FvH4_2g23401

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000071
Physical Location & Seq
Reverse (-)
19151600 .. 19154024
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23401.t5

Sequence Viewer

Length: 1845 bp
ATGGGCTCCCGCTGTCGGCGTCGTCTCTACCTCCACCAGGAAATCCATCTCCGATTACCACTGCACCACCATCTCAACCTTCCCTCCCTATTCGCACATCTCAACGCCGACCTCCACCTGAACCAGAACCGATCCCATCACCAACCAACTCCAACCCGTTCACCTTGCCGCTTCATGCCGGTGAACCCGACGCCCTATCCTCACCATCTCCTGTTTCAACCACCACCCCTGCAGCTCCACCACCAGAAGCCTCACGCCGATCTGACCGTGCCCGTAACCCACCTTCTAACCTCAAAGACTACCACACCAATCACTCCATTTTGCTTGGCTCAGACATCGGTCTCTCCTCCACGTCTGGCACTCGCTATCCCCTACAGAGCCCTTGAGGATAACCGCACATGGTCCATGGTATCCCTGCCTTCTGGTCATCGTCCTATTGGCTGTAAATGGGTTTTCAAAATCAAATACCATGCTGACGGCACCATTGAGCGCTATAAAGCTCGACTTGTTGCCAAGGGATTCACTCAACGCGAAGGTATTGATTATAAAGATATTTTTGCGCCTGTTGCGAAATTGGTTACTGTCCGTTGTTTATTAGCTGTTGCTGCAGTACGTGTTTGGCCTTTGCATCAAATGGATGTCCAAAATGCCTTCCTACATGGCCACCTTACTGAGGAGGTGTATATGCTGCCTCCTCCTGGTTTTTGTCGACAGGGGGAGAACATGGTGTGTCGACTTCACAAGTCCCTATATGGTCTTAAACAGGCATCTCGTAGTTGGTTTCAGCGTTTCCATTCTGCCATCCAAGAAATTGGTTTTCAGCAATCTCATGCTGATTATTCTCTGTTTACACAAGTTCATGGGAATTCTATTACTGTGATATTGTTGTATGTTGATGACATGGTTATAACAGGGAACAATGAGAAGGCAATTGATGATCTCAAGAAGTTCCTTAACAGCTGCTTTAAGATTAAAGATCTTGGACCCCTCAAGTACTTTCTTGGCATAGAAGTCGCACGCTCCAAGGATGGAATTGCAATTTGTCAACGTAAGTACACATTGGATATATTGGAGGAGGCCGGATTACTTGGTGTAAAACCTACCAAGGTACCTATGGAGCCTGACTTGGTGTTAACTGAGAAAGGGAGTGACGCCCTCAAAGATCCTTCCCAGTATAGAAGACTGATTGGGAAGCTGATTTACCTCACAATCACTAGACCAGACATTACGTATGCCGTGAACACATTTAGTCAATTTATGCAGGAGCCTAAGGTACATCATCTTAAAATGGCACATCGACTTCTCCAATACCTTAAGGCTGTCCCTGGACAAGGCTTATTATTCCCTTCAGATAGTTCACATCAGTTGGCAGCCTATTGCGATGCAGACTGGGCAAGGTGCCCCATTACACGAAGATCAGTAACATGGTACTGTATTTTTCTTGGCAAGTCACTTGTTTCGTGGAAGAGCAAGAAGCAAGTCACAGTTTCAAGATCATCTGCTGAGGCCGAATACCGTTCTATGGCAGCAACTACTTGTGAACTCAGTTGGCTAAGATACTTGTTGAAAGACTTGCAGGTACAACATCCTGAGGCAACAAAGTTATTCTGTGACAACCAAGCGGCCTTACACATTGCAGCAAATCCAGTGTACCATGAGCGAACAAAGCACATTGAGTTAGACTGTCATACGGTTCGTGAGAGAATTCAAAAGGGTGAAGTTAAGACTGCTTATGTGCCAACTGGAAATCAGGTTGCAGACTTGTTCACTAAACCTTTGCGCGCACCAGCCTTCCACGCACACCTTAGCAAGTTAGGTGTGATTGACATACACACTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

615

Amino Acids

69.98

Weight (kDa)

9.44

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 152 - 201 2.2e-12 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 200 - 268 1.7e-12 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 546, 908
Acc36I ACCTGC 1 cut(s) 1567
Acc65I GGTACC 1 cut(s) 1108
AccB1I GGYRCC 3 cut(s) 479, 1108, 1398
AccI GTMKAC 2 cut(s) 709, 733
AccII CGCG 2 cut(s) 531, 1782
AciI CCGC 4 cut(s) 10, 169, 394, 1622
AclWI GGATC 2 cut(s) 126, 1157
AcoI YGGCCR 1 cut(s) 661
AcsI RAATTY 2 cut(s) 865, 1704
AcuI CTGAAG 1 cut(s) 1332
AcyI GRCGYC 3 cut(s) 19, 191, 1152
AfaI GTAC 8 cut(s) 612, 995, 1055, 1110, 1275, 1430, 1581, 1652
AfeI AGCGCT 1 cut(s) 491
AfiI CCNNNNNNNGG 6 cut(s) 15, 37, 673, 698, 1331, 1522
AflII CTTAAG 1 cut(s) 1313
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 5 cut(s) 218, 457, 1491, 1567, 1709
AjiI CACGTC 1 cut(s) 353
AjnI CCWGG 3 cut(s) 36, 697, 1324
AluBI AGCT 5 cut(s) 235, 500, 599, 960, 1195
AluI AGCT 5 cut(s) 235, 500, 599, 960, 1195
Alw26I GTCTC 2 cut(s) 29, 346
AlwI GGATC 2 cut(s) 126, 1157
Aor51HI AGCGCT 1 cut(s) 491
AoxI GGCC 5 cut(s) 620, 661, 1077, 1506, 1623
ApeKI GCWGC 7 cut(s) 232, 605, 688, 960, 1370, 1526, 1637
ApoI RAATTY 2 cut(s) 865, 1704
Asp718I GGTACC 1 cut(s) 1108
AspLEI GCGC 4 cut(s) 492, 562, 1782, 1784
AspS9I GGNCC 2 cut(s) 402, 983
AsuHPI GGTGA 5 cut(s) 131, 153, 193, 194, 1727
AvaII GGWCC 2 cut(s) 402, 983
AxyI CCTNAGG 2 cut(s) 1269, 1590
BaeGI GKGCMC 2 cut(s) 273, 1403
BaeI ACNNNNGTAYC 2 cut(s) 1092, 1125
BalI TGGCCA 1 cut(s) 663
BanI GGYRCC 3 cut(s) 479, 1108, 1398
BanII GRGCYC 2 cut(s) 8, 382
BarI GAAGNNNNNNTAC 4 cut(s) 267, 299, 1184, 1216
BbsI GAAGAC 1 cut(s) 1186
BbvCI CCTCAGC 1 cut(s) 1503
BbvI GCAGC 7 cut(s) 244, 592, 675, 947, 1382, 1538, 1649
BccI CCATC 6 cut(s) 54, 78, 144, 213, 809, 1022
BceAI ACGGC 2 cut(s) 493, 1220
BcgI CGANNNNNNTGC 2 cut(s) 994, 1028
BciT130I CCWGG 3 cut(s) 38, 699, 1326
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 29, 346
BfaI CTAG 1 cut(s) 1215
BfmI CTRYAG 3 cut(s) 230, 373, 606
BfoI RGCGCY 1 cut(s) 493
BfrI CTTAAG 1 cut(s) 1313
BfuAI ACCTGC 1 cut(s) 1567
BfuI GTATCC 1 cut(s) 421
BglII AGATCT 1 cut(s) 976
BisI GCNGC 9 cut(s) 169, 233, 606, 689, 961, 1371, 1527, 1623, 1638
BlsI GCNGC 9 cut(s) 170, 234, 607, 690, 962, 1372, 1528, 1624, 1639
BmcAI AGTACT 1 cut(s) 995
Bme1390I CCNGG 3 cut(s) 38, 699, 1326
Bme18I GGWCC 2 cut(s) 402, 983
BmgBI CACGTC 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 402, 983
BmiI GGNNCC 7 cut(s) 7, 481, 985, 1110, 1119, 1266, 1400
BmrFI CCNGG 3 cut(s) 38, 699, 1326
BmrI ACTGGG 2 cut(s) 1165, 1399
BmsI GCATC 3 cut(s) 637, 776, 1372
BmuI ACTGGG 2 cut(s) 1165, 1399
BoxI GACNNNNGTC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 1186
Bpu10I CCTNAGC 2 cut(s) 1503, 1805
BpuEI CTTGAG 3 cut(s) 404, 926, 974
BsaAI YACGTR 2 cut(s) 614, 1230
BsaHI GRCGYC 3 cut(s) 19, 191, 1152
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 5 cut(s) 405, 513, 1023, 1104, 1324
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 37, 673, 698, 1331, 1522
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 4 cut(s) 1171, 1394, 1646, 1747
Bse21I CCTNAGG 2 cut(s) 1269, 1590
Bse3DI GCAATG 1 cut(s) 1632
BseBI CCWGG 3 cut(s) 38, 699, 1326
BseDI CCNNGG 5 cut(s) 405, 513, 1023, 1104, 1324
BseGI GGATG 4 cut(s) 643, 801, 1033, 1585
BseLI CCNNNNNNNGG 6 cut(s) 15, 37, 673, 698, 1331, 1522
BseMI GCAATG 1 cut(s) 1632
BseMII CTCAG 6 cut(s) 344, 663, 1128, 1494, 1558, 1581
BseNI ACTGG 4 cut(s) 1171, 1394, 1646, 1747
BsePI GCGCGC 1 cut(s) 1780
BseRI GAGGAG 4 cut(s) 336, 684, 689, 1088
BseSI GKGCMC 2 cut(s) 273, 1403
BseXI GCAGC 7 cut(s) 244, 592, 675, 947, 1382, 1538, 1649
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 2 cut(s) 531, 1782
BshFI GGCC 5 cut(s) 622, 663, 1079, 1508, 1625
BshNI GGYRCC 3 cut(s) 479, 1108, 1398
BsiSI CCGG 2 cut(s) 179, 1080
BslFI GGGAC 2 cut(s) 730, 1307
BslI CCNNNNNNNGG 6 cut(s) 15, 37, 673, 698, 1331, 1522
BsmAI GTCTC 2 cut(s) 29, 346
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 730, 1307
BsnI GGCC 5 cut(s) 622, 663, 1079, 1508, 1625
Bso31I GGTCTC 1 cut(s) 346
Bsp1286I GDGCHC 4 cut(s) 8, 273, 382, 1403
Bsp143I GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 4 cut(s) 10, 169, 394, 1622
BspANI GGCC 5 cut(s) 622, 663, 1079, 1508, 1625
BspCNI CTCAG 6 cut(s) 343, 664, 1129, 1495, 1557, 1582
BspFNI CGCG 2 cut(s) 531, 1782
BspLI GGNNCC 7 cut(s) 7, 481, 985, 1110, 1119, 1266, 1400
BspMAI CTGCAG 2 cut(s) 234, 610
BspMI ACCTGC 1 cut(s) 1567
BspPI GGATC 2 cut(s) 126, 1157
BspQI GCTCTTC 1 cut(s) 1460
BspT107I GGYRCC 3 cut(s) 479, 1108, 1398
BspTI CTTAAG 1 cut(s) 1313
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 1632
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 4 cut(s) 1171, 1394, 1646, 1747
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 5 cut(s) 405, 513, 1023, 1104, 1324
BssHII GCGCGC 1 cut(s) 1780
BssMI GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
BssNI GRCGYC 3 cut(s) 19, 191, 1152
BssT1I CCWWGG 4 cut(s) 405, 513, 1023, 1104
Bst2UI CCWGG 3 cut(s) 38, 699, 1326
Bst4CI ACNGT 8 cut(s) 268, 583, 877, 1433, 1486, 1517, 1685, 1693
Bst6I CTCTTC 1 cut(s) 1460
BstACI GRCGYC 3 cut(s) 19, 191, 1152
BstAFI CTTAAG 1 cut(s) 1313
BstBAI YACGTR 2 cut(s) 614, 1230
BstC8I GCNNGC 2 cut(s) 1018, 1782
BstDEI CTNAG 9 cut(s) 330, 672, 1137, 1269, 1503, 1544, 1553, 1590, 1805
BstDSI CCRYGG 1 cut(s) 405
BstENI CCTNNNNNAGG 3 cut(s) 35, 671, 1329
BstF5I GGATG 4 cut(s) 643, 801, 1033, 1585
BstFNI CGCG 2 cut(s) 531, 1782
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 4 cut(s) 492, 562, 1782, 1784
BstKTI GATC 7 cut(s) 134, 262, 940, 979, 1165, 1418, 1496
BstMAI GTCTC 2 cut(s) 29, 346
BstMBI GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
BstMWI GCNNNNNNNGC 5 cut(s) 566, 605, 1391, 1666, 1796
BstNI CCWGG 3 cut(s) 38, 699, 1326
BstPAI GACNNNNGTC 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 36, 697, 1324
BstSFI CTRYAG 3 cut(s) 230, 373, 606
BstSLI GKGCMC 2 cut(s) 273, 1403
BstSNI TACGTA 1 cut(s) 1230
BstUI CGCG 2 cut(s) 531, 1782
BstV1I GCAGC 7 cut(s) 244, 592, 675, 947, 1382, 1538, 1649
BstV2I GAAGAC 1 cut(s) 1186
BstX2I RGATCY 2 cut(s) 976, 1162
BstXI CCANNNNNNTGG 1 cut(s) 812
BstYI RGATCY 2 cut(s) 976, 1162
Bsu36I CCTNAGG 2 cut(s) 1269, 1590
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 5 cut(s) 622, 663, 1079, 1508, 1625
BtgI CCRYGG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 1395
BtrI CACGTC 1 cut(s) 353
BtsCI GGATG 4 cut(s) 643, 801, 1033, 1585
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 1653
BveI ACCTGC 1 cut(s) 1567
Cac8I GCNNGC 2 cut(s) 1018, 1782
CfoI GCGC 4 cut(s) 492, 562, 1782, 1784
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 402, 983
CseI GACGC 3 cut(s) 8, 199, 1160
Csp6I GTAC 8 cut(s) 611, 994, 1054, 1109, 1274, 1429, 1580, 1651
CviQI GTAC 8 cut(s) 611, 994, 1054, 1109, 1274, 1429, 1580, 1651
DdeI CTNAG 9 cut(s) 330, 672, 1137, 1269, 1503, 1544, 1553, 1590, 1805
DpnI GATC 7 cut(s) 133, 261, 939, 978, 1164, 1417, 1495
DpnII GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 1460
EarI CTCTTC 1 cut(s) 1460
Eco105I TACGTA 1 cut(s) 1230
Eco130I CCWWGG 4 cut(s) 405, 513, 1023, 1104
Eco24I GRGCYC 2 cut(s) 8, 382
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 402, 983
Eco47III AGCGCT 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 1332
Eco81I CCTNAGG 2 cut(s) 1269, 1590
EcoNI CCTNNNNNAGG 3 cut(s) 35, 671, 1329
EcoRI GAATTC 2 cut(s) 865, 1704
EcoRII CCWGG 3 cut(s) 36, 697, 1324
EcoT14I CCWWGG 4 cut(s) 405, 513, 1023, 1104
EcoT38I GRGCYC 2 cut(s) 8, 382
ErhI CCWWGG 4 cut(s) 405, 513, 1023, 1104
Esp3I CGTCTC 1 cut(s) 29
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 2 cut(s) 730, 1307
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 2 cut(s) 709, 733
Fnu4HI GCNGC 9 cut(s) 169, 233, 606, 689, 961, 1371, 1527, 1623, 1638
FokI GGATG 4 cut(s) 650, 788, 1040, 1572
FriOI GRGCYC 2 cut(s) 8, 382
Fsp4HI GCNGC 9 cut(s) 169, 233, 606, 689, 961, 1371, 1527, 1623, 1638
FspBI CTAG 1 cut(s) 1215
GlaI GCGC 4 cut(s) 491, 561, 1781, 1783
GluI GCNGC 9 cut(s) 169, 233, 606, 689, 961, 1371, 1527, 1623, 1638
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 5 cut(s) 622, 663, 1079, 1508, 1625
HapII CCGG 2 cut(s) 179, 1080
HgaI GACGC 3 cut(s) 8, 199, 1160
HhaI GCGC 4 cut(s) 492, 562, 1782, 1784
Hin1I GRCGYC 3 cut(s) 19, 191, 1152
Hin6I GCGC 4 cut(s) 490, 560, 1780, 1782
HinP1I GCGC 4 cut(s) 490, 560, 1780, 1782
HincII GTYRAC 4 cut(s) 710, 734, 1046, 1134
HindII GTYRAC 4 cut(s) 710, 734, 1046, 1134
HinfI GANTC 1 cut(s) 519
HpaI GTTAAC 1 cut(s) 1134
HpaII CCGG 2 cut(s) 179, 1080
HphI GGTGA 5 cut(s) 131, 153, 193, 194, 1727
Hpy188I TCNGA 4 cut(s) 53, 264, 333, 1351
Hpy188III TCNNGA 4 cut(s) 943, 1491, 1589, 1697
Hpy99I CGWCG 2 cut(s) 24, 193
HpyAV CCTTC 9 cut(s) 89, 293, 429, 527, 661, 919, 1176, 1356, 1801
HpyCH4III ACNGT 8 cut(s) 268, 583, 877, 1433, 1486, 1517, 1685, 1693
HpyCH4IV ACGT 4 cut(s) 352, 613, 1048, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 566, 605, 1391, 1666, 1796
HpyF3I CTNAG 9 cut(s) 330, 672, 1137, 1269, 1503, 1544, 1553, 1590, 1805
HpySE526I ACGT 4 cut(s) 352, 613, 1048, 1229
Hsp92I GRCGYC 3 cut(s) 19, 191, 1152
HspAI GCGC 4 cut(s) 490, 560, 1780, 1782
KpnI GGTACC 1 cut(s) 1112
KspAI GTTAAC 1 cut(s) 1134
Kzo9I GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
LguI GCTCTTC 1 cut(s) 1460
LmnI GCTCC 5 cut(s) 11, 240, 1025, 1117, 1264
Lsp1109I GCAGC 7 cut(s) 244, 592, 675, 947, 1382, 1538, 1649
LweI GCATC 3 cut(s) 637, 776, 1372
MaeI CTAG 1 cut(s) 1215
MaeII ACGT 4 cut(s) 352, 613, 1048, 1229
MaeIII GTNAC 7 cut(s) 274, 577, 1148, 1420, 1449, 1480, 1610
MalI GATC 7 cut(s) 133, 261, 939, 978, 1164, 1417, 1495
MboI GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
MboII GAAGA 3 cut(s) 1191, 1425, 1477
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 2 cut(s) 976, 1162
MhlI GDGCHC 4 cut(s) 8, 273, 382, 1403
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 8 cut(s) 572, 810, 865, 930, 1032, 1038, 1253, 1704
MluNI TGGCCA 1 cut(s) 663
MmeI TCCRAC 1 cut(s) 176
Mox20I TGGCCA 1 cut(s) 663
MscI TGGCCA 1 cut(s) 663
MseI TTAA 8 cut(s) 759, 954, 966, 972, 1133, 1284, 1314, 1722
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 663
MspA1I CMGCKG 2 cut(s) 12, 960
MspCI CTTAAG 1 cut(s) 1313
MspI CCGG 2 cut(s) 179, 1080
MspR9I CCNGG 3 cut(s) 38, 699, 1326
MunI CAATTG 1 cut(s) 930
MvaI CCWGG 3 cut(s) 38, 699, 1326
MvnI CGCG 2 cut(s) 531, 1782
MwoI GCNNNNNNNGC 5 cut(s) 566, 605, 1391, 1666, 1796
NcoI CCATGG 1 cut(s) 405
NdeII GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
NlaIV GGNNCC 7 cut(s) 7, 481, 985, 1110, 1119, 1266, 1400
NmuCI GTSAC 4 cut(s) 1148, 1449, 1480, 1610
PauI GCGCGC 1 cut(s) 1780
PciSI GCTCTTC 1 cut(s) 1460
PfeI GAWTC 1 cut(s) 519
PkrI GCNGC 9 cut(s) 170, 234, 607, 690, 962, 1372, 1528, 1624, 1639
Ppu21I YACGTR 2 cut(s) 614, 1230
PshAI GACNNNNGTC 1 cut(s) 338
PsiI TTATAA 2 cut(s) 546, 908
Psp6I CCWGG 3 cut(s) 36, 697, 1324
PspGI CCWGG 3 cut(s) 36, 697, 1324
PspN4I GGNNCC 7 cut(s) 7, 481, 985, 1110, 1119, 1266, 1400
PspPI GGNCC 2 cut(s) 402, 983
PstI CTGCAG 2 cut(s) 234, 610
PsuI RGATCY 2 cut(s) 976, 1162
PteI GCGCGC 1 cut(s) 1780
PvuII CAGCTG 1 cut(s) 960
RsaI GTAC 8 cut(s) 612, 995, 1055, 1110, 1275, 1430, 1581, 1652
RsaNI GTAC 8 cut(s) 611, 994, 1054, 1109, 1274, 1429, 1580, 1651
RseI CAYNNNNRTG 1 cut(s) 179
SalI GTCGAC 2 cut(s) 708, 732
SapI GCTCTTC 1 cut(s) 1460
SaqAI TTAA 8 cut(s) 759, 954, 966, 972, 1133, 1284, 1314, 1722
SatI GCNGC 9 cut(s) 169, 233, 606, 689, 961, 1371, 1527, 1623, 1638
Sau3AI GATC 7 cut(s) 131, 259, 937, 976, 1162, 1415, 1493
Sau96I GGNCC 2 cut(s) 402, 983
ScaI AGTACT 1 cut(s) 995
ScrFI CCNGG 3 cut(s) 38, 699, 1326
SduI GDGCHC 4 cut(s) 8, 273, 382, 1403
SfaNI GCATC 3 cut(s) 637, 776, 1372
SfcI CTRYAG 3 cut(s) 230, 373, 606
SinI GGWCC 2 cut(s) 402, 983
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 4 cut(s) 383, 941, 989, 1313
SmoI CTYRAG 4 cut(s) 383, 941, 989, 1313
SnaBI TACGTA 1 cut(s) 1230
Sse9I AATT 8 cut(s) 572, 810, 865, 930, 1032, 1038, 1253, 1704
SsiI CCGC 4 cut(s) 10, 169, 394, 1622
SspMI CTAG 1 cut(s) 1215
StyD4I CCNGG 3 cut(s) 36, 697, 1324
StyI CCWWGG 4 cut(s) 405, 513, 1023, 1104
TaaI ACNGT 8 cut(s) 268, 583, 877, 1433, 1486, 1517, 1685, 1693
TaiI ACGT 4 cut(s) 355, 616, 1051, 1232
TaqI TCGA 4 cut(s) 502, 709, 733, 1297
TaqII GACCGA 1 cut(s) 328
TasI AATT 8 cut(s) 572, 810, 865, 930, 1032, 1038, 1253, 1704
TatI WGTACW 2 cut(s) 993, 1053
TauI GCSGC 2 cut(s) 171, 1625
TfiI GAWTC 1 cut(s) 519
Tru1I TTAA 8 cut(s) 759, 954, 966, 972, 1133, 1284, 1314, 1722
Tru9I TTAA 8 cut(s) 759, 954, 966, 972, 1133, 1284, 1314, 1722
TscAI CASTG 2 cut(s) 66, 1653
TseFI GTSAC 4 cut(s) 1148, 1449, 1480, 1610
TseI GCWGC 7 cut(s) 232, 605, 688, 960, 1370, 1526, 1637
Tsp45I GTSAC 4 cut(s) 1148, 1449, 1480, 1610
TspDTI ATGAA 2 cut(s) 163, 848
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 66, 1653
Vha464I CTTAAG 1 cut(s) 1313
VpaK11BI GGWCC 2 cut(s) 402, 983
XagI CCTNNNNNAGG 3 cut(s) 35, 671, 1329
XapI RAATTY 2 cut(s) 865, 1704
XcmI CCANNNNNNNNNTGG 1 cut(s) 1111
XmiI GTMKAC 2 cut(s) 709, 733
XspI CTAG 1 cut(s) 1215
ZrmI AGTACT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.