Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 156 - 231 | 4.4e-15 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 263 - 324 | 2.6e-08 | GAG-pre-integrase domain |
| rve | PF00665 | 337 - 438 | 4.6e-13 | Integrase core domain |
| SH3_retrovirus | PF25597 | 512 - 573 | 6.7e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 740 - 982 | 3.8e-79 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1077, 1176 |
| AccB1I | GGYRCC | 2 cut(s) | 482, 1232 |
| AccI | GTMKAC | 2 cut(s) | 971, 3245 |
| AclWI | GGATC | 6 cut(s) | 143, 1574, 1808, 1842, 3121, 3134 |
| AcoI | YGGCCR | 3 cut(s) | 2305, 2394, 2844 |
| AcsI | RAATTY | 7 cut(s) | 281, 359, 523, 951, 1212, 2068, 2146 |
| AcuI | CTGAAG | 3 cut(s) | 51, 323, 399 |
| AfaI | GTAC | 8 cut(s) | 579, 645, 794, 1029, 1082, 2456, 2612, 2712 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 68, 587, 805, 1322, 1772, 2540 |
| AflII | CTTAAG | 3 cut(s) | 1139, 2021, 2771 |
| AflIII | ACRYGT | 2 cut(s) | 550, 1191 |
| AjnI | CCWGG | 4 cut(s) | 176, 738, 1746, 2524 |
| Alw26I | GTCTC | 3 cut(s) | 52, 1413, 2372 |
| AlwI | GGATC | 6 cut(s) | 143, 1574, 1808, 1842, 3121, 3134 |
| Ama87I | CYCGRG | 3 cut(s) | 1002, 1110, 2340 |
| AoxI | GGCC | 4 cut(s) | 2305, 2394, 2447, 2844 |
| ApeKI | GCWGC | 5 cut(s) | 266, 287, 1847, 2105, 2268 |
| ApoI | RAATTY | 7 cut(s) | 281, 359, 523, 951, 1212, 2068, 2146 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2282, 2314, 3041, 3073 |
| AseI | ATTAAT | 2 cut(s) | 272, 684 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 939, 1698, 2089 |
| AspS9I | GGNCC | 3 cut(s) | 742, 1046, 2448 |
| AsuC2I | CCSGG | 1 cut(s) | 111 |
| AsuHPI | GGTGA | 9 cut(s) | 779, 820, 1467, 1884, 2501, 2555, 2987, 3008, 3025 |
| AsuII | TTCGAA | 1 cut(s) | 2683 |
| AsuNHI | GCTAGC | 1 cut(s) | 1007 |
| AvaI | CYCGRG | 3 cut(s) | 1002, 1110, 2340 |
| AvaII | GGWCC | 2 cut(s) | 742, 1046 |
| AxyI | CCTNAGG | 2 cut(s) | 15, 1584 |
| BaeGI | GKGCMC | 1 cut(s) | 213 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 174, 207 |
| BalI | TGGCCA | 3 cut(s) | 2307, 2396, 2846 |
| BamHI | GGATCC | 1 cut(s) | 3126 |
| BanI | GGYRCC | 2 cut(s) | 482, 1232 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 47, 79, 1981, 2013 |
| BbvI | GCAGC | 5 cut(s) | 253, 299, 1834, 2092, 2280 |
| BccI | CCATC | 5 cut(s) | 380, 655, 1064, 1897, 2908 |
| BciT130I | CCWGG | 4 cut(s) | 178, 740, 1748, 2526 |
| BciVI | GTATCC | 2 cut(s) | 175, 2067 |
| BclI | TGATCA | 1 cut(s) | 490 |
| BcnI | CCSGG | 1 cut(s) | 111 |
| BcoDI | GTCTC | 3 cut(s) | 52, 1413, 2372 |
| BfmI | CTRYAG | 2 cut(s) | 432, 2181 |
| BfrI | CTTAAG | 3 cut(s) | 1139, 2021, 2771 |
| BfuI | GTATCC | 2 cut(s) | 175, 2067 |
| BglII | AGATCT | 1 cut(s) | 2893 |
| BisI | GCNGC | 5 cut(s) | 267, 288, 1848, 2106, 2269 |
| BlsI | GCNGC | 5 cut(s) | 268, 289, 1849, 2107, 2270 |
| BmcAI | AGTACT | 1 cut(s) | 1082 |
| Bme1390I | CCNGG | 5 cut(s) | 111, 178, 740, 1748, 2526 |
| Bme18I | GGWCC | 2 cut(s) | 742, 1046 |
| BmeT110I | CYCGRG | 3 cut(s) | 1002, 1110, 2340 |
| BmgT120I | GGNCC | 3 cut(s) | 742, 1046, 2448 |
| BmiI | GGNNCC | 5 cut(s) | 484, 1047, 1234, 1777, 3128 |
| BmrFI | CCNGG | 5 cut(s) | 111, 178, 740, 1748, 2526 |
| BmrI | ACTGGG | 1 cut(s) | 3226 |
| BmsI | GCATC | 7 cut(s) | 119, 316, 459, 868, 880, 1622, 3199 |
| BmtI | GCTAGC | 1 cut(s) | 1011 |
| BmuI | ACTGGG | 1 cut(s) | 3226 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 60, 92, 1999, 2031 |
| BpmI | CTGGAG | 2 cut(s) | 207, 2533 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1268 |
| Bpu14I | TTCGAA | 1 cut(s) | 2683 |
| BpuEI | CTTGAG | 6 cut(s) | 837, 1376, 1854, 1905, 2520, 3125 |
| BpuMI | CCSGG | 1 cut(s) | 111 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1615, 2217 |
| BsaI | GGTCTC | 2 cut(s) | 52, 1413 |
| BsaJI | CCNNGG | 3 cut(s) | 177, 753, 2208 |
| BsaWI | WCCGGW | 1 cut(s) | 2389 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2371, 2401 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 68, 587, 805, 1322, 1772, 2540 |
| Bse1I | ACTGG | 2 cut(s) | 190, 3221 |
| Bse21I | CCTNAGG | 2 cut(s) | 15, 1584 |
| Bse3DI | GCAATG | 2 cut(s) | 347, 3312 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1615, 2217 |
| BseBI | CCWGG | 4 cut(s) | 178, 740, 1748, 2526 |
| BseDI | CCNNGG | 3 cut(s) | 177, 753, 2208 |
| BseGI | GGATG | 7 cut(s) | 406, 886, 1637, 1933, 2218, 2470, 2530 |
| BseJI | GATNNNNATC | 2 cut(s) | 1615, 2217 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 68, 587, 805, 1322, 1772, 2540 |
| BseMI | GCAATG | 2 cut(s) | 347, 3312 |
| BseNI | ACTGG | 2 cut(s) | 190, 3221 |
| BseRI | GAGGAG | 4 cut(s) | 1044, 1824, 1919, 2007 |
| BseSI | GKGCMC | 1 cut(s) | 213 |
| BseXI | GCAGC | 5 cut(s) | 253, 299, 1834, 2092, 2280 |
| BsgI | GTGCAG | 2 cut(s) | 76, 2682 |
| BshFI | GGCC | 4 cut(s) | 2307, 2396, 2449, 2846 |
| BshNI | GGYRCC | 2 cut(s) | 482, 1232 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1002, 1110, 2340 |
| BsiSI | CCGG | 2 cut(s) | 111, 2390 |
| BslFI | GGGAC | 2 cut(s) | 252, 1059 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 68, 587, 805, 1322, 1772, 2540 |
| BsmAI | GTCTC | 3 cut(s) | 52, 1413, 2372 |
| BsmFI | GGGAC | 2 cut(s) | 252, 1059 |
| BsmI | GAATGC | 1 cut(s) | 2477 |
| BsnI | GGCC | 4 cut(s) | 2307, 2396, 2449, 2846 |
| Bso31I | GGTCTC | 2 cut(s) | 52, 1413 |
| BsoBI | CYCGRG | 3 cut(s) | 1002, 1110, 2340 |
| Bsp119I | TTCGAA | 1 cut(s) | 2683 |
| Bsp1286I | GDGCHC | 1 cut(s) | 213 |
| Bsp1407I | TGTACA | 1 cut(s) | 1027 |
| BspANI | GGCC | 4 cut(s) | 2307, 2396, 2449, 2846 |
| BspHI | TCATGA | 2 cut(s) | 453, 2134 |
| BspLI | GGNNCC | 5 cut(s) | 484, 1047, 1234, 1777, 3128 |
| BspOI | GCTAGC | 1 cut(s) | 1011 |
| BspPI | GGATC | 6 cut(s) | 143, 1574, 1808, 1842, 3121, 3134 |
| BspQI | GCTCTTC | 2 cut(s) | 3, 3287 |
| BspT104I | TTCGAA | 1 cut(s) | 2683 |
| BspT107I | GGYRCC | 2 cut(s) | 482, 1232 |
| BspTI | CTTAAG | 3 cut(s) | 1139, 2021, 2771 |
| BspTNI | GGTCTC | 2 cut(s) | 52, 1413 |
| BsrDI | GCAATG | 2 cut(s) | 347, 3312 |
| BsrGI | TGTACA | 1 cut(s) | 1027 |
| BsrI | ACTGG | 2 cut(s) | 190, 3221 |
| BssECI | CCNNGG | 3 cut(s) | 177, 753, 2208 |
| BssT1I | CCWWGG | 2 cut(s) | 753, 2208 |
| Bst2UI | CCWGG | 4 cut(s) | 178, 740, 1748, 2526 |
| Bst4CI | ACNGT | 3 cut(s) | 25, 243, 2410 |
| Bst6I | CTCTTC | 6 cut(s) | 3, 50, 945, 2496, 3151, 3287 |
| BstAFI | CTTAAG | 3 cut(s) | 1139, 2021, 2771 |
| BstAUI | TGTACA | 1 cut(s) | 1027 |
| BstBI | TTCGAA | 1 cut(s) | 2683 |
| BstC8I | GCNNGC | 5 cut(s) | 174, 448, 1009, 1013, 3090 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 66, 585, 803, 2538 |
| BstF5I | GGATG | 7 cut(s) | 406, 886, 1637, 1933, 2218, 2470, 2530 |
| BstMAI | GTCTC | 3 cut(s) | 52, 1413, 2372 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 443, 2393, 3218, 3227 |
| BstNI | CCWGG | 4 cut(s) | 178, 740, 1748, 2526 |
| BstNSI | RCATGY | 5 cut(s) | 446, 554, 1195, 1553, 3092 |
| BstSCI | CCNGG | 5 cut(s) | 109, 176, 738, 1746, 2524 |
| BstSFI | CTRYAG | 2 cut(s) | 432, 2181 |
| BstSLI | GKGCMC | 1 cut(s) | 213 |
| BstV1I | GCAGC | 5 cut(s) | 253, 299, 1834, 2092, 2280 |
| BstX2I | RGATCY | 6 cut(s) | 135, 1579, 1813, 1834, 2893, 3126 |
| BstYI | RGATCY | 6 cut(s) | 135, 1579, 1813, 1834, 2893, 3126 |
| Bsu36I | CCTNAGG | 2 cut(s) | 15, 1584 |
| BsuI | GTATCC | 2 cut(s) | 175, 2067 |
| BsuRI | GGCC | 4 cut(s) | 2307, 2396, 2449, 2846 |
| BtsCI | GGATG | 7 cut(s) | 406, 886, 1637, 1933, 2218, 2470, 2530 |
| BtsI | GCAGTG | 2 cut(s) | 88, 2665 |
| BtsIMutI | CAGTG | 4 cut(s) | 88, 231, 486, 2665 |
| Cac8I | GCNNGC | 5 cut(s) | 174, 448, 1009, 1013, 3090 |
| CciI | TCATGA | 2 cut(s) | 453, 2134 |
| Cfr13I | GGNCC | 3 cut(s) | 742, 1046, 2448 |
| Csp6I | GTAC | 8 cut(s) | 578, 644, 793, 1028, 1081, 2455, 2611, 2711 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1284, 1319 |
| CviQI | GTAC | 8 cut(s) | 578, 644, 793, 1028, 1081, 2455, 2611, 2711 |
| EaeI | YGGCCR | 3 cut(s) | 2305, 2394, 2844 |
| Eam1104I | CTCTTC | 6 cut(s) | 3, 50, 945, 2496, 3151, 3287 |
| EarI | CTCTTC | 6 cut(s) | 3, 50, 945, 2496, 3151, 3287 |
| Eco130I | CCWWGG | 2 cut(s) | 753, 2208 |
| Eco31I | GGTCTC | 2 cut(s) | 52, 1413 |
| Eco32I | GATATC | 3 cut(s) | 1039, 1994, 3137 |
| Eco47I | GGWCC | 2 cut(s) | 742, 1046 |
| Eco57I | CTGAAG | 3 cut(s) | 51, 323, 399 |
| Eco81I | CCTNAGG | 2 cut(s) | 15, 1584 |
| Eco88I | CYCGRG | 3 cut(s) | 1002, 1110, 2340 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 66, 585, 803, 2538 |
| EcoO109I | RGGNCCY | 1 cut(s) | 742 |
| EcoRII | CCWGG | 4 cut(s) | 176, 738, 1746, 2524 |
| EcoRV | GATATC | 3 cut(s) | 1039, 1994, 3137 |
| EcoT14I | CCWWGG | 2 cut(s) | 753, 2208 |
| EcoT22I | ATGCAT | 2 cut(s) | 2479, 3090 |
| ErhI | CCWWGG | 2 cut(s) | 753, 2208 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 825, 857, 924, 956, 1821, 1853, 2765, 2797 |
| FaqI | GGGAC | 2 cut(s) | 252, 1059 |
| FauNDI | CATATG | 1 cut(s) | 495 |
| FbaI | TGATCA | 1 cut(s) | 490 |
| FblI | GTMKAC | 2 cut(s) | 971, 3245 |
| Fnu4HI | GCNGC | 5 cut(s) | 267, 288, 1848, 2106, 2269 |
| FokI | GGATG | 7 cut(s) | 413, 873, 1644, 1940, 2225, 2477, 2517 |
| Fsp4HI | GCNGC | 5 cut(s) | 267, 288, 1848, 2106, 2269 |
| GluI | GCNGC | 5 cut(s) | 267, 288, 1848, 2106, 2269 |
| GsuI | CTGGAG | 2 cut(s) | 207, 2533 |
| HaeIII | GGCC | 4 cut(s) | 2307, 2396, 2449, 2846 |
| HapII | CCGG | 2 cut(s) | 111, 2390 |
| HincII | GTYRAC | 2 cut(s) | 2368, 2437 |
| HindII | GTYRAC | 2 cut(s) | 2368, 2437 |
| HindIII | AAGCTT | 2 cut(s) | 515, 1136 |
| HpaI | GTTAAC | 1 cut(s) | 2437 |
| HpaII | CCGG | 2 cut(s) | 111, 2390 |
| HphI | GGTGA | 9 cut(s) | 779, 820, 1467, 1884, 2501, 2555, 2987, 3008, 3025 |
| HpyAV | CCTTC | 9 cut(s) | 436, 555, 764, 1905, 1937, 2243, 2492, 2534, 2966 |
| HpyCH4III | ACNGT | 3 cut(s) | 25, 243, 2410 |
| HpyCH4IV | ACGT | 1 cut(s) | 877 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 443, 2393, 3218, 3227 |
| HpySE526I | ACGT | 1 cut(s) | 877 |
| Ksp22I | TGATCA | 1 cut(s) | 490 |
| KspAI | GTTAAC | 1 cut(s) | 2437 |
| LguI | GCTCTTC | 2 cut(s) | 3, 3287 |
| LmnI | GCTCC | 2 cut(s) | 1057, 2392 |
| Lsp1109I | GCAGC | 5 cut(s) | 253, 299, 1834, 2092, 2280 |
| LweI | GCATC | 7 cut(s) | 119, 316, 459, 868, 880, 1622, 3199 |
| MaeII | ACGT | 1 cut(s) | 877 |
| MaeIII | GTNAC | 7 cut(s) | 826, 1087, 1114, 1183, 1257, 2543, 2935 |
| MfeI | CAATTG | 1 cut(s) | 3150 |
| MflI | RGATCY | 6 cut(s) | 135, 1579, 1813, 1834, 2893, 3126 |
| MhlI | GDGCHC | 1 cut(s) | 213 |
| MlsI | TGGCCA | 3 cut(s) | 2307, 2396, 2846 |
| MluNI | TGGCCA | 3 cut(s) | 2307, 2396, 2846 |
| MlyI | GAGTC | 5 cut(s) | 972, 1122, 1467, 2540, 3085 |
| MmeI | TCCRAC | 2 cut(s) | 322, 1776 |
| Mox20I | TGGCCA | 3 cut(s) | 2307, 2396, 2846 |
| Mph1103I | ATGCAT | 2 cut(s) | 2479, 3090 |
| MroXI | GAANNNNTTC | 3 cut(s) | 939, 1698, 2089 |
| MscI | TGGCCA | 3 cut(s) | 2307, 2396, 2846 |
| MslI | CAYNNNNRTG | 4 cut(s) | 324, 1190, 1386, 2840 |
| Msp20I | TGGCCA | 3 cut(s) | 2307, 2396, 2846 |
| MspA1I | CMGCKG | 1 cut(s) | 266 |
| MspCI | CTTAAG | 3 cut(s) | 1139, 2021, 2771 |
| MspI | CCGG | 2 cut(s) | 111, 2390 |
| MspR9I | CCNGG | 5 cut(s) | 111, 178, 740, 1748, 2526 |
| MunI | CAATTG | 1 cut(s) | 3150 |
| Mva1269I | GAATGC | 1 cut(s) | 2477 |
| MvaI | CCWGG | 4 cut(s) | 178, 740, 1748, 2526 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 443, 2393, 3218, 3227 |
| NciI | CCSGG | 1 cut(s) | 111 |
| NdeI | CATATG | 1 cut(s) | 495 |
| NheI | GCTAGC | 1 cut(s) | 1007 |
| NlaIV | GGNNCC | 5 cut(s) | 484, 1047, 1234, 1777, 3128 |
| NmuCI | GTSAC | 5 cut(s) | 826, 1114, 1183, 1257, 2543 |
| NsiI | ATGCAT | 2 cut(s) | 2479, 3090 |
| NspI | RCATGY | 5 cut(s) | 446, 554, 1195, 1553, 3092 |
| NspV | TTCGAA | 1 cut(s) | 2683 |
| PaeI | GCATGC | 1 cut(s) | 3092 |
| PaeR7I | CTCGAG | 3 cut(s) | 1002, 1110, 2340 |
| PagI | TCATGA | 2 cut(s) | 453, 2134 |
| PciI | ACATGT | 2 cut(s) | 550, 1191 |
| PciSI | GCTCTTC | 2 cut(s) | 3, 3287 |
| PctI | GAATGC | 1 cut(s) | 2477 |
| PdmI | GAANNNNTTC | 3 cut(s) | 939, 1698, 2089 |
| PfeI | GAWTC | 9 cut(s) | 338, 476, 935, 1061, 1281, 1401, 1721, 2666, 3178 |
| PfoI | TCCNGGA | 3 cut(s) | 109, 738, 1746 |
| PkrI | GCNGC | 5 cut(s) | 268, 289, 1849, 2107, 2270 |
| PleI | GAGTC | 5 cut(s) | 972, 1121, 1466, 2540, 3084 |
| PpsI | GAGTC | 5 cut(s) | 972, 1121, 1466, 2540, 3084 |
| PpuMI | RGGWCCY | 1 cut(s) | 742 |
| PscI | ACATGT | 2 cut(s) | 550, 1191 |
| PshBI | ATTAAT | 2 cut(s) | 272, 684 |
| PsiI | TTATAA | 2 cut(s) | 1077, 1176 |
| Psp5II | RGGWCCY | 1 cut(s) | 742 |
| Psp6I | CCWGG | 4 cut(s) | 176, 738, 1746, 2524 |
| PspGI | CCWGG | 4 cut(s) | 176, 738, 1746, 2524 |
| PspN4I | GGNNCC | 5 cut(s) | 484, 1047, 1234, 1777, 3128 |
| PspPI | GGNCC | 3 cut(s) | 742, 1046, 2448 |
| PspPPI | RGGWCCY | 1 cut(s) | 742 |
| PspXI | VCTCGAGB | 1 cut(s) | 2340 |
| PsuI | RGATCY | 6 cut(s) | 135, 1579, 1813, 1834, 2893, 3126 |
| PvuII | CAGCTG | 1 cut(s) | 266 |
| RsaI | GTAC | 8 cut(s) | 579, 645, 794, 1029, 1082, 2456, 2612, 2712 |
| RsaNI | GTAC | 8 cut(s) | 578, 644, 793, 1028, 1081, 2455, 2611, 2711 |
| RseI | CAYNNNNRTG | 4 cut(s) | 324, 1190, 1386, 2840 |
| SapI | GCTCTTC | 2 cut(s) | 3, 3287 |
| SatI | GCNGC | 5 cut(s) | 267, 288, 1848, 2106, 2269 |
| Sau96I | GGNCC | 3 cut(s) | 742, 1046, 2448 |
| ScaI | AGTACT | 1 cut(s) | 1082 |
| SchI | GAGTC | 5 cut(s) | 972, 1122, 1467, 2540, 3085 |
| ScrFI | CCNGG | 5 cut(s) | 111, 178, 740, 1748, 2526 |
| SduI | GDGCHC | 1 cut(s) | 213 |
| SfaNI | GCATC | 7 cut(s) | 119, 316, 459, 868, 880, 1622, 3199 |
| SfcI | CTRYAG | 2 cut(s) | 432, 2181 |
| Sfr274I | CTCGAG | 3 cut(s) | 1002, 1110, 2340 |
| SfuI | TTCGAA | 1 cut(s) | 2683 |
| SinI | GGWCC | 2 cut(s) | 742, 1046 |
| SlaI | CTCGAG | 3 cut(s) | 1002, 1110, 2340 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 324, 1190, 1386, 2840 |
| SphI | GCATGC | 1 cut(s) | 3092 |
| SspI | AATATT | 2 cut(s) | 1783, 3165 |
| StyD4I | CCNGG | 5 cut(s) | 109, 176, 738, 1746, 2524 |
| StyI | CCWWGG | 2 cut(s) | 753, 2208 |
| TaaI | ACNGT | 3 cut(s) | 25, 243, 2410 |
| TaiI | ACGT | 1 cut(s) | 880 |
| TaqI | TCGA | 6 cut(s) | 1003, 1111, 2341, 2683, 2970, 3238 |
| TatI | WGTACW | 3 cut(s) | 792, 1027, 1080 |
| TfiI | GAWTC | 9 cut(s) | 338, 476, 935, 1061, 1281, 1401, 1721, 2666, 3178 |
| TscAI | CASTG | 4 cut(s) | 95, 238, 493, 2665 |
| TseFI | GTSAC | 5 cut(s) | 826, 1114, 1183, 1257, 2543 |
| TseI | GCWGC | 5 cut(s) | 266, 287, 1847, 2105, 2268 |
| Tsp45I | GTSAC | 5 cut(s) | 826, 1114, 1183, 1257, 2543 |
| TspGWI | ACGGA | 1 cut(s) | 1338 |
| TspRI | CASTG | 4 cut(s) | 95, 238, 493, 2665 |
| Vha464I | CTTAAG | 3 cut(s) | 1139, 2021, 2771 |
| VpaK11BI | GGWCC | 2 cut(s) | 742, 1046 |
| VspI | ATTAAT | 2 cut(s) | 272, 684 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 66, 585, 803, 2538 |
| XapI | RAATTY | 7 cut(s) | 281, 359, 523, 951, 1212, 2068, 2146 |
| XbaI | TCTAGA | 2 cut(s) | 1057, 2899 |
| XceI | RCATGY | 5 cut(s) | 446, 554, 1195, 1553, 3092 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1401 |
| XhoI | CTCGAG | 3 cut(s) | 1002, 1110, 2340 |
| XmiI | GTMKAC | 2 cut(s) | 971, 3245 |
| XmnI | GAANNNNTTC | 3 cut(s) | 939, 1698, 2089 |
| ZrmI | AGTACT | 1 cut(s) | 1082 |
| Zsp2I | ATGCAT | 2 cut(s) | 2479, 3090 |