beta-galactosidase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 53 |
| Acc36I | ACCTGC | 1 cut(s) | 53 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1936 |
| AccI | GTMKAC | 2 cut(s) | 126, 619 |
| AccII | CGCG | 2 cut(s) | 1691, 1763 |
| AccIII | TCCGGA | 2 cut(s) | 1864, 2259 |
| AciI | CCGC | 4 cut(s) | 1483, 1689, 1761, 1763 |
| AclWI | GGATC | 9 cut(s) | 8, 21, 194, 1227, 1602, 2364, 2505, 2676, 2805 |
| AcoI | YGGCCR | 1 cut(s) | 1563 |
| AcsI | RAATTY | 4 cut(s) | 169, 1807, 1962, 2483 |
| AcuI | CTGAAG | 3 cut(s) | 348, 1331, 2337 |
| AfaI | GTAC | 8 cut(s) | 492, 556, 733, 1342, 1432, 1779, 1928, 2333 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 520, 535, 1529, 1561, 1936, 2002 |
| AflIII | ACRYGT | 1 cut(s) | 2735 |
| AgeI | ACCGGT | 1 cut(s) | 2432 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 969 |
| AjiI | CACGTC | 1 cut(s) | 2738 |
| AjnI | CCWGG | 3 cut(s) | 2215, 2652, 2664 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 855, 887, 2504, 2536 |
| AluBI | AGCT | 3 cut(s) | 77, 157, 1628 |
| AluI | AGCT | 3 cut(s) | 77, 157, 1628 |
| Alw21I | GWGCWC | 1 cut(s) | 948 |
| Alw26I | GTCTC | 4 cut(s) | 755, 956, 1401, 2077 |
| AlwI | GGATC | 9 cut(s) | 8, 21, 194, 1227, 1602, 2364, 2505, 2676, 2805 |
| Ama87I | CYCGRG | 2 cut(s) | 1083, 1493 |
| Aor13HI | TCCGGA | 2 cut(s) | 1864, 2259 |
| AoxI | GGCC | 4 cut(s) | 148, 1531, 1563, 1649 |
| ApeKI | GCWGC | 5 cut(s) | 74, 114, 154, 1634, 2809 |
| ApoI | RAATTY | 4 cut(s) | 169, 1807, 1962, 2483 |
| AseI | ATTAAT | 1 cut(s) | 2402 |
| AsiGI | ACCGGT | 1 cut(s) | 2432 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2516 |
| AspA2I | CCTAGG | 1 cut(s) | 1826 |
| AspLEI | GCGC | 1 cut(s) | 70 |
| AspS9I | GGNCC | 5 cut(s) | 148, 1421, 1649, 1686, 2133 |
| AsuC2I | CCSGG | 1 cut(s) | 1556 |
| AsuHPI | GGTGA | 7 cut(s) | 365, 1149, 1273, 1911, 1951, 2101, 2280 |
| AsuII | TTCGAA | 1 cut(s) | 1099 |
| AvaI | CYCGRG | 2 cut(s) | 1083, 1493 |
| AvaII | GGWCC | 3 cut(s) | 1421, 1686, 2133 |
| AvrII | CCTAGG | 1 cut(s) | 1826 |
| BaeGI | GKGCMC | 2 cut(s) | 771, 1042 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1910, 1943 |
| BalI | TGGCCA | 1 cut(s) | 1565 |
| BamHI | GGATCC | 1 cut(s) | 13 |
| BauI | CACGAG | 1 cut(s) | 2544 |
| BbsI | GAAGAC | 1 cut(s) | 1458 |
| Bbv12I | GWGCWC | 1 cut(s) | 948 |
| BbvI | GCAGC | 4 cut(s) | 86, 126, 166, 1646 |
| BccI | CCATC | 8 cut(s) | 84, 101, 392, 1114, 1147, 1263, 2123, 2543 |
| BceAI | ACGGC | 2 cut(s) | 964, 2350 |
| BciT130I | CCWGG | 3 cut(s) | 2217, 2654, 2666 |
| BclI | TGATCA | 2 cut(s) | 460, 1327 |
| BcnI | CCSGG | 1 cut(s) | 1556 |
| BcoDI | GTCTC | 4 cut(s) | 755, 956, 1401, 2077 |
| BfaI | CTAG | 7 cut(s) | 623, 1793, 1827, 2186, 2292, 2501, 2790 |
| BfmI | CTRYAG | 6 cut(s) | 72, 273, 518, 1378, 2272, 2338 |
| BfuAI | ACCTGC | 1 cut(s) | 53 |
| BglII | AGATCT | 2 cut(s) | 890, 2182 |
| BisI | GCNGC | 5 cut(s) | 75, 115, 155, 1635, 2810 |
| BlnI | CCTAGG | 1 cut(s) | 1826 |
| BlsI | GCNGC | 5 cut(s) | 76, 116, 156, 1636, 2811 |
| Bme1390I | CCNGG | 4 cut(s) | 1556, 2217, 2654, 2666 |
| Bme18I | GGWCC | 3 cut(s) | 1421, 1686, 2133 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 969 |
| BmeT110I | CYCGRG | 2 cut(s) | 1083, 1493 |
| BmgBI | CACGTC | 1 cut(s) | 2738 |
| BmgT120I | GGNCC | 5 cut(s) | 148, 1421, 1649, 1686, 2133 |
| BmiI | GGNNCC | 4 cut(s) | 15, 382, 1687, 2134 |
| BmrFI | CCNGG | 4 cut(s) | 1556, 2217, 2654, 2666 |
| BmrI | ACTGGG | 1 cut(s) | 1583 |
| BmsI | GCATC | 3 cut(s) | 622, 641, 1198 |
| BmuI | ACTGGG | 1 cut(s) | 1583 |
| BpiI | GAAGAC | 1 cut(s) | 1458 |
| Bpu14I | TTCGAA | 1 cut(s) | 1099 |
| BpuEI | CTTGAG | 1 cut(s) | 766 |
| BpuMI | CCSGG | 1 cut(s) | 1556 |
| Bsa29I | ATCGAT | 2 cut(s) | 1222, 2205 |
| BsaJI | CCNNGG | 6 cut(s) | 327, 1107, 1284, 1494, 1761, 1826 |
| BsaWI | WCCGGW | 3 cut(s) | 1864, 2259, 2432 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 590, 620, 2376, 2406 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 520, 535, 1529, 1561, 1936, 2002 |
| Bse118I | RCCGGY | 1 cut(s) | 2432 |
| Bse1I | ACTGG | 3 cut(s) | 17, 1589, 2621 |
| Bse3DI | GCAATG | 1 cut(s) | 2328 |
| BseAI | TCCGGA | 2 cut(s) | 1864, 2259 |
| BseBI | CCWGG | 3 cut(s) | 2217, 2654, 2666 |
| BseCI | ATCGAT | 2 cut(s) | 1222, 2205 |
| BseDI | CCNNGG | 6 cut(s) | 327, 1107, 1284, 1494, 1761, 1826 |
| BseGI | GGATG | 7 cut(s) | 95, 589, 1178, 1255, 1294, 2099, 2134 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 520, 535, 1529, 1561, 1936, 2002 |
| BseMI | GCAATG | 1 cut(s) | 2328 |
| BseMII | CTCAG | 2 cut(s) | 878, 1299 |
| BseNI | ACTGG | 3 cut(s) | 17, 1589, 2621 |
| BseRI | GAGGAG | 3 cut(s) | 577, 972, 1725 |
| BseSI | GKGCMC | 2 cut(s) | 771, 1042 |
| BseXI | GCAGC | 4 cut(s) | 86, 126, 166, 1646 |
| BseYI | CCCAGC | 1 cut(s) | 1952 |
| BsgI | GTGCAG | 2 cut(s) | 1638, 2660 |
| Bsh1236I | CGCG | 2 cut(s) | 1691, 1763 |
| BshFI | GGCC | 4 cut(s) | 150, 1533, 1565, 1651 |
| BshTI | ACCGGT | 1 cut(s) | 2432 |
| BshVI | ATCGAT | 2 cut(s) | 1222, 2205 |
| BsiHKAI | GWGCWC | 1 cut(s) | 948 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1083, 1493 |
| BsiSI | CCGG | 4 cut(s) | 1556, 1865, 2260, 2433 |
| BslFI | GGGAC | 2 cut(s) | 166, 1742 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 520, 535, 1529, 1561, 1936, 2002 |
| BsmAI | GTCTC | 4 cut(s) | 755, 956, 1401, 2077 |
| BsmFI | GGGAC | 2 cut(s) | 166, 1742 |
| BsmI | GAATGC | 1 cut(s) | 1080 |
| BsnI | GGCC | 4 cut(s) | 150, 1533, 1565, 1651 |
| BsoBI | CYCGRG | 2 cut(s) | 1083, 1493 |
| Bsp119I | TTCGAA | 1 cut(s) | 1099 |
| Bsp1286I | GDGCHC | 3 cut(s) | 771, 948, 1042 |
| Bsp13I | TCCGGA | 2 cut(s) | 1864, 2259 |
| Bsp19I | CCATGG | 2 cut(s) | 1107, 1284 |
| BspACI | CCGC | 4 cut(s) | 1483, 1689, 1761, 1763 |
| BspANI | GGCC | 4 cut(s) | 150, 1533, 1565, 1651 |
| BspCNI | CTCAG | 2 cut(s) | 879, 1300 |
| BspDI | ATCGAT | 2 cut(s) | 1222, 2205 |
| BspEI | TCCGGA | 2 cut(s) | 1864, 2259 |
| BspFNI | CGCG | 2 cut(s) | 1691, 1763 |
| BspHI | TCATGA | 1 cut(s) | 103 |
| BspLI | GGNNCC | 4 cut(s) | 15, 382, 1687, 2134 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspMI | ACCTGC | 1 cut(s) | 53 |
| BspPI | GGATC | 9 cut(s) | 8, 21, 194, 1227, 1602, 2364, 2505, 2676, 2805 |
| BspT104I | TTCGAA | 1 cut(s) | 1099 |
| BsrDI | GCAATG | 1 cut(s) | 2328 |
| BsrFI | RCCGGY | 1 cut(s) | 2432 |
| BsrI | ACTGG | 3 cut(s) | 17, 1589, 2621 |
| BssAI | RCCGGY | 1 cut(s) | 2432 |
| BssECI | CCNNGG | 6 cut(s) | 327, 1107, 1284, 1494, 1761, 1826 |
| BssSI | CACGAG | 1 cut(s) | 2544 |
| BssT1I | CCWWGG | 4 cut(s) | 327, 1107, 1284, 1826 |
| Bst2BI | CACGAG | 1 cut(s) | 2544 |
| Bst2UI | CCWGG | 3 cut(s) | 2217, 2654, 2666 |
| Bst4CI | ACNGT | 9 cut(s) | 85, 319, 353, 1340, 1382, 1412, 1708, 1838, 2715 |
| Bst6I | CTCTTC | 6 cut(s) | 848, 876, 1350, 1974, 2075, 2442 |
| BstBI | TTCGAA | 1 cut(s) | 1099 |
| BstC8I | GCNNGC | 6 cut(s) | 60, 72, 96, 152, 1653, 2784 |
| BstDEI | CTNAG | 6 cut(s) | 558, 887, 1266, 1308, 1456, 1701 |
| BstDSI | CCRYGG | 3 cut(s) | 1107, 1284, 1761 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 518 |
| BstF5I | GGATG | 7 cut(s) | 95, 589, 1178, 1255, 1294, 2099, 2134 |
| BstFNI | CGCG | 2 cut(s) | 1691, 1763 |
| BstHHI | GCGC | 1 cut(s) | 70 |
| BstMAI | GTCTC | 4 cut(s) | 755, 956, 1401, 2077 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 74, 1634 |
| BstNI | CCWGG | 3 cut(s) | 2217, 2654, 2666 |
| BstNSI | RCATGY | 2 cut(s) | 632, 2786 |
| BstSCI | CCNGG | 4 cut(s) | 1554, 2215, 2652, 2664 |
| BstSFI | CTRYAG | 6 cut(s) | 72, 273, 518, 1378, 2272, 2338 |
| BstSLI | GKGCMC | 2 cut(s) | 771, 1042 |
| BstUI | CGCG | 2 cut(s) | 1691, 1763 |
| BstV1I | GCAGC | 4 cut(s) | 86, 126, 166, 1646 |
| BstV2I | GAAGAC | 1 cut(s) | 1458 |
| BstX2I | RGATCY | 5 cut(s) | 13, 890, 1594, 2182, 2497 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 248 |
| BstYI | RGATCY | 5 cut(s) | 13, 890, 1594, 2182, 2497 |
| Bsu15I | ATCGAT | 2 cut(s) | 1222, 2205 |
| BsuRI | GGCC | 4 cut(s) | 150, 1533, 1565, 1651 |
| BsuTUI | ATCGAT | 2 cut(s) | 1222, 2205 |
| BtgI | CCRYGG | 3 cut(s) | 1107, 1284, 1761 |
| BtgZI | GCGATG | 1 cut(s) | 370 |
| BtrI | CACGTC | 1 cut(s) | 2738 |
| BtsCI | GGATG | 7 cut(s) | 95, 589, 1178, 1255, 1294, 2099, 2134 |
| BtsIMutI | CAGTG | 4 cut(s) | 771, 1336, 1596, 2313 |
| BveI | ACCTGC | 1 cut(s) | 53 |
| Cac8I | GCNNGC | 6 cut(s) | 60, 72, 96, 152, 1653, 2784 |
| CciI | TCATGA | 1 cut(s) | 103 |
| CfoI | GCGC | 1 cut(s) | 70 |
| Cfr10I | RCCGGY | 1 cut(s) | 2432 |
| Cfr13I | GGNCC | 5 cut(s) | 148, 1421, 1649, 1686, 2133 |
| Cfr42I | CCGCGG | 1 cut(s) | 1764 |
| ClaI | ATCGAT | 2 cut(s) | 1222, 2205 |
| Csp6I | GTAC | 8 cut(s) | 491, 555, 732, 1341, 1431, 1778, 1927, 2332 |
| CspAI | ACCGGT | 1 cut(s) | 2432 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1956, 1991 |
| CviQI | GTAC | 8 cut(s) | 491, 555, 732, 1341, 1431, 1778, 1927, 2332 |
| DdeI | CTNAG | 6 cut(s) | 558, 887, 1266, 1308, 1456, 1701 |
| DraI | TTTAAA | 1 cut(s) | 1960 |
| DriI | GACNNNNNGTC | 1 cut(s) | 969 |
| EaeI | YGGCCR | 1 cut(s) | 1563 |
| Eam1104I | CTCTTC | 6 cut(s) | 848, 876, 1350, 1974, 2075, 2442 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 969 |
| EarI | CTCTTC | 6 cut(s) | 848, 876, 1350, 1974, 2075, 2442 |
| Eco130I | CCWWGG | 4 cut(s) | 327, 1107, 1284, 1826 |
| Eco32I | GATATC | 3 cut(s) | 526, 1768, 2696 |
| Eco47I | GGWCC | 3 cut(s) | 1421, 1686, 2133 |
| Eco57I | CTGAAG | 3 cut(s) | 348, 1331, 2337 |
| Eco88I | CYCGRG | 2 cut(s) | 1083, 1493 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 518 |
| EcoRII | CCWGG | 3 cut(s) | 2215, 2652, 2664 |
| EcoRV | GATATC | 3 cut(s) | 526, 1768, 2696 |
| EcoT14I | CCWWGG | 4 cut(s) | 327, 1107, 1284, 1826 |
| EcoT22I | ATGCAT | 2 cut(s) | 634, 2784 |
| ErhI | CCWWGG | 4 cut(s) | 327, 1107, 1284, 1826 |
| FaqI | GGGAC | 2 cut(s) | 166, 1742 |
| FauI | CCCGC | 1 cut(s) | 1768 |
| FauNDI | CATATG | 2 cut(s) | 282, 289 |
| FbaI | TGATCA | 2 cut(s) | 460, 1327 |
| FblI | GTMKAC | 2 cut(s) | 126, 619 |
| Fnu4HI | GCNGC | 5 cut(s) | 75, 115, 155, 1635, 2810 |
| FokI | GGATG | 7 cut(s) | 102, 596, 1185, 1242, 1301, 2106, 2141 |
| Fsp4HI | GCNGC | 5 cut(s) | 75, 115, 155, 1635, 2810 |
| FspBI | CTAG | 7 cut(s) | 623, 1793, 1827, 2186, 2292, 2501, 2790 |
| GlaI | GCGC | 1 cut(s) | 69 |
| GluI | GCNGC | 5 cut(s) | 75, 115, 155, 1635, 2810 |
| GsaI | CCCAGC | 1 cut(s) | 1956 |
| HaeIII | GGCC | 4 cut(s) | 150, 1533, 1565, 1651 |
| HapII | CCGG | 4 cut(s) | 1556, 1865, 2260, 2433 |
| HhaI | GCGC | 1 cut(s) | 70 |
| Hin6I | GCGC | 1 cut(s) | 68 |
| HinP1I | GCGC | 1 cut(s) | 68 |
| HincII | GTYRAC | 3 cut(s) | 238, 620, 2440 |
| HindII | GTYRAC | 3 cut(s) | 238, 620, 2440 |
| HinfI | GANTC | 8 cut(s) | 245, 296, 442, 748, 1667, 1942, 2277, 2644 |
| HpaI | GTTAAC | 1 cut(s) | 238 |
| HpaII | CCGG | 4 cut(s) | 1556, 1865, 2260, 2433 |
| HphI | GGTGA | 7 cut(s) | 365, 1149, 1273, 1911, 1951, 2101, 2280 |
| Hpy188I | TCNGA | 9 cut(s) | 196, 598, 691, 790, 895, 1303, 1327, 2482, 2700 |
| Hpy99I | CGWCG | 2 cut(s) | 200, 621 |
| HpyAV | CCTTC | 5 cut(s) | 408, 441, 2257, 2301, 2488 |
| HpyCH4III | ACNGT | 9 cut(s) | 85, 319, 353, 1340, 1382, 1412, 1708, 1838, 2715 |
| HpyCH4IV | ACGT | 4 cut(s) | 1006, 1780, 2051, 2737 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 74, 1634 |
| HpyF3I | CTNAG | 6 cut(s) | 558, 887, 1266, 1308, 1456, 1701 |
| HpySE526I | ACGT | 4 cut(s) | 1006, 1780, 2051, 2737 |
| HspAI | GCGC | 1 cut(s) | 68 |
| Kpn2I | TCCGGA | 2 cut(s) | 1864, 2259 |
| Ksp22I | TGATCA | 2 cut(s) | 460, 1327 |
| KspAI | GTTAAC | 1 cut(s) | 238 |
| KspI | CCGCGG | 1 cut(s) | 1764 |
| LmnI | GCTCC | 1 cut(s) | 2791 |
| Lsp1109I | GCAGC | 4 cut(s) | 86, 126, 166, 1646 |
| LweI | GCATC | 3 cut(s) | 622, 641, 1198 |
| MaeI | CTAG | 7 cut(s) | 623, 1793, 1827, 2186, 2292, 2501, 2790 |
| MaeII | ACGT | 4 cut(s) | 1006, 1780, 2051, 2737 |
| MfeI | CAATTG | 2 cut(s) | 48, 1887 |
| MflI | RGATCY | 5 cut(s) | 13, 890, 1594, 2182, 2497 |
| MhlI | GDGCHC | 3 cut(s) | 771, 948, 1042 |
| MlsI | TGGCCA | 1 cut(s) | 1565 |
| MluNI | TGGCCA | 1 cut(s) | 1565 |
| MlyI | GAGTC | 2 cut(s) | 757, 2271 |
| MmeI | TCCRAC | 3 cut(s) | 67, 219, 1991 |
| Mox20I | TGGCCA | 1 cut(s) | 1565 |
| Mph1103I | ATGCAT | 2 cut(s) | 634, 2784 |
| MroI | TCCGGA | 2 cut(s) | 1864, 2259 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2516 |
| MscI | TGGCCA | 1 cut(s) | 1565 |
| MslI | CAYNNNNRTG | 5 cut(s) | 108, 824, 1275, 1752, 2544 |
| Msp20I | TGGCCA | 1 cut(s) | 1565 |
| MspA1I | CMGCKG | 1 cut(s) | 1763 |
| MspI | CCGG | 4 cut(s) | 1556, 1865, 2260, 2433 |
| MspR9I | CCNGG | 4 cut(s) | 1556, 2217, 2654, 2666 |
| MunI | CAATTG | 2 cut(s) | 48, 1887 |
| Mva1269I | GAATGC | 1 cut(s) | 1080 |
| MvaI | CCWGG | 3 cut(s) | 2217, 2654, 2666 |
| MvnI | CGCG | 2 cut(s) | 1691, 1763 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 74, 1634 |
| NciI | CCSGG | 1 cut(s) | 1556 |
| NcoI | CCATGG | 2 cut(s) | 1107, 1284 |
| NdeI | CATATG | 2 cut(s) | 282, 289 |
| NlaIV | GGNNCC | 4 cut(s) | 15, 382, 1687, 2134 |
| NmuCI | GTSAC | 5 cut(s) | 857, 1129, 1279, 1291, 2064 |
| NsiI | ATGCAT | 2 cut(s) | 634, 2784 |
| NspI | RCATGY | 2 cut(s) | 632, 2786 |
| NspV | TTCGAA | 1 cut(s) | 1099 |
| PaeI | GCATGC | 1 cut(s) | 2786 |
| PaeR7I | CTCGAG | 1 cut(s) | 1083 |
| PagI | TCATGA | 1 cut(s) | 103 |
| PaqCI | CACCTGC | 1 cut(s) | 53 |
| PctI | GAATGC | 1 cut(s) | 1080 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2516 |
| PfeI | GAWTC | 6 cut(s) | 245, 296, 442, 1667, 1942, 2644 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1936 |
| PinAI | ACCGGT | 1 cut(s) | 2432 |
| PkrI | GCNGC | 5 cut(s) | 76, 116, 156, 1636, 2811 |
| PleI | GAGTC | 2 cut(s) | 756, 2271 |
| PpsI | GAGTC | 2 cut(s) | 756, 2271 |
| PshBI | ATTAAT | 1 cut(s) | 2402 |
| Psp6I | CCWGG | 3 cut(s) | 2215, 2652, 2664 |
| PspFI | CCCAGC | 1 cut(s) | 1952 |
| PspGI | CCWGG | 3 cut(s) | 2215, 2652, 2664 |
| PspN4I | GGNNCC | 4 cut(s) | 15, 382, 1687, 2134 |
| PspPI | GGNCC | 5 cut(s) | 148, 1421, 1649, 1686, 2133 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| PsuI | RGATCY | 5 cut(s) | 13, 890, 1594, 2182, 2497 |
| RsaI | GTAC | 8 cut(s) | 492, 556, 733, 1342, 1432, 1779, 1928, 2333 |
| RsaNI | GTAC | 8 cut(s) | 491, 555, 732, 1341, 1431, 1778, 1927, 2332 |
| RseI | CAYNNNNRTG | 5 cut(s) | 108, 824, 1275, 1752, 2544 |
| SacII | CCGCGG | 1 cut(s) | 1764 |
| SalI | GTCGAC | 1 cut(s) | 618 |
| SatI | GCNGC | 5 cut(s) | 75, 115, 155, 1635, 2810 |
| Sau96I | GGNCC | 5 cut(s) | 148, 1421, 1649, 1686, 2133 |
| SchI | GAGTC | 2 cut(s) | 757, 2271 |
| ScrFI | CCNGG | 4 cut(s) | 1556, 2217, 2654, 2666 |
| SduI | GDGCHC | 3 cut(s) | 771, 948, 1042 |
| SfaNI | GCATC | 3 cut(s) | 622, 641, 1198 |
| SfcI | CTRYAG | 6 cut(s) | 72, 273, 518, 1378, 2272, 2338 |
| Sfr274I | CTCGAG | 1 cut(s) | 1083 |
| Sfr303I | CCGCGG | 1 cut(s) | 1764 |
| SfuI | TTCGAA | 1 cut(s) | 1099 |
| SgrBI | CCGCGG | 1 cut(s) | 1764 |
| SinI | GGWCC | 3 cut(s) | 1421, 1686, 2133 |
| SlaI | CTCGAG | 1 cut(s) | 1083 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 108, 824, 1275, 1752, 2544 |
| SmlI | CTYRAG | 2 cut(s) | 745, 1083 |
| SmoI | CTYRAG | 2 cut(s) | 745, 1083 |
| SphI | GCATGC | 1 cut(s) | 2786 |
| SsiI | CCGC | 4 cut(s) | 1483, 1689, 1761, 1763 |
| SspI | AATATT | 1 cut(s) | 866 |
| SspMI | CTAG | 7 cut(s) | 623, 1793, 1827, 2186, 2292, 2501, 2790 |
| StyD4I | CCNGG | 4 cut(s) | 1554, 2215, 2652, 2664 |
| StyI | CCWWGG | 4 cut(s) | 327, 1107, 1284, 1826 |
| TaaI | ACNGT | 9 cut(s) | 85, 319, 353, 1340, 1382, 1412, 1708, 1838, 2715 |
| TaiI | ACGT | 4 cut(s) | 1009, 1783, 2054, 2740 |
| TaqI | TCGA | 8 cut(s) | 619, 1072, 1084, 1099, 1222, 1912, 2205, 2800 |
| TaqII | GACCGA | 1 cut(s) | 1457 |
| TatI | WGTACW | 3 cut(s) | 490, 1340, 1430 |
| TfiI | GAWTC | 6 cut(s) | 245, 296, 442, 1667, 1942, 2644 |
| TscAI | CASTG | 4 cut(s) | 771, 1343, 1596, 2320 |
| TseFI | GTSAC | 5 cut(s) | 857, 1129, 1279, 1291, 2064 |
| TseI | GCWGC | 5 cut(s) | 74, 114, 154, 1634, 2809 |
| Tsp45I | GTSAC | 5 cut(s) | 857, 1129, 1279, 1291, 2064 |
| TspGWI | ACGGA | 2 cut(s) | 651, 2369 |
| TspRI | CASTG | 4 cut(s) | 771, 1343, 1596, 2320 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1936 |
| VpaK11BI | GGWCC | 3 cut(s) | 1421, 1686, 2133 |
| VspI | ATTAAT | 1 cut(s) | 2402 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 518 |
| XapI | RAATTY | 4 cut(s) | 169, 1807, 1962, 2483 |
| XbaI | TCTAGA | 2 cut(s) | 1792, 2185 |
| XceI | RCATGY | 2 cut(s) | 632, 2786 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 47 |
| XhoI | CTCGAG | 1 cut(s) | 1083 |
| XmaJI | CCTAGG | 1 cut(s) | 1826 |
| XmiI | GTMKAC | 2 cut(s) | 126, 619 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2516 |
| XspI | CTAG | 7 cut(s) | 623, 1793, 1827, 2186, 2292, 2501, 2790 |
| Zsp2I | ATGCAT | 2 cut(s) | 634, 2784 |