cysteine-rich RLK (RECEPTOR-like protein kinase) 8
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 30 - 76 | 5e-23 | gag-polypeptide of LTR copia-type |
| Retrotran_gag_2 | PF14223 | 56 - 225 | 1.8e-09 | gag-polypeptide of LTR copia-type |
| Retrotrans_gag | PF03732 | 92 - 193 | 4e-08 | Retrotransposon gag protein |
| Pol_BBD | PF22936 | 398 - 460 | 1.3e-07 | Pol polyprotein, beta-barrel domain |
| RVT_2 | PF07727 | 508 - 751 | 1e-75 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1587, 2204 |
| Acc36I | ACCTGC | 2 cut(s) | 1655, 2373 |
| AccBSI | CCGCTC | 1 cut(s) | 1967 |
| AccI | GTMKAC | 2 cut(s) | 1723, 2549 |
| AccII | CGCG | 4 cut(s) | 597, 810, 823, 989 |
| AclI | AACGTT | 1 cut(s) | 673 |
| AclWI | GGATC | 9 cut(s) | 236, 302, 869, 955, 1054, 1389, 2048, 2288, 2830 |
| AcoI | YGGCCR | 2 cut(s) | 733, 1641 |
| AcsI | RAATTY | 5 cut(s) | 414, 781, 955, 2080, 2166 |
| AcuI | CTGAAG | 3 cut(s) | 267, 2613, 2655 |
| AfaI | GTAC | 7 cut(s) | 862, 1336, 1359, 1528, 2436, 2794, 2952 |
| AfeI | AGCGCT | 1 cut(s) | 706 |
| AgeI | ACCGGT | 1 cut(s) | 791 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 887 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 885, 917, 2395, 2427 |
| Alw21I | GWGCWC | 1 cut(s) | 1235 |
| Alw26I | GTCTC | 9 cut(s) | 73, 124, 132, 417, 572, 1824, 1834, 2623, 2849 |
| AlwI | GGATC | 9 cut(s) | 236, 302, 869, 955, 1054, 1389, 2048, 2288, 2830 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2456 |
| Ama87I | CYCGRG | 1 cut(s) | 1132 |
| Aor51HI | AGCGCT | 1 cut(s) | 706 |
| ApoI | RAATTY | 5 cut(s) | 414, 781, 955, 2080, 2166 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 768, 800, 1390, 1422 |
| AsiGI | ACCGGT | 1 cut(s) | 791 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1935 |
| AspLEI | GCGC | 5 cut(s) | 590, 707, 991, 2184, 2228 |
| AspS9I | GGNCC | 9 cut(s) | 112, 283, 789, 889, 1069, 1630, 1752, 2523, 2576 |
| AsuC2I | CCSGG | 2 cut(s) | 1633, 2527 |
| AsuHPI | GGTGA | 9 cut(s) | 18, 20, 782, 808, 884, 972, 998, 1051, 1531 |
| AsuII | TTCGAA | 1 cut(s) | 724 |
| AvaI | CYCGRG | 1 cut(s) | 1132 |
| AvaII | GGWCC | 5 cut(s) | 112, 283, 789, 889, 2576 |
| BalI | TGGCCA | 1 cut(s) | 1643 |
| BanII | GRGCYC | 1 cut(s) | 532 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2536, 2568 |
| BbsI | GAAGAC | 1 cut(s) | 2925 |
| Bbv12I | GWGCWC | 1 cut(s) | 1235 |
| BccI | CCATC | 9 cut(s) | 31, 37, 235, 559, 1418, 1572, 1601, 1654, 2837 |
| BceAI | ACGGC | 2 cut(s) | 635, 2742 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2381, 2415 |
| BcnI | CCSGG | 2 cut(s) | 1633, 2527 |
| BcoDI | GTCTC | 9 cut(s) | 73, 124, 132, 417, 572, 1824, 1834, 2623, 2849 |
| BfaI | CTAG | 5 cut(s) | 116, 1173, 1287, 1920, 1962 |
| BfmI | CTRYAG | 2 cut(s) | 345, 2553 |
| BfoI | RGCGCY | 2 cut(s) | 708, 2229 |
| BfuAI | ACCTGC | 2 cut(s) | 1655, 2373 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1517 |
| BglII | AGATCT | 2 cut(s) | 367, 2110 |
| Bme18I | GGWCC | 5 cut(s) | 112, 283, 789, 889, 2576 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 887 |
| BmeT110I | CYCGRG | 1 cut(s) | 1132 |
| BmgT120I | GGNCC | 9 cut(s) | 112, 283, 789, 889, 1069, 1630, 1752, 2523, 2576 |
| BmiI | GGNNCC | 3 cut(s) | 529, 890, 1754 |
| BmsI | GCATC | 7 cut(s) | 260, 527, 790, 1035, 2162, 2200, 2401 |
| BpiI | GAAGAC | 1 cut(s) | 2925 |
| BpmI | CTGGAG | 1 cut(s) | 906 |
| Bpu14I | TTCGAA | 1 cut(s) | 724 |
| BpuEI | CTTGAG | 1 cut(s) | 2429 |
| BpuMI | CCSGG | 2 cut(s) | 1633, 2527 |
| BsaWI | WCCGGW | 1 cut(s) | 791 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1675, 1705, 2846, 2876 |
| Bse118I | RCCGGY | 1 cut(s) | 791 |
| Bse1I | ACTGG | 5 cut(s) | 736, 983, 1452, 2050, 2777 |
| Bse3DI | GCAATG | 5 cut(s) | 280, 400, 678, 2056, 2729 |
| BseGI | GGATG | 7 cut(s) | 29, 230, 499, 805, 928, 1807, 2153 |
| BseMI | GCAATG | 5 cut(s) | 280, 400, 678, 2056, 2729 |
| BseMII | CTCAG | 6 cut(s) | 451, 1056, 1322, 2271, 2529, 2631 |
| BseNI | ACTGG | 5 cut(s) | 736, 983, 1452, 2050, 2777 |
| BseRI | GAGGAG | 1 cut(s) | 1865 |
| BseYI | CCCAGC | 1 cut(s) | 38 |
| Bsh1236I | CGCG | 4 cut(s) | 597, 810, 823, 989 |
| Bsh1285I | CGRYCG | 1 cut(s) | 766 |
| BshTI | ACCGGT | 1 cut(s) | 791 |
| BsiEI | CGRYCG | 1 cut(s) | 766 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1235 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1132 |
| BsiSI | CCGG | 3 cut(s) | 792, 1633, 2526 |
| BslFI | GGGAC | 2 cut(s) | 2, 1546 |
| BsmAI | GTCTC | 9 cut(s) | 73, 124, 132, 417, 572, 1824, 1834, 2623, 2849 |
| BsmFI | GGGAC | 2 cut(s) | 2, 1546 |
| BsoBI | CYCGRG | 1 cut(s) | 1132 |
| Bsp119I | TTCGAA | 1 cut(s) | 724 |
| Bsp1286I | GDGCHC | 2 cut(s) | 532, 1235 |
| Bsp19I | CCATGG | 3 cut(s) | 714, 1789, 2247 |
| BspCNI | CTCAG | 6 cut(s) | 450, 1057, 1323, 2272, 2528, 2632 |
| BspFNI | CGCG | 4 cut(s) | 597, 810, 823, 989 |
| BspHI | TCATGA | 2 cut(s) | 352, 2785 |
| BspLI | GGNNCC | 3 cut(s) | 529, 890, 1754 |
| BspMI | ACCTGC | 2 cut(s) | 1655, 2373 |
| BspPI | GGATC | 9 cut(s) | 236, 302, 869, 955, 1054, 1389, 2048, 2288, 2830 |
| BspQI | GCTCTTC | 1 cut(s) | 1101 |
| BspT104I | TTCGAA | 1 cut(s) | 724 |
| BsrBI | CCGCTC | 1 cut(s) | 1967 |
| BsrDI | GCAATG | 5 cut(s) | 280, 400, 678, 2056, 2729 |
| BsrFI | RCCGGY | 1 cut(s) | 791 |
| BsrI | ACTGG | 5 cut(s) | 736, 983, 1452, 2050, 2777 |
| BssAI | RCCGGY | 1 cut(s) | 791 |
| BssT1I | CCWWGG | 4 cut(s) | 714, 1644, 1789, 2247 |
| Bst4CI | ACNGT | 8 cut(s) | 307, 329, 1362, 1526, 1714, 2011, 2341, 2617 |
| Bst6I | CTCTTC | 7 cut(s) | 152, 476, 657, 1029, 1101, 1388, 1800 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1736 |
| BstBI | TTCGAA | 1 cut(s) | 724 |
| BstC8I | GCNNGC | 2 cut(s) | 1518, 1751 |
| BstDEI | CTNAG | 8 cut(s) | 371, 437, 1065, 1331, 2280, 2515, 2572, 2640 |
| BstDSI | CCRYGG | 5 cut(s) | 595, 714, 1744, 1789, 2247 |
| BstEII | GGTNACC | 1 cut(s) | 770 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2460 |
| BstF5I | GGATG | 7 cut(s) | 29, 230, 499, 805, 928, 1807, 2153 |
| BstFNI | CGCG | 4 cut(s) | 597, 810, 823, 989 |
| BstH2I | RGCGCY | 2 cut(s) | 708, 2229 |
| BstHHI | GCGC | 5 cut(s) | 590, 707, 991, 2184, 2228 |
| BstMAI | GTCTC | 9 cut(s) | 73, 124, 132, 417, 572, 1824, 1834, 2623, 2849 |
| BstMCI | CGRYCG | 1 cut(s) | 766 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 594, 647, 653, 716, 759, 1279, 1517, 1736, 2946 |
| BstNSI | RCATGY | 1 cut(s) | 900 |
| BstPI | GGTNACC | 1 cut(s) | 770 |
| BstSFI | CTRYAG | 2 cut(s) | 345, 2553 |
| BstUI | CGCG | 4 cut(s) | 597, 810, 823, 989 |
| BstV2I | GAAGAC | 1 cut(s) | 2925 |
| BstX2I | RGATCY | 5 cut(s) | 367, 1381, 2110, 2293, 2835 |
| BstYI | RGATCY | 5 cut(s) | 367, 1381, 2110, 2293, 2835 |
| BtgI | CCRYGG | 5 cut(s) | 595, 714, 1744, 1789, 2247 |
| BtgZI | GCGATG | 1 cut(s) | 412 |
| BtsCI | GGATG | 7 cut(s) | 29, 230, 499, 805, 928, 1807, 2153 |
| BtsI | GCAGTG | 2 cut(s) | 972, 1916 |
| BtsIMutI | CAGTG | 7 cut(s) | 303, 972, 1445, 1916, 2346, 2784, 2856 |
| BveI | ACCTGC | 2 cut(s) | 1655, 2373 |
| Cac8I | GCNNGC | 2 cut(s) | 1518, 1751 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2456 |
| CciI | TCATGA | 2 cut(s) | 352, 2785 |
| CfoI | GCGC | 5 cut(s) | 590, 707, 991, 2184, 2228 |
| Cfr10I | RCCGGY | 1 cut(s) | 791 |
| Cfr13I | GGNCC | 9 cut(s) | 112, 283, 789, 889, 1069, 1630, 1752, 2523, 2576 |
| Cfr42I | CCGCGG | 1 cut(s) | 598 |
| CpoI | CGGWCCG | 1 cut(s) | 789 |
| CsiI | ACCWGGT | 1 cut(s) | 1008 |
| Csp6I | GTAC | 7 cut(s) | 861, 1335, 1358, 1527, 2435, 2793, 2951 |
| CspAI | ACCGGT | 1 cut(s) | 791 |
| CspI | CGGWCCG | 1 cut(s) | 789 |
| CviQI | GTAC | 7 cut(s) | 861, 1335, 1358, 1527, 2435, 2793, 2951 |
| DdeI | CTNAG | 8 cut(s) | 371, 437, 1065, 1331, 2280, 2515, 2572, 2640 |
| DraI | TTTAAA | 1 cut(s) | 2262 |
| DriI | GACNNNNNGTC | 1 cut(s) | 887 |
| EaeI | YGGCCR | 2 cut(s) | 733, 1641 |
| Eam1104I | CTCTTC | 7 cut(s) | 152, 476, 657, 1029, 1101, 1388, 1800 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 887 |
| EarI | CTCTTC | 7 cut(s) | 152, 476, 657, 1029, 1101, 1388, 1800 |
| Eco130I | CCWWGG | 4 cut(s) | 714, 1644, 1789, 2247 |
| Eco147I | AGGCCT | 1 cut(s) | 1511 |
| Eco24I | GRGCYC | 1 cut(s) | 532 |
| Eco32I | GATATC | 1 cut(s) | 2959 |
| Eco47I | GGWCC | 5 cut(s) | 112, 283, 789, 889, 2576 |
| Eco47III | AGCGCT | 1 cut(s) | 706 |
| Eco57I | CTGAAG | 3 cut(s) | 267, 2613, 2655 |
| Eco88I | CYCGRG | 1 cut(s) | 1132 |
| Eco91I | GGTNACC | 1 cut(s) | 770 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2460 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2576 |
| EcoO65I | GGTNACC | 1 cut(s) | 770 |
| EcoRV | GATATC | 1 cut(s) | 2959 |
| EcoT14I | CCWWGG | 4 cut(s) | 714, 1644, 1789, 2247 |
| EcoT22I | ATGCAT | 3 cut(s) | 1267, 1305, 2394 |
| EcoT38I | GRGCYC | 1 cut(s) | 532 |
| ErhI | CCWWGG | 4 cut(s) | 714, 1644, 1789, 2247 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2906, 2938 |
| FaqI | GGGAC | 2 cut(s) | 2, 1546 |
| FauI | CCCGC | 4 cut(s) | 602, 828, 1193, 1199 |
| FblI | GTMKAC | 2 cut(s) | 1723, 2549 |
| FokI | GGATG | 7 cut(s) | 16, 217, 506, 812, 915, 1814, 2140 |
| FriOI | GRGCYC | 1 cut(s) | 532 |
| FspBI | CTAG | 5 cut(s) | 116, 1173, 1287, 1920, 1962 |
| GlaI | GCGC | 5 cut(s) | 589, 706, 990, 2183, 2227 |
| GsaI | CCCAGC | 1 cut(s) | 42 |
| GsuI | CTGGAG | 1 cut(s) | 906 |
| HaeII | RGCGCY | 2 cut(s) | 708, 2229 |
| HapII | CCGG | 3 cut(s) | 792, 1633, 2526 |
| HhaI | GCGC | 5 cut(s) | 590, 707, 991, 2184, 2228 |
| Hin6I | GCGC | 5 cut(s) | 588, 705, 989, 2182, 2226 |
| HinP1I | GCGC | 5 cut(s) | 588, 705, 989, 2182, 2226 |
| HincII | GTYRAC | 3 cut(s) | 301, 1774, 2676 |
| HindII | GTYRAC | 3 cut(s) | 301, 1774, 2676 |
| HindIII | AAGCTT | 1 cut(s) | 1899 |
| HinfI | GANTC | 5 cut(s) | 616, 692, 1130, 2513, 2935 |
| HpaI | GTTAAC | 1 cut(s) | 301 |
| HpaII | CCGG | 3 cut(s) | 792, 1633, 2526 |
| HphI | GGTGA | 9 cut(s) | 18, 20, 782, 808, 884, 972, 998, 1051, 1531 |
| Hpy166II | GTNNAC | 6 cut(s) | 301, 1724, 1774, 2534, 2550, 2676 |
| Hpy8I | GTNNAC | 6 cut(s) | 301, 1724, 1774, 2534, 2550, 2676 |
| HpyCH4III | ACNGT | 8 cut(s) | 307, 329, 1362, 1526, 1714, 2011, 2341, 2617 |
| HpyCH4IV | ACGT | 6 cut(s) | 15, 673, 2254, 2605, 2686, 2791 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 594, 647, 653, 716, 759, 1279, 1517, 1736, 2946 |
| HpyF3I | CTNAG | 8 cut(s) | 371, 437, 1065, 1331, 2280, 2515, 2572, 2640 |
| HpySE526I | ACGT | 6 cut(s) | 15, 673, 2254, 2605, 2686, 2791 |
| HspAI | GCGC | 5 cut(s) | 588, 705, 989, 2182, 2226 |
| KspAI | GTTAAC | 1 cut(s) | 301 |
| KspI | CCGCGG | 1 cut(s) | 598 |
| LguI | GCTCTTC | 1 cut(s) | 1101 |
| LmnI | GCTCC | 6 cut(s) | 229, 527, 1456, 1852, 2458, 2660 |
| LweI | GCATC | 7 cut(s) | 260, 527, 790, 1035, 2162, 2200, 2401 |
| MabI | ACCWGGT | 1 cut(s) | 1008 |
| MaeI | CTAG | 5 cut(s) | 116, 1173, 1287, 1920, 1962 |
| MaeII | ACGT | 6 cut(s) | 15, 673, 2254, 2605, 2686, 2791 |
| MaeIII | GTNAC | 7 cut(s) | 770, 1153, 1708, 2283, 2510, 2741, 2816 |
| MbiI | CCGCTC | 1 cut(s) | 1967 |
| MfeI | CAATTG | 2 cut(s) | 1189, 2882 |
| MflI | RGATCY | 5 cut(s) | 367, 1381, 2110, 2293, 2835 |
| MhlI | GDGCHC | 2 cut(s) | 532, 1235 |
| MlsI | TGGCCA | 1 cut(s) | 1643 |
| MluNI | TGGCCA | 1 cut(s) | 1643 |
| MlyI | GAGTC | 3 cut(s) | 701, 1124, 2507 |
| MmeI | TCCRAC | 3 cut(s) | 134, 1485, 2299 |
| Mox20I | TGGCCA | 1 cut(s) | 1643 |
| Mph1103I | ATGCAT | 3 cut(s) | 1267, 1305, 2394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1935 |
| MscI | TGGCCA | 1 cut(s) | 1643 |
| MseI | TTAA | 9 cut(s) | 180, 300, 572, 1377, 2039, 2076, 2261, 2378, 2585 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1658, 2930 |
| Msp20I | TGGCCA | 1 cut(s) | 1643 |
| MspA1I | CMGCKG | 3 cut(s) | 597, 689, 2633 |
| MspI | CCGG | 3 cut(s) | 792, 1633, 2526 |
| MunI | CAATTG | 2 cut(s) | 1189, 2882 |
| MvnI | CGCG | 4 cut(s) | 597, 810, 823, 989 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 594, 647, 653, 716, 759, 1279, 1517, 1736, 2946 |
| NciI | CCSGG | 2 cut(s) | 1633, 2527 |
| NcoI | CCATGG | 3 cut(s) | 714, 1789, 2247 |
| NlaIV | GGNNCC | 3 cut(s) | 529, 890, 1754 |
| NmeAIII | GCCGAG | 1 cut(s) | 177 |
| NmuCI | GTSAC | 4 cut(s) | 770, 2510, 2741, 2816 |
| NsiI | ATGCAT | 3 cut(s) | 1267, 1305, 2394 |
| NspI | RCATGY | 1 cut(s) | 900 |
| NspV | TTCGAA | 1 cut(s) | 724 |
| PaeR7I | CTCGAG | 1 cut(s) | 1132 |
| PagI | TCATGA | 2 cut(s) | 352, 2785 |
| PasI | CCCWGGG | 1 cut(s) | 1553 |
| PceI | AGGCCT | 1 cut(s) | 1511 |
| PciSI | GCTCTTC | 1 cut(s) | 1101 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 772, 1397 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1935 |
| PfeI | GAWTC | 2 cut(s) | 616, 2935 |
| PflFI | GACNNNGTC | 1 cut(s) | 281 |
| PfoI | TCCNGGA | 1 cut(s) | 877 |
| PinAI | ACCGGT | 1 cut(s) | 791 |
| PleI | GAGTC | 3 cut(s) | 700, 1124, 2507 |
| PpsI | GAGTC | 3 cut(s) | 700, 1124, 2507 |
| PpuMI | RGGWCCY | 1 cut(s) | 2576 |
| PsiI | TTATAA | 2 cut(s) | 1587, 2204 |
| Psp1406I | AACGTT | 1 cut(s) | 673 |
| Psp5II | RGGWCCY | 1 cut(s) | 2576 |
| PspEI | GGTNACC | 1 cut(s) | 770 |
| PspFI | CCCAGC | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 3 cut(s) | 529, 890, 1754 |
| PspPI | GGNCC | 9 cut(s) | 112, 283, 789, 889, 1069, 1630, 1752, 2523, 2576 |
| PspPPI | RGGWCCY | 1 cut(s) | 2576 |
| PspXI | VCTCGAGB | 1 cut(s) | 1132 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2552, 2584 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2456 |
| PsuI | RGATCY | 5 cut(s) | 367, 1381, 2110, 2293, 2835 |
| PsyI | GACNNNGTC | 1 cut(s) | 281 |
| PvuII | CAGCTG | 1 cut(s) | 2633 |
| RsaI | GTAC | 7 cut(s) | 862, 1336, 1359, 1528, 2436, 2794, 2952 |
| RsaNI | GTAC | 7 cut(s) | 861, 1335, 1358, 1527, 2435, 2793, 2951 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1658, 2930 |
| Rsr2I | CGGWCCG | 1 cut(s) | 789 |
| RsrII | CGGWCCG | 1 cut(s) | 789 |
| SacII | CCGCGG | 1 cut(s) | 598 |
| SapI | GCTCTTC | 1 cut(s) | 1101 |
| SaqAI | TTAA | 9 cut(s) | 180, 300, 572, 1377, 2039, 2076, 2261, 2378, 2585 |
| Sau96I | GGNCC | 9 cut(s) | 112, 283, 789, 889, 1069, 1630, 1752, 2523, 2576 |
| SchI | GAGTC | 3 cut(s) | 701, 1124, 2507 |
| SduI | GDGCHC | 2 cut(s) | 532, 1235 |
| SexAI | ACCWGGT | 1 cut(s) | 1008 |
| SfaNI | GCATC | 7 cut(s) | 260, 527, 790, 1035, 2162, 2200, 2401 |
| SfcI | CTRYAG | 2 cut(s) | 345, 2553 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1517 |
| Sfr274I | CTCGAG | 1 cut(s) | 1132 |
| Sfr303I | CCGCGG | 1 cut(s) | 598 |
| SfuI | TTCGAA | 1 cut(s) | 724 |
| SgrBI | CCGCGG | 1 cut(s) | 598 |
| SinI | GGWCC | 5 cut(s) | 112, 283, 789, 889, 2576 |
| SlaI | CTCGAG | 1 cut(s) | 1132 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1658, 2930 |
| SmlI | CTYRAG | 2 cut(s) | 1132, 2444 |
| SmoI | CTYRAG | 2 cut(s) | 1132, 2444 |
| SseBI | AGGCCT | 1 cut(s) | 1511 |
| SspMI | CTAG | 5 cut(s) | 116, 1173, 1287, 1920, 1962 |
| StuI | AGGCCT | 1 cut(s) | 1511 |
| StyI | CCWWGG | 4 cut(s) | 714, 1644, 1789, 2247 |
| TaaI | ACNGT | 8 cut(s) | 307, 329, 1362, 1526, 1714, 2011, 2341, 2617 |
| TaiI | ACGT | 6 cut(s) | 18, 676, 2257, 2608, 2689, 2794 |
| TaqI | TCGA | 8 cut(s) | 724, 740, 838, 1133, 1576, 1767, 1939, 2401 |
| TaqII | GACCGA | 1 cut(s) | 789 |
| TatI | WGTACW | 1 cut(s) | 1357 |
| TauI | GCSGC | 3 cut(s) | 735, 813, 856 |
| TfiI | GAWTC | 2 cut(s) | 616, 2935 |
| Tru1I | TTAA | 9 cut(s) | 180, 300, 572, 1377, 2039, 2076, 2261, 2378, 2585 |
| Tru9I | TTAA | 9 cut(s) | 180, 300, 572, 1377, 2039, 2076, 2261, 2378, 2585 |
| TscAI | CASTG | 7 cut(s) | 310, 979, 1452, 1916, 2346, 2784, 2856 |
| TseFI | GTSAC | 4 cut(s) | 770, 2510, 2741, 2816 |
| Tsp45I | GTSAC | 4 cut(s) | 770, 2510, 2741, 2816 |
| TspDTI | ATGAA | 9 cut(s) | 279, 510, 629, 667, 1818, 2360, 2774, 2802, 2914 |
| TspGWI | ACGGA | 2 cut(s) | 1469, 1706 |
| TspRI | CASTG | 7 cut(s) | 310, 979, 1452, 1916, 2346, 2784, 2856 |
| Tth111I | GACNNNGTC | 1 cut(s) | 281 |
| VpaK11BI | GGWCC | 5 cut(s) | 112, 283, 789, 889, 2576 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2460 |
| XapI | RAATTY | 5 cut(s) | 414, 781, 955, 2080, 2166 |
| XbaI | TCTAGA | 3 cut(s) | 1172, 1919, 1961 |
| XceI | RCATGY | 1 cut(s) | 900 |
| XhoI | CTCGAG | 1 cut(s) | 1132 |
| XmiI | GTMKAC | 2 cut(s) | 1723, 2549 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1935 |
| XspI | CTAG | 5 cut(s) | 116, 1173, 1287, 1920, 1962 |
| Zsp2I | ATGCAT | 3 cut(s) | 1267, 1305, 2394 |