RchiOBHm_Chr5g0064121

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000071
Physical Location & Seq
Reverse (-)
69947887 .. 69952335
4449 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34018

Sequence Viewer

Length: 2580 bp
ATGCTACATGTTCCTCGTCTTCCACTATATGTAGTCCGTTTCTCATCCATGTTGAAAAATCAATACAGAAATTACCATCATTTAATTTCAATATGGTATCAGAGCAGAAATCCTCATAGGACCTGCATCTATTTTGGTCTTTCAAGGCTCTCATGTTTCTCTATCCTTCTCATTAAAATGACAGAAGGAGAAGGTTCTCTCTCTGCAAAGACAGAAAGCTCAGATGGGAATCTGAATCAGCCTGAAGAAGATAAAGTGTTTCAACTGCTTGCAAGTCTGGGATATGAATATGAAGATCTACGAAGCCATCTTTTGATGAGCCCTGAGTTTCCTTCGTTCACAACAGTATGCAACTCCATTCAACGTGAAGAAGTGAGCAAAAAGGTGATGAATATGGATAGCAGAGTTGGAGGATCAGAAGCTATGGCATTTGCTGCAAACAAAAGTGTCACAAGCGACAGAACATACAAGGGCAAGAGGCCATATCTGAAGTGCACTCATTGTGAACACATTGGACGAACTGGTATAGGCCACACAAGAGAGAGATGTTGGATATTACATCCAGAACTGAAACCTAAGTTCAATGAGGACCAGAAGAATCAAAGAGGCACCATTCAGAGAAGCTCTTACATCTCTAATCTAAAGGCAAACTTCAGCAACACTTCTGAAGAGATGATGAAGTTCACGTCCAATCCAATAACTATCATAAATGAGTTTGCTACATATCTTCAAAAGAAGCAAGGCAGTTTAGAGAGCAATGAAAATGGAAGCACAACTGCTATGCTTGGAAATTTTGCTGGTTTTCTATCAAAATCAAATATGGCTTCTTTAGAAGATATCCTAGGTATTATTTGCGCCATTTCTATTGCTTTAGATGTCAGTAAGAATCATGATTTTTGGATAGTGGATTCAGGTGCCTCAGATCACATGACAAACAATTCTTTCATATTATATGATTTTGAAACTGTGTCAAAACCTTCACATGTCTCAATTGCTAATGGCAACGATGTTCCCATCTTAGGAAAAGGAAAATTAAAGCTTTTTTTAGATAGCGTTGAGTCATTTGCGCTATTTGTACCATCTTTTCCATTCCAACTCCTGTCTGTAGGAAGGTTAATGAACTCGTTGGATTGTCTAACTATTTTCTCTCCTTCTAATGTTGTGTTTCAGGATCGAGTGTCCAAGAAGAAGATTGGTGAAGGTTCACAACAACCAGTTCAACAAATTGTGGACACTGAAGAGGTACAGGCAGACTCCAACACTCAAGATCATCAACCAGAGGTGGTACCAAACATGCCTCAACCTCGAAGAAACCCACCAAGGGGGAGACATCTACCAGCAAGACTTCAGGAATATGAGACTTACACACCACGTTATCCTCTTGCACAAGTTGCTCACTCCACCAATAGCTCCTCTCCACACAGAGCATTCCTCATCAAGATTTCCAAAGAAGGCGAACCAAGGAACTTTGAAGAAGCAAATCAATCATTAGTTTGGAAGGAAGCTATGCATGATGAACTCAAGGCCCTTGATGATAATAGAACCTGGAGTATAGTTAAGCTTCCCAAAAGGCAGAAAATTGTAGGGGCAAGATGGATTTACAAAATCAAGTTCAACTCCGATGATTCAATTGAGCGACATAAGGCAAGGTTAGTTGCTCGTGGCTTCACTCAAACCTTTGGTGTTGATTATAAGGAGACCTTTGCTCCAGTTGCTAAAATGAACACAGTTCGAGTTTTGTTATCTGTTGCTGTGAATTGTGGATGGTCTCTATACCAAATGGATGTCAAGAATGCCTTTTTGCATGGGGATCTAGAAGAAGATGTGTATATGAGATTACCTCCTGGACATTCACGTGAAAGTGAATCTGGAATGGTGTGCAAACTTCACAAGGCCTTGTATGGTTTGAAACAATCCCCACGTGCTTGGTATTCCAAACTGAGTTCGGTTCTTCTTGCCTCAAGCTTCAAGCGAAGTCATGCAGACTCCATGTTTATTCGAAATGGCAAGGCTAGCAAGTTGGTTGTTCTAGTGATTCTTCGCTACCTAAAGGGCACAGTTGATCGAGGAATTGTTATGAAGAATAATGGTCACTTCAACCTTGTGGGCTACTCAGACTCGGACTGGGCGGGAAATGCCATTGATCGAAAGTCCACAACTGGATACTGTACTTTCATTGGAGGCAATCTAGTTACTTGGAAAAGCAAGAAACAAACTGTGGTTGCTCATTCTAGCGCAGAAGCTGAGTATCGTGCAATGGCATCCATAACTTGTGAACTCATATGGCTAAAGACATTGCTGGGTGACTTAGGCATTGTGTGCACTATGCCTATATCTCTACATTGTGACAACCAGGCTGCCATGCATATTGCAGCCAATCCAGTCTTCCATGAACGTACCAAACATATTGAAGTTAATTGTCACTTTGTTCGAGATCAGGTTCAGTCTAAACTTATTAAAACAGTGTACACACGATCATGTGATCAACTGGCAGTCATTTTCACCAAGATTCTCACTTTCGCTCAGTTTGAACGTTTGCTTTCCAAGCTTGGCTCAAGGAACTGCCTTGATCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

859

Amino Acids

97.06

Weight (kDa)

9.1

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 300 - 374 3.3e-13 Pol polyprotein, beta-barrel domain
RVT_2 PF07727 513 - 678 2.3e-52 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1692
Acc36I ACCTGC 1 cut(s) 131
Acc65I GGTACC 1 cut(s) 1285
AccB1I GGYRCC 3 cut(s) 608, 914, 1285
AciI CCGC 1 cut(s) 2129
AclI AACGTT 1 cut(s) 2533
AclWI GGATC 4 cut(s) 421, 1179, 1818, 2564
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 6 cut(s) 264, 509, 637, 687, 1257, 1331
AcvI CACGTG 2 cut(s) 1856, 1922
AfaI GTAC 6 cut(s) 1077, 1245, 1287, 2170, 2398, 2468
AfiI CCNNNNNNNGG 3 cut(s) 1019, 1321, 1322
AflIII ACRYGT 2 cut(s) 7, 982
AjiI CACGTC 1 cut(s) 687
AjnI CCWGG 3 cut(s) 1544, 1843, 2352
AjuI GAANNNNNNNTTGG 2 cut(s) 2369, 2401
Alw21I GWGCWC 2 cut(s) 497, 2324
Alw26I GTCTC 5 cut(s) 991, 1321, 1352, 1691, 1773
Alw44I GTGCAC 2 cut(s) 493, 2320
AlwI GGATC 4 cut(s) 421, 1179, 1818, 2564
AlwNI CAGNNNCTG 1 cut(s) 2243
AoxI GGCC 4 cut(s) 479, 529, 1524, 1893
ApaLI GTGCAC 2 cut(s) 493, 2320
ApeKI GCWGC 3 cut(s) 434, 2357, 2372
ApoI RAATTY 1 cut(s) 790
Asp718I GGTACC 1 cut(s) 1285
AspA2I CCTAGG 1 cut(s) 841
AspLEI GCGC 3 cut(s) 857, 1069, 2237
AspS9I GGNCC 3 cut(s) 120, 589, 1525
AsuHPI GGTGA 4 cut(s) 397, 1208, 2315, 2494
AsuII TTCGAA 1 cut(s) 1999
AsuNHI GCTAGC 1 cut(s) 2012
AvaII GGWCC 2 cut(s) 120, 589
AvrII CCTAGG 1 cut(s) 841
BaeGI GKGCMC 3 cut(s) 497, 2057, 2324
BanI GGYRCC 3 cut(s) 608, 914, 1285
BanII GRGCYC 1 cut(s) 323
BauI CACGAG 1 cut(s) 1659
BbrPI CACGTG 2 cut(s) 1856, 1922
BbsI GAAGAC 2 cut(s) 11, 2377
Bbv12I GWGCWC 2 cut(s) 497, 2324
BbvI GCAGC 3 cut(s) 421, 2344, 2384
BccI CCATC 7 cut(s) 84, 218, 315, 1022, 1087, 1587, 1758
BciT130I CCWGG 3 cut(s) 1546, 1845, 2354
BciVI GTATCC 1 cut(s) 2156
BclI TGATCA 1 cut(s) 2482
BcoDI GTCTC 5 cut(s) 991, 1321, 1352, 1691, 1773
BfaI CTAG 6 cut(s) 842, 1814, 2013, 2030, 2189, 2232
BfmI CTRYAG 1 cut(s) 1104
BfuAI ACCTGC 1 cut(s) 131
BfuI GTATCC 1 cut(s) 2156
BglII AGATCT 1 cut(s) 295
BisI GCNGC 3 cut(s) 435, 2358, 2373
BlnI CCTAGG 1 cut(s) 841
BlsI GCNGC 3 cut(s) 436, 2359, 2374
Bme1390I CCNGG 3 cut(s) 1546, 1845, 2354
Bme18I GGWCC 2 cut(s) 120, 589
BmgBI CACGTC 1 cut(s) 687
BmgT120I GGNCC 3 cut(s) 120, 589, 1525
BmiI GGNNCC 3 cut(s) 610, 916, 1287
BmrFI CCNGG 3 cut(s) 1546, 1845, 2354
BmrI ACTGGG 1 cut(s) 2134
BmsI GCATC 2 cut(s) 135, 2270
BmtI GCTAGC 1 cut(s) 2016
BmuI ACTGGG 1 cut(s) 2134
BpiI GAAGAC 2 cut(s) 11, 2377
BplI GAGNNNNNCTC 4 cut(s) 1416, 1448, 1825, 1857
BpmI CTGGAG 2 cut(s) 1567, 1692
Bpu14I TTCGAA 1 cut(s) 1999
BpuEI CTTGAG 4 cut(s) 1248, 1505, 1945, 2539
BsaAI YACGTR 2 cut(s) 1856, 1922
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 1691, 1773
BsaJI CCNNGG 3 cut(s) 841, 1319, 1460
BsaXI ACNNNNNCTCC 2 cut(s) 1690, 1720
Bsc4I CCNNNNNNNGG 3 cut(s) 1019, 1321, 1322
Bse1I ACTGG 7 cut(s) 526, 1214, 1709, 2129, 2164, 2381, 2493
Bse3DI GCAATG 3 cut(s) 763, 2262, 2294
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 3 cut(s) 1546, 1845, 2354
BseDI CCNNGG 3 cut(s) 841, 1319, 1460
BseGI GGATG 5 cut(s) 44, 559, 1769, 1789, 2261
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 1019, 1321, 1322
BseMI GCAATG 3 cut(s) 763, 2262, 2294
BseMII CTCAG 7 cut(s) 234, 315, 933, 1931, 2127, 2235, 2537
BseNI ACTGG 7 cut(s) 526, 1214, 1709, 2129, 2164, 2381, 2493
BseRI GAGGAG 1 cut(s) 1402
BseSI GKGCMC 3 cut(s) 497, 2057, 2324
BseXI GCAGC 3 cut(s) 421, 2344, 2384
BseYI CCCAGC 1 cut(s) 2299
BshFI GGCC 4 cut(s) 481, 531, 1526, 1895
BshNI GGYRCC 3 cut(s) 608, 914, 1285
BsiHKAI GWGCWC 2 cut(s) 497, 2324
BslI CCNNNNNNNGG 3 cut(s) 1019, 1321, 1322
BsmAI GTCTC 5 cut(s) 991, 1321, 1352, 1691, 1773
BsmI GAATGC 2 cut(s) 1427, 1798
BsnI GGCC 4 cut(s) 481, 531, 1526, 1895
Bso31I GGTCTC 2 cut(s) 1691, 1773
Bsp119I TTCGAA 1 cut(s) 1999
Bsp1286I GDGCHC 4 cut(s) 323, 497, 2057, 2324
Bsp1407I TGTACA 1 cut(s) 2466
BspACI CCGC 1 cut(s) 2129
BspANI GGCC 4 cut(s) 481, 531, 1526, 1895
BspCNI CTCAG 7 cut(s) 233, 316, 932, 1932, 2126, 2236, 2536
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 3 cut(s) 610, 916, 1287
BspMI ACCTGC 1 cut(s) 131
BspOI GCTAGC 1 cut(s) 2016
BspPI GGATC 4 cut(s) 421, 1179, 1818, 2564
BspT104I TTCGAA 1 cut(s) 1999
BspT107I GGYRCC 3 cut(s) 608, 914, 1285
BspTNI GGTCTC 2 cut(s) 1691, 1773
BsrDI GCAATG 3 cut(s) 763, 2262, 2294
BsrGI TGTACA 1 cut(s) 2466
BsrI ACTGG 7 cut(s) 526, 1214, 1709, 2129, 2164, 2381, 2493
BssECI CCNNGG 3 cut(s) 841, 1319, 1460
BssSI CACGAG 1 cut(s) 1659
BssT1I CCWWGG 3 cut(s) 841, 1319, 1460
Bst2BI CACGAG 1 cut(s) 1659
Bst2UI CCWGG 3 cut(s) 1546, 1845, 2354
Bst4CI ACNGT 7 cut(s) 346, 967, 1729, 2059, 2168, 2218, 2464
Bst6I CTCTTC 2 cut(s) 663, 1233
BstAPI GCANNNNNTGC 3 cut(s) 434, 1391, 2319
BstAUI TGTACA 1 cut(s) 2466
BstBAI YACGTR 2 cut(s) 1856, 1922
BstBI TTCGAA 1 cut(s) 1999
BstC8I GCNNGC 2 cut(s) 270, 2014
BstF5I GGATG 5 cut(s) 44, 559, 1769, 1789, 2261
BstHHI GCGC 3 cut(s) 857, 1069, 2237
BstMAI GTCTC 5 cut(s) 991, 1321, 1352, 1691, 1773
BstMWI GCNNNNNNNGC 7 cut(s) 434, 1391, 1712, 2013, 2135, 2319, 2545
BstNI CCWGG 3 cut(s) 1546, 1845, 2354
BstNSI RCATGY 3 cut(s) 11, 986, 1297
BstSCI CCNGG 3 cut(s) 1544, 1843, 2352
BstSFI CTRYAG 1 cut(s) 1104
BstSLI GKGCMC 3 cut(s) 497, 2057, 2324
BstV1I GCAGC 3 cut(s) 421, 2344, 2384
BstV2I GAAGAC 2 cut(s) 11, 2377
BstX2I RGATCY 2 cut(s) 295, 1810
BstXI CCANNNNNNTGG 1 cut(s) 1926
BstYI RGATCY 2 cut(s) 295, 1810
BsuI GTATCC 1 cut(s) 2156
BsuRI GGCC 4 cut(s) 481, 531, 1526, 1895
BtrI CACGTC 1 cut(s) 687
BtsCI GGATG 5 cut(s) 44, 559, 1769, 1789, 2261
BtsIMutI CAGTG 2 cut(s) 1233, 2469
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 270, 2014
CaiI CAGNNNCTG 1 cut(s) 2243
CciI TCATGA 1 cut(s) 889
CfoI GCGC 3 cut(s) 857, 1069, 2237
Cfr13I GGNCC 3 cut(s) 120, 589, 1525
Csp6I GTAC 6 cut(s) 1076, 1244, 1286, 2169, 2397, 2467
CviQI GTAC 6 cut(s) 1076, 1244, 1286, 2169, 2397, 2467
Eam1104I CTCTTC 2 cut(s) 663, 1233
EarI CTCTTC 2 cut(s) 663, 1233
Eco130I CCWWGG 3 cut(s) 841, 1319, 1460
Eco147I AGGCCT 1 cut(s) 1895
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 2 cut(s) 1691, 1773
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 2 cut(s) 120, 589
Eco57I CTGAAG 6 cut(s) 264, 509, 637, 687, 1257, 1331
Eco72I CACGTG 2 cut(s) 1856, 1922
EcoO109I RGGNCCY 2 cut(s) 120, 1525
EcoRII CCWGG 3 cut(s) 1544, 1843, 2352
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 3 cut(s) 841, 1319, 1460
EcoT22I ATGCAT 2 cut(s) 1512, 2367
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 3 cut(s) 841, 1319, 1460
FalI AAGNNNNNCTT 6 cut(s) 635, 667, 1685, 1717, 1781, 1813
FauI CCCGC 1 cut(s) 2122
FauNDI CATATG 1 cut(s) 2282
FbaI TGATCA 1 cut(s) 2482
Fnu4HI GCNGC 3 cut(s) 435, 2358, 2373
FokI GGATG 5 cut(s) 31, 546, 1776, 1796, 2248
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 3 cut(s) 435, 2358, 2373
FspBI CTAG 6 cut(s) 842, 1814, 2013, 2030, 2189, 2232
GlaI GCGC 3 cut(s) 856, 1068, 2236
GluI GCNGC 3 cut(s) 435, 2358, 2373
GsaI CCCAGC 1 cut(s) 2303
GsuI CTGGAG 2 cut(s) 1567, 1692
HaeIII GGCC 4 cut(s) 481, 531, 1526, 1895
HhaI GCGC 3 cut(s) 857, 1069, 2237
Hin6I GCGC 3 cut(s) 855, 1067, 2235
HinP1I GCGC 3 cut(s) 855, 1067, 2235
HindIII AAGCTT 4 cut(s) 1037, 1559, 1963, 2546
HphI GGTGA 4 cut(s) 397, 1208, 2315, 2494
HpyCH4III ACNGT 7 cut(s) 346, 967, 1729, 2059, 2168, 2218, 2464
HpyCH4IV ACGT 7 cut(s) 364, 686, 1372, 1855, 1921, 2395, 2533
HpyF10VI GCNNNNNNNGC 7 cut(s) 434, 1391, 1712, 2013, 2135, 2319, 2545
HpySE526I ACGT 7 cut(s) 364, 686, 1372, 1855, 1921, 2395, 2533
HspAI GCGC 3 cut(s) 855, 1067, 2235
KpnI GGTACC 1 cut(s) 1289
Ksp22I TGATCA 1 cut(s) 2482
LmnI GCTCC 2 cut(s) 1415, 1711
Lsp1109I GCAGC 3 cut(s) 421, 2344, 2384
LweI GCATC 2 cut(s) 135, 2270
MaeI CTAG 6 cut(s) 842, 1814, 2013, 2030, 2189, 2232
MaeII ACGT 7 cut(s) 364, 686, 1372, 1855, 1921, 2395, 2533
MaeIII GTNAC 6 cut(s) 448, 2090, 2191, 2303, 2345, 2420
MfeI CAATTG 2 cut(s) 990, 1629
MflI RGATCY 2 cut(s) 295, 1810
MhlI GDGCHC 4 cut(s) 323, 497, 2057, 2324
MlyI GAGTC 4 cut(s) 1067, 1247, 1979, 2111
MmeI TCCRAC 5 cut(s) 388, 530, 1107, 1117, 1281
Mph1103I ATGCAT 2 cut(s) 1512, 2367
MseI TTAA 7 cut(s) 83, 174, 1034, 1115, 1557, 2415, 2457
MslI CAYNNNNRTG 3 cut(s) 176, 1854, 2476
MspR9I CCNGG 3 cut(s) 1546, 1845, 2354
MunI CAATTG 2 cut(s) 990, 1629
Mva1269I GAATGC 2 cut(s) 1427, 1798
MvaI CCWGG 3 cut(s) 1546, 1845, 2354
MwoI GCNNNNNNNGC 7 cut(s) 434, 1391, 1712, 2013, 2135, 2319, 2545
NdeI CATATG 1 cut(s) 2282
NheI GCTAGC 1 cut(s) 2012
NlaIV GGNNCC 3 cut(s) 610, 916, 1287
NmuCI GTSAC 5 cut(s) 448, 2090, 2303, 2345, 2420
NsiI ATGCAT 2 cut(s) 1512, 2367
NspI RCATGY 3 cut(s) 11, 986, 1297
NspV TTCGAA 1 cut(s) 1999
PagI TCATGA 1 cut(s) 889
PceI AGGCCT 1 cut(s) 1895
PciI ACATGT 2 cut(s) 7, 982
PctI GAATGC 2 cut(s) 1427, 1798
PfeI GAWTC 9 cut(s) 229, 235, 598, 886, 908, 1625, 1865, 2035, 2509
PfoI TCCNGGA 1 cut(s) 1843
PkrI GCNGC 3 cut(s) 436, 2359, 2374
PleI GAGTC 4 cut(s) 1066, 1247, 1979, 2111
PmaCI CACGTG 2 cut(s) 1856, 1922
PmlI CACGTG 2 cut(s) 1856, 1922
PpsI GAGTC 4 cut(s) 1066, 1247, 1979, 2111
Ppu21I YACGTR 2 cut(s) 1856, 1922
PpuMI RGGWCCY 1 cut(s) 120
PscI ACATGT 2 cut(s) 7, 982
PsiI TTATAA 1 cut(s) 1692
Psp1406I AACGTT 1 cut(s) 2533
Psp5II RGGWCCY 1 cut(s) 120
Psp6I CCWGG 3 cut(s) 1544, 1843, 2352
PspCI CACGTG 2 cut(s) 1856, 1922
PspFI CCCAGC 1 cut(s) 2299
PspGI CCWGG 3 cut(s) 1544, 1843, 2352
PspN4I GGNNCC 3 cut(s) 610, 916, 1287
PspPI GGNCC 3 cut(s) 120, 589, 1525
PspPPI RGGWCCY 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 2243
PsuI RGATCY 2 cut(s) 295, 1810
RsaI GTAC 6 cut(s) 1077, 1245, 1287, 2170, 2398, 2468
RsaNI GTAC 6 cut(s) 1076, 1244, 1286, 2169, 2397, 2467
RseI CAYNNNNRTG 3 cut(s) 176, 1854, 2476
SaqAI TTAA 7 cut(s) 83, 174, 1034, 1115, 1557, 2415, 2457
SatI GCNGC 3 cut(s) 435, 2358, 2373
Sau96I GGNCC 3 cut(s) 120, 589, 1525
SchI GAGTC 4 cut(s) 1067, 1247, 1979, 2111
ScrFI CCNGG 3 cut(s) 1546, 1845, 2354
SduI GDGCHC 4 cut(s) 323, 497, 2057, 2324
SfaNI GCATC 2 cut(s) 135, 2270
SfcI CTRYAG 1 cut(s) 1104
SfuI TTCGAA 1 cut(s) 1999
SinI GGWCC 2 cut(s) 120, 589
SmiMI CAYNNNNRTG 3 cut(s) 176, 1854, 2476
SmlI CTYRAG 4 cut(s) 1263, 1520, 1960, 2554
SmoI CTYRAG 4 cut(s) 1263, 1520, 1960, 2554
SseBI AGGCCT 1 cut(s) 1895
SsiI CCGC 1 cut(s) 2129
SspMI CTAG 6 cut(s) 842, 1814, 2013, 2030, 2189, 2232
StuI AGGCCT 1 cut(s) 1895
StyD4I CCNGG 3 cut(s) 1544, 1843, 2352
StyI CCWWGG 3 cut(s) 841, 1319, 1460
TaaI ACNGT 7 cut(s) 346, 967, 1729, 2059, 2168, 2218, 2464
TaiI ACGT 7 cut(s) 367, 689, 1375, 1858, 1924, 2398, 2536
TaqI TCGA 7 cut(s) 1174, 1306, 1732, 1999, 2065, 2146, 2431
TatI WGTACW 2 cut(s) 2168, 2466
TfiI GAWTC 9 cut(s) 229, 235, 598, 886, 908, 1625, 1865, 2035, 2509
Tru1I TTAA 7 cut(s) 83, 174, 1034, 1115, 1557, 2415, 2457
Tru9I TTAA 7 cut(s) 83, 174, 1034, 1115, 1557, 2415, 2457
TscAI CASTG 2 cut(s) 1240, 2469
TseFI GTSAC 5 cut(s) 448, 2090, 2303, 2345, 2420
TseI GCWGC 3 cut(s) 434, 2357, 2372
Tsp45I GTSAC 5 cut(s) 448, 2090, 2303, 2345, 2420
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 1240, 2469
VneI GTGCAC 2 cut(s) 493, 2320
VpaK11BI GGWCC 2 cut(s) 120, 589
XapI RAATTY 1 cut(s) 790
XbaI TCTAGA 1 cut(s) 1813
XceI RCATGY 3 cut(s) 11, 986, 1297
XmaJI CCTAGG 1 cut(s) 841
XspI CTAG 6 cut(s) 842, 1814, 2013, 2030, 2189, 2232
Zsp2I ATGCAT 2 cut(s) 1512, 2367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.