Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 73 | 2.7e-11 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 518 |
| AciI | CCGC | 1 cut(s) | 389 |
| AclWI | GGATC | 3 cut(s) | 443, 588, 789 |
| AcsI | RAATTY | 2 cut(s) | 399, 700 |
| AcuI | CTGAAG | 2 cut(s) | 507, 864 |
| AcvI | CACGTG | 1 cut(s) | 561 |
| AdeI | CACNNNGTG | 1 cut(s) | 371 |
| AfaI | GTAC | 3 cut(s) | 393, 614, 841 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 431, 432 |
| AflIII | ACRYGT | 2 cut(s) | 769, 832 |
| AgsI | TTSAA | 5 cut(s) | 91, 415, 682, 752, 776 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 83, 115 |
| AluBI | AGCT | 4 cut(s) | 295, 470, 608, 900 |
| AluI | AGCT | 4 cut(s) | 295, 470, 608, 900 |
| Alw26I | GTCTC | 2 cut(s) | 170, 918 |
| AlwI | GGATC | 3 cut(s) | 443, 588, 789 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 608, 881 |
| ApeKI | GCWGC | 1 cut(s) | 722 |
| ApoI | RAATTY | 2 cut(s) | 399, 700 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 95 |
| AsuC2I | CCSGG | 1 cut(s) | 426 |
| BbrPI | CACGTG | 1 cut(s) | 561 |
| BbvI | GCAGC | 1 cut(s) | 734 |
| BccI | CCATC | 1 cut(s) | 208 |
| BciVI | GTATCC | 1 cut(s) | 467 |
| BcnI | CCSGG | 1 cut(s) | 426 |
| BcoDI | GTCTC | 2 cut(s) | 170, 918 |
| BfaI | CTAG | 5 cut(s) | 41, 117, 188, 591, 905 |
| BfuI | GTATCC | 1 cut(s) | 467 |
| BglII | AGATCT | 1 cut(s) | 76 |
| BisI | GCNGC | 1 cut(s) | 723 |
| BlsI | GCNGC | 1 cut(s) | 724 |
| Bme1390I | CCNGG | 1 cut(s) | 426 |
| BmrFI | CCNGG | 1 cut(s) | 426 |
| BmsI | GCATC | 1 cut(s) | 472 |
| BpuMI | CCSGG | 1 cut(s) | 426 |
| BsaAI | YACGTR | 1 cut(s) | 561 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 431, 432 |
| Bse1I | ACTGG | 3 cut(s) | 184, 597, 746 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 431, 432 |
| BseMII | CTCAG | 2 cut(s) | 395, 600 |
| BseNI | ACTGG | 3 cut(s) | 184, 597, 746 |
| BseXI | GCAGC | 1 cut(s) | 734 |
| BsgI | GTGCAG | 1 cut(s) | 621 |
| BsiSI | CCGG | 1 cut(s) | 426 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 431, 432 |
| BsmAI | GTCTC | 2 cut(s) | 170, 918 |
| Bsp143I | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| BspACI | CCGC | 1 cut(s) | 389 |
| BspCNI | CTCAG | 2 cut(s) | 396, 601 |
| BspPI | GGATC | 3 cut(s) | 443, 588, 789 |
| BsrI | ACTGG | 3 cut(s) | 184, 597, 746 |
| BssMI | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| BstBAI | YACGTR | 1 cut(s) | 561 |
| BstC8I | GCNNGC | 4 cut(s) | 293, 363, 387, 693 |
| BstDEI | CTNAG | 3 cut(s) | 404, 609, 673 |
| BstKTI | GATC | 7 cut(s) | 79, 122, 379, 438, 596, 784, 850 |
| BstMAI | GTCTC | 2 cut(s) | 170, 918 |
| BstMBI | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 491, 835 |
| BstNSI | RCATGY | 8 cut(s) | 195, 365, 385, 389, 695, 773, 829, 836 |
| BstSCI | CCNGG | 1 cut(s) | 424 |
| BstV1I | GCAGC | 1 cut(s) | 734 |
| BstX2I | RGATCY | 2 cut(s) | 76, 593 |
| BstYI | RGATCY | 2 cut(s) | 76, 593 |
| BsuI | GTATCC | 1 cut(s) | 467 |
| BtsIMutI | CAGTG | 2 cut(s) | 504, 604 |
| Cac8I | GCNNGC | 4 cut(s) | 293, 363, 387, 693 |
| CaiI | CAGNNNCTG | 2 cut(s) | 608, 881 |
| Csp6I | GTAC | 3 cut(s) | 392, 613, 840 |
| CviJI | RGCY | 9 cut(s) | 116, 295, 470, 494, 608, 626, 652, 725, 900 |
| CviKI_1 | RGCY | 9 cut(s) | 116, 295, 470, 494, 608, 626, 652, 725, 900 |
| CviQI | GTAC | 3 cut(s) | 392, 613, 840 |
| DdeI | CTNAG | 3 cut(s) | 404, 609, 673 |
| DpnI | GATC | 7 cut(s) | 78, 121, 378, 437, 595, 783, 849 |
| DpnII | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| DraIII | CACNNNGTG | 1 cut(s) | 371 |
| Eco32I | GATATC | 2 cut(s) | 275, 862 |
| Eco57I | CTGAAG | 2 cut(s) | 507, 864 |
| Eco72I | CACGTG | 1 cut(s) | 561 |
| EcoRI | GAATTC | 1 cut(s) | 399 |
| EcoRV | GATATC | 2 cut(s) | 275, 862 |
| EcoT22I | ATGCAT | 2 cut(s) | 363, 387 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 505, 537, 837, 869 |
| FauNDI | CATATG | 1 cut(s) | 331 |
| FblI | GTMKAC | 1 cut(s) | 518 |
| Fnu4HI | GCNGC | 1 cut(s) | 723 |
| Fsp4HI | GCNGC | 1 cut(s) | 723 |
| FspBI | CTAG | 5 cut(s) | 41, 117, 188, 591, 905 |
| GluI | GCNGC | 1 cut(s) | 723 |
| HapII | CCGG | 1 cut(s) | 426 |
| HincII | GTYRAC | 2 cut(s) | 163, 197 |
| HindII | GTYRAC | 2 cut(s) | 163, 197 |
| HinfI | GANTC | 1 cut(s) | 809 |
| HpaII | CCGG | 1 cut(s) | 426 |
| Hpy166II | GTNNAC | 4 cut(s) | 163, 185, 197, 519 |
| Hpy188I | TCNGA | 2 cut(s) | 405, 814 |
| Hpy188III | TCNNGA | 4 cut(s) | 34, 245, 865, 882 |
| Hpy8I | GTNNAC | 4 cut(s) | 163, 185, 197, 519 |
| HpyAV | CCTTC | 2 cut(s) | 122, 507 |
| HpyCH4IV | ACGT | 1 cut(s) | 560 |
| HpyCH4V | TGCA | 7 cut(s) | 329, 361, 365, 385, 485, 602, 857 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 491, 835 |
| HpyF3I | CTNAG | 3 cut(s) | 404, 609, 673 |
| HpySE526I | ACGT | 1 cut(s) | 560 |
| Kzo9I | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| LmnI | GCTCC | 1 cut(s) | 217 |
| Lsp1109I | GCAGC | 1 cut(s) | 734 |
| LweI | GCATC | 1 cut(s) | 472 |
| MaeI | CTAG | 5 cut(s) | 41, 117, 188, 591, 905 |
| MaeII | ACGT | 1 cut(s) | 560 |
| MaeIII | GTNAC | 5 cut(s) | 7, 527, 548, 556, 710 |
| MalI | GATC | 7 cut(s) | 78, 121, 378, 437, 595, 783, 849 |
| MboI | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| MboII | GAAGA | 3 cut(s) | 38, 386, 857 |
| MflI | RGATCY | 2 cut(s) | 76, 593 |
| MluCI | AATT | 4 cut(s) | 230, 353, 399, 700 |
| MlyI | GAGTC | 1 cut(s) | 818 |
| MmeI | TCCRAC | 1 cut(s) | 786 |
| MnlI | CCTC | 5 cut(s) | 77, 103, 399, 539, 611 |
| Mph1103I | ATGCAT | 2 cut(s) | 363, 387 |
| MroXI | GAANNNNTTC | 1 cut(s) | 95 |
| MseI | TTAA | 1 cut(s) | 822 |
| MslI | CAYNNNNRTG | 3 cut(s) | 110, 384, 824 |
| MspI | CCGG | 1 cut(s) | 426 |
| MspR9I | CCNGG | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 491, 835 |
| NciI | CCSGG | 1 cut(s) | 426 |
| NdeI | CATATG | 1 cut(s) | 331 |
| NdeII | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| NmuCI | GTSAC | 3 cut(s) | 7, 556, 710 |
| NsiI | ATGCAT | 2 cut(s) | 363, 387 |
| NspI | RCATGY | 8 cut(s) | 195, 365, 385, 389, 695, 773, 829, 836 |
| PaeI | GCATGC | 3 cut(s) | 365, 389, 695 |
| PciI | ACATGT | 2 cut(s) | 769, 832 |
| PdmI | GAANNNNTTC | 1 cut(s) | 95 |
| PkrI | GCNGC | 1 cut(s) | 724 |
| PleI | GAGTC | 1 cut(s) | 817 |
| PmaCI | CACGTG | 1 cut(s) | 561 |
| PmlI | CACGTG | 1 cut(s) | 561 |
| PpsI | GAGTC | 1 cut(s) | 817 |
| Ppu21I | YACGTR | 1 cut(s) | 561 |
| PscI | ACATGT | 2 cut(s) | 769, 832 |
| PspCI | CACGTG | 1 cut(s) | 561 |
| PstNI | CAGNNNCTG | 2 cut(s) | 608, 881 |
| PsuI | RGATCY | 2 cut(s) | 76, 593 |
| RsaI | GTAC | 3 cut(s) | 393, 614, 841 |
| RsaNI | GTAC | 3 cut(s) | 392, 613, 840 |
| RseI | CAYNNNNRTG | 3 cut(s) | 110, 384, 824 |
| SaqAI | TTAA | 1 cut(s) | 822 |
| SatI | GCNGC | 1 cut(s) | 723 |
| Sau3AI | GATC | 7 cut(s) | 76, 119, 376, 435, 593, 781, 847 |
| SchI | GAGTC | 1 cut(s) | 818 |
| ScrFI | CCNGG | 1 cut(s) | 426 |
| SfaNI | GCATC | 1 cut(s) | 472 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 110, 384, 824 |
| SphI | GCATGC | 3 cut(s) | 365, 389, 695 |
| Sse9I | AATT | 4 cut(s) | 230, 353, 399, 700 |
| SsiI | CCGC | 1 cut(s) | 389 |
| SspMI | CTAG | 5 cut(s) | 41, 117, 188, 591, 905 |
| StyD4I | CCNGG | 1 cut(s) | 424 |
| TaiI | ACGT | 1 cut(s) | 563 |
| TaqI | TCGA | 1 cut(s) | 784 |
| TasI | AATT | 4 cut(s) | 230, 353, 399, 700 |
| TatI | WGTACW | 1 cut(s) | 612 |
| Tru1I | TTAA | 1 cut(s) | 822 |
| Tru9I | TTAA | 1 cut(s) | 822 |
| TscAI | CASTG | 2 cut(s) | 511, 604 |
| TseFI | GTSAC | 3 cut(s) | 7, 556, 710 |
| TseI | GCWGC | 1 cut(s) | 722 |
| Tsp45I | GTSAC | 3 cut(s) | 7, 556, 710 |
| TspDTI | ATGAA | 4 cut(s) | 86, 346, 680, 713 |
| TspRI | CASTG | 2 cut(s) | 511, 604 |
| XapI | RAATTY | 2 cut(s) | 399, 700 |
| XceI | RCATGY | 8 cut(s) | 195, 365, 385, 389, 695, 773, 829, 836 |
| XmiI | GTMKAC | 1 cut(s) | 518 |
| XmnI | GAANNNNTTC | 1 cut(s) | 95 |
| XspI | CTAG | 5 cut(s) | 41, 117, 188, 591, 905 |
| Zsp2I | ATGCAT | 2 cut(s) | 363, 387 |