Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 50 | 5.3e-06 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 449 |
| AclWI | GGATC | 3 cut(s) | 374, 519, 720 |
| AcsI | RAATTY | 2 cut(s) | 330, 631 |
| AcuI | CTGAAG | 2 cut(s) | 438, 795 |
| AcvI | CACGTG | 1 cut(s) | 492 |
| AdeI | CACNNNGTG | 1 cut(s) | 302 |
| AfaI | GTAC | 3 cut(s) | 324, 545, 772 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 362, 363 |
| AflIII | ACRYGT | 1 cut(s) | 700 |
| AgsI | TTSAA | 5 cut(s) | 22, 346, 613, 683, 707 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 14, 46 |
| AluBI | AGCT | 5 cut(s) | 226, 401, 539, 806, 831 |
| AluI | AGCT | 5 cut(s) | 226, 401, 539, 806, 831 |
| Alw26I | GTCTC | 2 cut(s) | 101, 849 |
| AlwI | GGATC | 3 cut(s) | 374, 519, 720 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 539 |
| ApeKI | GCWGC | 1 cut(s) | 653 |
| ApoI | RAATTY | 2 cut(s) | 330, 631 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 26 |
| AsuC2I | CCSGG | 2 cut(s) | 320, 357 |
| BbrPI | CACGTG | 1 cut(s) | 492 |
| BbvI | GCAGC | 1 cut(s) | 665 |
| BccI | CCATC | 1 cut(s) | 139 |
| BciVI | GTATCC | 1 cut(s) | 398 |
| BcnI | CCSGG | 2 cut(s) | 320, 357 |
| BcoDI | GTCTC | 2 cut(s) | 101, 849 |
| BfaI | CTAG | 3 cut(s) | 48, 522, 836 |
| BfuI | GTATCC | 1 cut(s) | 398 |
| BglII | AGATCT | 1 cut(s) | 7 |
| BisI | GCNGC | 1 cut(s) | 654 |
| BlsI | GCNGC | 1 cut(s) | 655 |
| Bme1390I | CCNGG | 2 cut(s) | 320, 357 |
| BmrFI | CCNGG | 2 cut(s) | 320, 357 |
| BpuMI | CCSGG | 2 cut(s) | 320, 357 |
| BsaAI | YACGTR | 1 cut(s) | 492 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 362, 363 |
| Bse1I | ACTGG | 3 cut(s) | 115, 528, 677 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 362, 363 |
| BseMII | CTCAG | 2 cut(s) | 326, 531 |
| BseNI | ACTGG | 3 cut(s) | 115, 528, 677 |
| BseXI | GCAGC | 1 cut(s) | 665 |
| BsgI | GTGCAG | 1 cut(s) | 552 |
| BsiSI | CCGG | 2 cut(s) | 320, 357 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 362, 363 |
| BsmAI | GTCTC | 2 cut(s) | 101, 849 |
| Bsp143I | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| BspCNI | CTCAG | 2 cut(s) | 327, 532 |
| BspPI | GGATC | 3 cut(s) | 374, 519, 720 |
| BsrI | ACTGG | 3 cut(s) | 115, 528, 677 |
| BssMI | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| BstBAI | YACGTR | 1 cut(s) | 492 |
| BstC8I | GCNNGC | 2 cut(s) | 224, 294 |
| BstDEI | CTNAG | 2 cut(s) | 335, 540 |
| BstKTI | GATC | 7 cut(s) | 10, 53, 310, 369, 527, 715, 781 |
| BstMAI | GTCTC | 2 cut(s) | 101, 849 |
| BstMBI | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 422, 766 |
| BstNSI | RCATGY | 5 cut(s) | 126, 296, 316, 704, 760 |
| BstSCI | CCNGG | 2 cut(s) | 318, 355 |
| BstV1I | GCAGC | 1 cut(s) | 665 |
| BstX2I | RGATCY | 2 cut(s) | 7, 524 |
| BstYI | RGATCY | 2 cut(s) | 7, 524 |
| BsuI | GTATCC | 1 cut(s) | 398 |
| BtsIMutI | CAGTG | 2 cut(s) | 435, 535 |
| Cac8I | GCNNGC | 2 cut(s) | 224, 294 |
| CaiI | CAGNNNCTG | 1 cut(s) | 539 |
| Csp6I | GTAC | 3 cut(s) | 323, 544, 771 |
| CviAII | CATG | 9 cut(s) | 123, 289, 293, 313, 370, 560, 686, 701, 757 |
| CviQI | GTAC | 3 cut(s) | 323, 544, 771 |
| DdeI | CTNAG | 2 cut(s) | 335, 540 |
| DpnI | GATC | 7 cut(s) | 9, 52, 309, 368, 526, 714, 780 |
| DpnII | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| DraIII | CACNNNGTG | 1 cut(s) | 302 |
| Eco32I | GATATC | 2 cut(s) | 206, 793 |
| Eco57I | CTGAAG | 2 cut(s) | 438, 795 |
| Eco72I | CACGTG | 1 cut(s) | 492 |
| EcoRI | GAATTC | 1 cut(s) | 330 |
| EcoRV | GATATC | 2 cut(s) | 206, 793 |
| EcoT22I | ATGCAT | 1 cut(s) | 294 |
| FaeI | CATG | 9 cut(s) | 126, 292, 296, 316, 373, 563, 689, 704, 760 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 436, 468, 768, 800 |
| FatI | CATG | 9 cut(s) | 122, 288, 292, 312, 369, 559, 685, 700, 756 |
| FauNDI | CATATG | 3 cut(s) | 262, 412, 763 |
| FblI | GTMKAC | 1 cut(s) | 449 |
| Fnu4HI | GCNGC | 1 cut(s) | 654 |
| Fsp4HI | GCNGC | 1 cut(s) | 654 |
| FspBI | CTAG | 3 cut(s) | 48, 522, 836 |
| GluI | GCNGC | 1 cut(s) | 654 |
| HapII | CCGG | 2 cut(s) | 320, 357 |
| Hin1II | CATG | 9 cut(s) | 126, 292, 296, 316, 373, 563, 689, 704, 760 |
| HincII | GTYRAC | 2 cut(s) | 94, 128 |
| HindII | GTYRAC | 2 cut(s) | 94, 128 |
| HinfI | GANTC | 1 cut(s) | 740 |
| HpaII | CCGG | 2 cut(s) | 320, 357 |
| Hpy166II | GTNNAC | 4 cut(s) | 94, 116, 128, 450 |
| Hpy188I | TCNGA | 2 cut(s) | 336, 745 |
| Hpy188III | TCNNGA | 3 cut(s) | 176, 796, 813 |
| Hpy8I | GTNNAC | 4 cut(s) | 94, 116, 128, 450 |
| HpyAV | CCTTC | 2 cut(s) | 53, 438 |
| HpyCH4IV | ACGT | 1 cut(s) | 491 |
| HpyCH4V | TGCA | 8 cut(s) | 122, 260, 292, 296, 316, 416, 533, 788 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 422, 766 |
| HpyF3I | CTNAG | 2 cut(s) | 335, 540 |
| HpySE526I | ACGT | 1 cut(s) | 491 |
| Hsp92II | CATG | 9 cut(s) | 126, 292, 296, 316, 373, 563, 689, 704, 760 |
| Kzo9I | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| Lsp1109I | GCAGC | 1 cut(s) | 665 |
| MaeI | CTAG | 3 cut(s) | 48, 522, 836 |
| MaeII | ACGT | 1 cut(s) | 491 |
| MaeIII | GTNAC | 4 cut(s) | 458, 479, 487, 641 |
| MalI | GATC | 7 cut(s) | 9, 52, 309, 368, 526, 714, 780 |
| MboI | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| MboII | GAAGA | 2 cut(s) | 317, 788 |
| MflI | RGATCY | 2 cut(s) | 7, 524 |
| MluCI | AATT | 4 cut(s) | 161, 284, 330, 631 |
| MlyI | GAGTC | 1 cut(s) | 749 |
| MmeI | TCCRAC | 1 cut(s) | 717 |
| MnlI | CCTC | 5 cut(s) | 8, 34, 330, 470, 542 |
| Mph1103I | ATGCAT | 1 cut(s) | 294 |
| MroXI | GAANNNNTTC | 1 cut(s) | 26 |
| MseI | TTAA | 1 cut(s) | 753 |
| MslI | CAYNNNNRTG | 2 cut(s) | 41, 755 |
| MspI | CCGG | 2 cut(s) | 320, 357 |
| MspR9I | CCNGG | 2 cut(s) | 320, 357 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 422, 766 |
| NciI | CCSGG | 2 cut(s) | 320, 357 |
| NdeI | CATATG | 3 cut(s) | 262, 412, 763 |
| NdeII | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| NlaIII | CATG | 9 cut(s) | 126, 292, 296, 316, 373, 563, 689, 704, 760 |
| NmuCI | GTSAC | 2 cut(s) | 487, 641 |
| NsiI | ATGCAT | 1 cut(s) | 294 |
| NspI | RCATGY | 5 cut(s) | 126, 296, 316, 704, 760 |
| PaeI | GCATGC | 1 cut(s) | 296 |
| PciI | ACATGT | 1 cut(s) | 700 |
| PdmI | GAANNNNTTC | 1 cut(s) | 26 |
| PkrI | GCNGC | 1 cut(s) | 655 |
| PleI | GAGTC | 1 cut(s) | 748 |
| PmaCI | CACGTG | 1 cut(s) | 492 |
| PmlI | CACGTG | 1 cut(s) | 492 |
| PpsI | GAGTC | 1 cut(s) | 748 |
| Ppu21I | YACGTR | 1 cut(s) | 492 |
| PscI | ACATGT | 1 cut(s) | 700 |
| PspCI | CACGTG | 1 cut(s) | 492 |
| PstNI | CAGNNNCTG | 1 cut(s) | 539 |
| PsuI | RGATCY | 2 cut(s) | 7, 524 |
| RsaI | GTAC | 3 cut(s) | 324, 545, 772 |
| RsaNI | GTAC | 3 cut(s) | 323, 544, 771 |
| RseI | CAYNNNNRTG | 2 cut(s) | 41, 755 |
| SaqAI | TTAA | 1 cut(s) | 753 |
| SatI | GCNGC | 1 cut(s) | 654 |
| Sau3AI | GATC | 7 cut(s) | 7, 50, 307, 366, 524, 712, 778 |
| SchI | GAGTC | 1 cut(s) | 749 |
| ScrFI | CCNGG | 2 cut(s) | 320, 357 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 41, 755 |
| SphI | GCATGC | 1 cut(s) | 296 |
| Sse9I | AATT | 4 cut(s) | 161, 284, 330, 631 |
| SspMI | CTAG | 3 cut(s) | 48, 522, 836 |
| StyD4I | CCNGG | 2 cut(s) | 318, 355 |
| TaiI | ACGT | 1 cut(s) | 494 |
| TaqI | TCGA | 1 cut(s) | 715 |
| TasI | AATT | 4 cut(s) | 161, 284, 330, 631 |
| TatI | WGTACW | 1 cut(s) | 543 |
| Tru1I | TTAA | 1 cut(s) | 753 |
| Tru9I | TTAA | 1 cut(s) | 753 |
| TscAI | CASTG | 2 cut(s) | 442, 535 |
| TseFI | GTSAC | 2 cut(s) | 487, 641 |
| TseI | GCWGC | 1 cut(s) | 653 |
| Tsp45I | GTSAC | 2 cut(s) | 487, 641 |
| TspDTI | ATGAA | 5 cut(s) | 17, 277, 611, 644, 712 |
| TspRI | CASTG | 2 cut(s) | 442, 535 |
| XapI | RAATTY | 2 cut(s) | 330, 631 |
| XceI | RCATGY | 5 cut(s) | 126, 296, 316, 704, 760 |
| XmiI | GTMKAC | 1 cut(s) | 449 |
| XmnI | GAANNNNTTC | 1 cut(s) | 26 |
| XspI | CTAG | 3 cut(s) | 48, 522, 836 |
| Zsp2I | ATGCAT | 1 cut(s) | 294 |