Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 2 - 165 | 2.7e-47 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 163, 485 |
| AclWI | GGATC | 4 cut(s) | 140, 670, 915, 928 |
| AcoI | YGGCCR | 1 cut(s) | 444 |
| AcsI | RAATTY | 1 cut(s) | 742 |
| AcuI | CTGAAG | 1 cut(s) | 917 |
| AfaI | GTAC | 3 cut(s) | 7, 505, 778 |
| AflII | CTTAAG | 1 cut(s) | 419 |
| AgsI | TTSAA | 3 cut(s) | 236, 294, 356 |
| AhlI | ACTAGT | 1 cut(s) | 296 |
| AjiI | CACGTC | 1 cut(s) | 450 |
| AjnI | CCWGG | 1 cut(s) | 429 |
| AluBI | AGCT | 7 cut(s) | 118, 220, 304, 361, 851, 863, 950 |
| AluI | AGCT | 7 cut(s) | 118, 220, 304, 361, 851, 863, 950 |
| Alw26I | GTCTC | 1 cut(s) | 456 |
| AlwI | GGATC | 4 cut(s) | 140, 670, 915, 928 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 728 |
| AoxI | GGCC | 3 cut(s) | 47, 444, 533 |
| ApeKI | GCWGC | 1 cut(s) | 930 |
| ApoI | RAATTY | 1 cut(s) | 742 |
| AspLEI | GCGC | 1 cut(s) | 642 |
| AsuHPI | GGTGA | 1 cut(s) | 101 |
| BalI | TGGCCA | 1 cut(s) | 446 |
| BamHI | GGATCC | 1 cut(s) | 920 |
| BbvI | GCAGC | 1 cut(s) | 942 |
| BccI | CCATC | 1 cut(s) | 436 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 532, 566 |
| BciT130I | CCWGG | 1 cut(s) | 431 |
| BcoDI | GTCTC | 1 cut(s) | 456 |
| BcuI | ACTAGT | 1 cut(s) | 296 |
| BfaI | CTAG | 5 cut(s) | 297, 489, 840, 927, 947 |
| BfrI | CTTAAG | 1 cut(s) | 419 |
| BisI | GCNGC | 1 cut(s) | 931 |
| BlsI | GCNGC | 1 cut(s) | 932 |
| BmcAI | AGTACT | 1 cut(s) | 505 |
| Bme1390I | CCNGG | 1 cut(s) | 431 |
| BmgBI | CACGTC | 1 cut(s) | 450 |
| BmiI | GGNNCC | 2 cut(s) | 679, 922 |
| BmrFI | CCNGG | 1 cut(s) | 431 |
| BmsI | GCATC | 2 cut(s) | 142, 715 |
| BsaAI | YACGTR | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 2 cut(s) | 430, 615 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 490, 520 |
| Bse1I | ACTGG | 1 cut(s) | 501 |
| Bse3DI | GCAATG | 1 cut(s) | 265 |
| BseBI | CCWGG | 1 cut(s) | 431 |
| BseDI | CCNNGG | 2 cut(s) | 430, 615 |
| BseGI | GGATG | 2 cut(s) | 70, 577 |
| BseMI | GCAATG | 1 cut(s) | 265 |
| BseNI | ACTGG | 1 cut(s) | 501 |
| BseRI | GAGGAG | 2 cut(s) | 116, 537 |
| BseXI | GCAGC | 1 cut(s) | 942 |
| BshFI | GGCC | 3 cut(s) | 49, 446, 535 |
| BsmAI | GTCTC | 1 cut(s) | 456 |
| BsmBI | CGTCTC | 1 cut(s) | 456 |
| BsmI | GAATGC | 1 cut(s) | 642 |
| BsnI | GGCC | 3 cut(s) | 49, 446, 535 |
| Bsp143I | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| Bsp19I | CCATGG | 1 cut(s) | 615 |
| BspANI | GGCC | 3 cut(s) | 49, 446, 535 |
| BspHI | TCATGA | 1 cut(s) | 142 |
| BspLI | GGNNCC | 2 cut(s) | 679, 922 |
| BspPI | GGATC | 4 cut(s) | 140, 670, 915, 928 |
| BspQI | GCTCTTC | 1 cut(s) | 351 |
| BspTI | CTTAAG | 1 cut(s) | 419 |
| BsrDI | GCAATG | 1 cut(s) | 265 |
| BsrI | ACTGG | 1 cut(s) | 501 |
| BssECI | CCNNGG | 2 cut(s) | 430, 615 |
| BssMI | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| BssNAI | GTATAC | 1 cut(s) | 486 |
| BssT1I | CCWWGG | 1 cut(s) | 615 |
| Bst1107I | GTATAC | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 1 cut(s) | 431 |
| Bst4CI | ACNGT | 2 cut(s) | 10, 826 |
| Bst6I | CTCTTC | 3 cut(s) | 93, 351, 387 |
| BstAFI | CTTAAG | 1 cut(s) | 419 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 212 |
| BstBAI | YACGTR | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 4 cut(s) | 494, 537, 541, 606 |
| BstDEI | CTNAG | 1 cut(s) | 221 |
| BstDSI | CCRYGG | 1 cut(s) | 615 |
| BstF5I | GGATG | 2 cut(s) | 70, 577 |
| BstHHI | GCGC | 1 cut(s) | 642 |
| BstKTI | GATC | 5 cut(s) | 94, 148, 665, 754, 923 |
| BstMAI | GTCTC | 1 cut(s) | 456 |
| BstMBI | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 212, 310, 648, 734, 875 |
| BstNI | CCWGG | 1 cut(s) | 431 |
| BstNSI | RCATGY | 1 cut(s) | 608 |
| BstSCI | CCNGG | 1 cut(s) | 429 |
| BstV1I | GCAGC | 1 cut(s) | 942 |
| BstX2I | RGATCY | 2 cut(s) | 662, 920 |
| BstYI | RGATCY | 2 cut(s) | 662, 920 |
| BstZ17I | GTATAC | 1 cut(s) | 486 |
| BsuRI | GGCC | 3 cut(s) | 49, 446, 535 |
| BtgI | CCRYGG | 1 cut(s) | 615 |
| BtrI | CACGTC | 1 cut(s) | 450 |
| BtsCI | GGATG | 2 cut(s) | 70, 577 |
| BtsI | GCAGTG | 3 cut(s) | 39, 162, 873 |
| BtsIMutI | CAGTG | 3 cut(s) | 39, 162, 873 |
| Cac8I | GCNNGC | 4 cut(s) | 494, 537, 541, 606 |
| CaiI | CAGNNNCTG | 1 cut(s) | 728 |
| CciI | TCATGA | 1 cut(s) | 142 |
| CfoI | GCGC | 1 cut(s) | 642 |
| Csp6I | GTAC | 3 cut(s) | 6, 504, 777 |
| CviAII | CATG | 7 cut(s) | 86, 143, 207, 601, 605, 616, 712 |
| CviQI | GTAC | 3 cut(s) | 6, 504, 777 |
| DdeI | CTNAG | 1 cut(s) | 221 |
| DpnI | GATC | 5 cut(s) | 93, 147, 664, 753, 922 |
| DpnII | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| EaeI | YGGCCR | 1 cut(s) | 444 |
| Eam1104I | CTCTTC | 3 cut(s) | 93, 351, 387 |
| EarI | CTCTTC | 3 cut(s) | 93, 351, 387 |
| Eco130I | CCWWGG | 1 cut(s) | 615 |
| Eco147I | AGGCCT | 1 cut(s) | 535 |
| Eco32I | GATATC | 1 cut(s) | 529 |
| Eco57I | CTGAAG | 1 cut(s) | 917 |
| EcoRII | CCWGG | 1 cut(s) | 429 |
| EcoRV | GATATC | 1 cut(s) | 529 |
| EcoT14I | CCWWGG | 1 cut(s) | 615 |
| EcoT22I | ATGCAT | 1 cut(s) | 606 |
| ErhI | CCWWGG | 1 cut(s) | 615 |
| Esp3I | CGTCTC | 1 cut(s) | 456 |
| FaeI | CATG | 7 cut(s) | 89, 146, 210, 604, 608, 619, 715 |
| FatI | CATG | 7 cut(s) | 85, 142, 206, 600, 604, 615, 711 |
| FblI | GTMKAC | 2 cut(s) | 163, 485 |
| Fnu4HI | GCNGC | 1 cut(s) | 931 |
| FokI | GGATG | 2 cut(s) | 77, 584 |
| Fsp4HI | GCNGC | 1 cut(s) | 931 |
| FspBI | CTAG | 5 cut(s) | 297, 489, 840, 927, 947 |
| GlaI | GCGC | 1 cut(s) | 641 |
| GluI | GCNGC | 1 cut(s) | 931 |
| HaeIII | GGCC | 3 cut(s) | 49, 446, 535 |
| HhaI | GCGC | 1 cut(s) | 642 |
| Hin1II | CATG | 7 cut(s) | 89, 146, 210, 604, 608, 619, 715 |
| Hin6I | GCGC | 1 cut(s) | 640 |
| HinP1I | GCGC | 1 cut(s) | 640 |
| HindIII | AAGCTT | 3 cut(s) | 116, 218, 302 |
| HinfI | GANTC | 3 cut(s) | 266, 415, 592 |
| HphI | GGTGA | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 4 cut(s) | 37, 164, 486, 884 |
| Hpy188I | TCNGA | 2 cut(s) | 285, 913 |
| Hpy188III | TCNNGA | 5 cut(s) | 95, 143, 149, 551, 749 |
| Hpy8I | GTNNAC | 4 cut(s) | 37, 164, 486, 884 |
| HpyAV | CCTTC | 1 cut(s) | 892 |
| HpyCH4III | ACNGT | 2 cut(s) | 10, 826 |
| HpyCH4IV | ACGT | 2 cut(s) | 202, 449 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 155, 206, 604 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 212, 310, 648, 734, 875 |
| HpyF3I | CTNAG | 1 cut(s) | 221 |
| HpySE526I | ACGT | 2 cut(s) | 202, 449 |
| Hsp92II | CATG | 7 cut(s) | 89, 146, 210, 604, 608, 619, 715 |
| HspAI | GCGC | 1 cut(s) | 640 |
| Kzo9I | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| LguI | GCTCTTC | 1 cut(s) | 351 |
| LmnI | GCTCC | 2 cut(s) | 255, 613 |
| LpnPI | CCDG | 9 cut(s) | 162, 416, 443, 514, 517, 549, 553, 723, 753 |
| Lsp1109I | GCAGC | 1 cut(s) | 942 |
| LweI | GCATC | 2 cut(s) | 142, 715 |
| MaeI | CTAG | 5 cut(s) | 297, 489, 840, 927, 947 |
| MaeII | ACGT | 2 cut(s) | 202, 449 |
| MaeIII | GTNAC | 2 cut(s) | 337, 791 |
| MalI | GATC | 5 cut(s) | 93, 147, 664, 753, 922 |
| MboI | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| MboII | GAAGA | 6 cut(s) | 110, 248, 368, 374, 617, 638 |
| MflI | RGATCY | 2 cut(s) | 662, 920 |
| MlsI | TGGCCA | 1 cut(s) | 446 |
| MluCI | AATT | 3 cut(s) | 177, 596, 742 |
| MluNI | TGGCCA | 1 cut(s) | 446 |
| MlyI | GAGTC | 1 cut(s) | 601 |
| MmeI | TCCRAC | 2 cut(s) | 549, 785 |
| MnlI | CCTC | 8 cut(s) | 6, 60, 94, 97, 132, 280, 558, 668 |
| Mox20I | TGGCCA | 1 cut(s) | 446 |
| Mph1103I | ATGCAT | 1 cut(s) | 606 |
| MscI | TGGCCA | 1 cut(s) | 446 |
| MseI | TTAA | 4 cut(s) | 188, 363, 402, 420 |
| Msp20I | TGGCCA | 1 cut(s) | 446 |
| MspCI | CTTAAG | 1 cut(s) | 419 |
| MspR9I | CCNGG | 1 cut(s) | 431 |
| Mva1269I | GAATGC | 1 cut(s) | 642 |
| MvaI | CCWGG | 1 cut(s) | 431 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 212, 310, 648, 734, 875 |
| NcoI | CCATGG | 1 cut(s) | 615 |
| NdeII | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| NlaIII | CATG | 7 cut(s) | 89, 146, 210, 604, 608, 619, 715 |
| NlaIV | GGNNCC | 2 cut(s) | 679, 922 |
| NsiI | ATGCAT | 1 cut(s) | 606 |
| NspI | RCATGY | 1 cut(s) | 608 |
| PaeI | GCATGC | 1 cut(s) | 608 |
| PagI | TCATGA | 1 cut(s) | 142 |
| PceI | AGGCCT | 1 cut(s) | 535 |
| PciSI | GCTCTTC | 1 cut(s) | 351 |
| PctI | GAATGC | 1 cut(s) | 642 |
| PfeI | GAWTC | 2 cut(s) | 266, 415 |
| PkrI | GCNGC | 1 cut(s) | 932 |
| PleI | GAGTC | 1 cut(s) | 600 |
| PpsI | GAGTC | 1 cut(s) | 600 |
| Ppu21I | YACGTR | 1 cut(s) | 203 |
| Psp6I | CCWGG | 1 cut(s) | 429 |
| PspGI | CCWGG | 1 cut(s) | 429 |
| PspN4I | GGNNCC | 2 cut(s) | 679, 922 |
| PstNI | CAGNNNCTG | 1 cut(s) | 728 |
| PsuI | RGATCY | 2 cut(s) | 662, 920 |
| RsaI | GTAC | 3 cut(s) | 7, 505, 778 |
| RsaNI | GTAC | 3 cut(s) | 6, 504, 777 |
| SapI | GCTCTTC | 1 cut(s) | 351 |
| SaqAI | TTAA | 4 cut(s) | 188, 363, 402, 420 |
| SatI | GCNGC | 1 cut(s) | 931 |
| Sau3AI | GATC | 5 cut(s) | 91, 145, 662, 751, 920 |
| ScaI | AGTACT | 1 cut(s) | 505 |
| SchI | GAGTC | 1 cut(s) | 601 |
| ScrFI | CCNGG | 1 cut(s) | 431 |
| SfaNI | GCATC | 2 cut(s) | 142, 715 |
| SmlI | CTYRAG | 1 cut(s) | 419 |
| SmoI | CTYRAG | 1 cut(s) | 419 |
| SpeI | ACTAGT | 1 cut(s) | 296 |
| SphI | GCATGC | 1 cut(s) | 608 |
| Sse9I | AATT | 3 cut(s) | 177, 596, 742 |
| SseBI | AGGCCT | 1 cut(s) | 535 |
| SspMI | CTAG | 5 cut(s) | 297, 489, 840, 927, 947 |
| StuI | AGGCCT | 1 cut(s) | 535 |
| StyD4I | CCNGG | 1 cut(s) | 429 |
| StyI | CCWWGG | 1 cut(s) | 615 |
| TaaI | ACNGT | 2 cut(s) | 10, 826 |
| TaiI | ACGT | 2 cut(s) | 205, 452 |
| TaqI | TCGA | 3 cut(s) | 96, 552, 859 |
| TasI | AATT | 3 cut(s) | 177, 596, 742 |
| TatI | WGTACW | 1 cut(s) | 503 |
| TfiI | GAWTC | 2 cut(s) | 266, 415 |
| Tru1I | TTAA | 4 cut(s) | 188, 363, 402, 420 |
| Tru9I | TTAA | 4 cut(s) | 188, 363, 402, 420 |
| TscAI | CASTG | 3 cut(s) | 39, 162, 880 |
| TseI | GCWGC | 1 cut(s) | 930 |
| TspDTI | ATGAA | 7 cut(s) | 128, 158, 374, 589, 617, 701, 751 |
| TspRI | CASTG | 3 cut(s) | 39, 162, 880 |
| Vha464I | CTTAAG | 1 cut(s) | 419 |
| XapI | RAATTY | 1 cut(s) | 742 |
| XceI | RCATGY | 1 cut(s) | 608 |
| XmiI | GTMKAC | 2 cut(s) | 163, 485 |
| XspI | CTAG | 5 cut(s) | 297, 489, 840, 927, 947 |
| ZrmI | AGTACT | 1 cut(s) | 505 |
| Zsp2I | ATGCAT | 1 cut(s) | 606 |