Sfr303I CCGCGG 1 cut(s) 1032
SfuI TTCGAA 2 cut(s) 419, 1957
SgrBI CCGCGG 1 cut(s) 1032
SinI GGWCC 1 cut(s) 399
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 4 cut(s) 377, 1022, 1190, 2059
SmoI CTYRAG 4 cut(s) 377, 1022, 1190, 2059
Sse9I AATT 8 cut(s) 591, 683, 953, 1138, 1251, 1342, 1583, 2009
SspI AATATT 1 cut(s) 1214
SspMI CTAG 4 cut(s) 384, 990, 1094, 1434
StyD4I CCNGG 7 cut(s) 166, 395, 423, 765, 916, 1235, 1543
StyI CCWWGG 3 cut(s) 732, 1219, 1740
TaaI ACNGT 6 cut(s) 297, 703, 743, 802, 1044, 1705
TaiI ACGT 3 cut(s) 1078, 1618, 1714
TasI AATT 8 cut(s) 591, 683, 953, 1138, 1251, 1342, 1583, 2009
TatI WGTACW 1 cut(s) 1456
TauI GCSGC 4 cut(s) 330, 652, 1031, 1844
TfiI GAWTC 5 cut(s) 1035, 1182, 1326, 1861, 1939
Tru1I TTAA 6 cut(s) 192, 977, 1524, 1533, 1997, 2089
Tru9I TTAA 6 cut(s) 192, 977, 1524, 1533, 1997, 2089
TscAI CASTG 3 cut(s) 572, 1001, 1021
TseFI GTSAC 7 cut(s) 427, 796, 881, 1044, 1239, 1260, 1829
TseI GCWGC 5 cut(s) 34, 330, 596, 1508, 1810
Tsp45I GTSAC 7 cut(s) 427, 796, 881, 1044, 1239, 1260, 1829
TspDTI ATGAA 6 cut(s) 362, 596, 892, 906, 1465, 1862
TspRI CASTG 3 cut(s) 572, 1001, 1021
Tth111I GACNNNGTC 1 cut(s) 1077
Van91I CCANNNNNTGG 2 cut(s) 853, 1477
VpaK11BI GGWCC 1 cut(s) 399
XapI RAATTY 1 cut(s) 1342
XceI RCATGY 1 cut(s) 1463
XhoI CTCGAG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 1274, 1392
XmnI GAANNNNTTC 1 cut(s) 1214
XspI CTAG 4 cut(s) 384, 990, 1094, 1434
ZraI GACGTC 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.