FvH4_6g34901

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000071
Physical Location & Seq
Reverse (-)
27583294 .. 27585280
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34901.t1

Sequence Viewer

Length: 1908 bp
ATGGAAGACACTTTTCATCATCCACCGAGCCAAATATCCTCTACCTGCCCAGAATCTACTCTACAAGCCCAGCCCATTCCGTTTCCTTGCTCAATCAAGTACAATGATCCCTTCAGTTTATCCAAGTCTCCAACGCCTCCATCCCATTCTCAGCCTGCTTTCAATGTTCCTGATATCTCACCTTCTGCTCCGCGGGAAAATTCCGACGCCAACGTCCCTCCTCACGGTGACAGTGACGTCAATGAACAGCGTCCTCTCTACCCACTCACTTCTGCATCTTCTTCTCCTGCCCCAAACATCACCATTGTTCCTCTTCCTGTGTCTGTTCCTCCAGCGTTTGCTGGCGACCCAGACGGCGACGACGCCAATCATGGCAGCGACGCCAATCACAGCTGCGATACTCATCACGGCGGTGATGCCCATCACGGCAGCGACGCCGATCCCCTTCTTCTCCACCCACAAGCCACCGAACCCAATATTCTTCCCATTGCTCCAAATAATCCTCCATTGTTTCCCGATCAGCCTGCACCCATTCCGGATCTTCGACGTTCTCAACGCACAAGGCAGCCCAATGTTCGTCTTCGGGACTTCGTCTGCTCGCAGGTGATTCTGCCTCCACACCACCATTCATCTGCCTCCCCAAGTCCTCCACCAGTCGGGATGAGGGAACCGACCTCTTATGATGTTGTTGCAGCCGATCCGAAATGGCAGGAAGCTATGAATTCCGAGCTTCAAGCTCTTATTGAGAATCAGACATGGAGTCTAGTTCCTTTACCTACTGGCAAAAGCCCCATTAGTTGCAAATGGGTCTATAAGATTAAGCGTAAGGCTGATGGTTCTGTCGAGCGTTATAAGGCTCGCCTTGTTGCTCGAGGTTTTACTCAGACTGCAGGTATCGATTATCATGATACTTTTTCTCCTACTGCCAAAATGATAACTATCCACTGCCTTCTTGCTGTTGCTGCAAGTCAAAATTGGTCTCTACATCAATTAGATGTTAATAATGCTTTCCTGAATGGTGATTTGTTGGAAGAAATTTATATGTCTCCTCCTCCTGGTCTTCGGCGACAGGGGGAGAATCTTGTGTGTCGCCTCCACAAGTCGTTATATGGACTGAAACAAGCTTCCCGTCAATGGTTTTCTAAGTTTACCAAGGTCGTTCTTGTTGCTGGTTTTTCTCAGTCCAAATCAGACTACTCTTTGTTTGTCCGCAAAAATGGTACATCTTTGACTGTCTTGTTAATCTATGTGGACGATATTCTGATCACAGGGAACAATATGGAGTCTATTAATGCCTTGAAGCAGTTCCTTCATACTCGTTTCCGTATCAAGGACCTTGGTGATCTGAAATTTTTCCTAGGCATTGAAGTAGCTCGTTCCAAGAAAGGGATTTACATATCTCAGCGTAAGTATGCATTGGAGATTATTAAAGACACCGGTTTCTTAGGTGTTAAACCTGTTGATTTTCGCATGGAAGAATCCAAGTTGTCAAATAAAGGAGAGCCGCTCAAGGATCCTGCTATATATCGGCGTTTGGTTGGAAGACTTATATATCTCACAATCACCAGACCTGACATTACTTATTCTGTTCATATCCTTAGCAGATTTATGCATGACCCTCGCCAGCCTCACATGGCAGCTGCGCTTCGGGTGGTGAAGTATTTAAAATCATCTCCTGGTCAAGGTTTGTTTTTGAGTTCCAACAATGATTTAAGTTTAAAGGCTTTCTATGATTCTGATTGGGCAGGCTGCCCTATTACTCGTCGTTCTACGACTGGATATTGTGTTTTCTTAGGCAATTCCTTGATCTCATGGTGCACCAAGAGGCAAAAGACAGTATCTTTATCAAGCGCCGAAGCAGAATATAGAGCCATGGCTGGTACATGTTGTGAACTTACTTGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

636

Amino Acids

70.4

Weight (kDa)

8.57

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 250 - 487 1.8e-75 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 852
AarI CACCTGC 1 cut(s) 592
AasI GACNNNNNNGTC 2 cut(s) 212, 236
AatII GACGTC 1 cut(s) 240
Acc36I ACCTGC 3 cut(s) 53, 592, 881
AccBSI CCGCTC 1 cut(s) 1507
AccII CGCG 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 5 cut(s) 191, 193, 411, 1210, 1505
AclWI GGATC 6 cut(s) 101, 434, 546, 692, 1508, 1521
AcsI RAATTY 4 cut(s) 199, 721, 1035, 1349
AcuI CTGAAG 1 cut(s) 97
AcyI GRCGYC 5 cut(s) 207, 237, 363, 381, 435
AfaI GTAC 3 cut(s) 101, 1222, 1882
AfiI CCNNNNNNNGG 7 cut(s) 224, 656, 1055, 1134, 1330, 1386, 1682
AflIII ACRYGT 1 cut(s) 1883
AgeI ACCGGT 1 cut(s) 1436
AgsI TTSAA 4 cut(s) 163, 734, 1300, 1367
AhdI GACNNNNNGTC 1 cut(s) 759
AjnI CCWGG 2 cut(s) 1054, 1675
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 7 cut(s) 393, 716, 730, 737, 1124, 1373, 1640
AluI AGCT 7 cut(s) 393, 716, 730, 737, 1124, 1373, 1640
Alw21I GWGCWC 1 cut(s) 1820
Alw26I GTCTC 3 cut(s) 132, 984, 1050
Alw44I GTGCAC 1 cut(s) 1816
AlwI GGATC 6 cut(s) 101, 434, 546, 692, 1508, 1521
Ama87I CYCGRG 1 cut(s) 870
Aor13HI TCCGGA 1 cut(s) 535
ApaLI GTGCAC 1 cut(s) 1816
ApeKI GCWGC 9 cut(s) 375, 393, 429, 565, 692, 962, 1637, 1640, 1749
ApoI RAATTY 4 cut(s) 199, 721, 1035, 1349
AseI ATTAAT 1 cut(s) 1290
AsiGI ACCGGT 1 cut(s) 1436
Asp700I GAANNNNTTC 2 cut(s) 1304, 1352
AspA2I CCTAGG 1 cut(s) 1357
AspLEI GCGC 2 cut(s) 1645, 1853
AspS9I GGNCC 1 cut(s) 1333
AsuHPI GGTGA 9 cut(s) 171, 239, 292, 425, 616, 1031, 1352, 1555, 1666
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 1 cut(s) 1333
AvrII CCTAGG 1 cut(s) 1357
BaeGI GKGCMC 1 cut(s) 1820
BamHI GGATCC 1 cut(s) 1513
BbsI GAAGAC 4 cut(s) 12, 572, 1052, 1549
Bbv12I GWGCWC 1 cut(s) 1820
BbvI GCAGC 9 cut(s) 380, 387, 441, 577, 704, 949, 1627, 1649, 1736
BccI CCATC 3 cut(s) 148, 429, 827
BceAI ACGGC 3 cut(s) 370, 424, 442
BcgI CGANNNNNNTGC 4 cut(s) 506, 540, 1601, 1635
BciT130I CCWGG 2 cut(s) 1056, 1677
BclI TGATCA 1 cut(s) 1263
BcoDI GTCTC 3 cut(s) 132, 984, 1050
BfaI CTAG 2 cut(s) 764, 1358
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 1 cut(s) 1854
BfuAI ACCTGC 3 cut(s) 53, 592, 881
BlnI CCTAGG 1 cut(s) 1357
Bme1390I CCNGG 2 cut(s) 1056, 1677
Bme18I GGWCC 1 cut(s) 1333
BmeRI GACNNNNNGTC 1 cut(s) 759
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 1 cut(s) 1333
BmiI GGNNCC 2 cut(s) 669, 1515
BmrFI CCNGG 2 cut(s) 1056, 1677
BmsI GCATC 2 cut(s) 284, 406
BpiI GAAGAC 4 cut(s) 12, 572, 1052, 1549
BplI GAGNNNNNCTC 2 cut(s) 1491, 1523
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 1598
BpuEI CTTGAG 1 cut(s) 1493
Bsa29I ATCGAT 1 cut(s) 897
BsaBI GATNNNNATC 3 cut(s) 402, 420, 938
BsaHI GRCGYC 5 cut(s) 207, 237, 363, 381, 435
BsaI GGTCTC 1 cut(s) 984
BsaJI CCNNGG 5 cut(s) 191, 1152, 1336, 1357, 1872
BsaWI WCCGGW 2 cut(s) 535, 1436
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bsc4I CCNNNNNNNGG 7 cut(s) 224, 656, 1055, 1134, 1330, 1386, 1682
Bse118I RCCGGY 1 cut(s) 1436
Bse1I ACTGG 3 cut(s) 653, 784, 1780
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 3 cut(s) 402, 420, 938
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 2 cut(s) 1056, 1677
BseCI ATCGAT 1 cut(s) 897
BseDI CCNNGG 5 cut(s) 191, 1152, 1336, 1357, 1872
BseGI GGATG 3 cut(s) 19, 140, 666
BseJI GATNNNNATC 3 cut(s) 402, 420, 938
BseLI CCNNNNNNNGG 7 cut(s) 224, 656, 1055, 1134, 1330, 1386, 1682
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 4 cut(s) 164, 896, 1193, 1415
BseNI ACTGG 3 cut(s) 653, 784, 1780
BseRI GAGGAG 3 cut(s) 210, 1038, 1041
BseSI GKGCMC 1 cut(s) 1820
BseXI GCAGC 9 cut(s) 380, 387, 441, 577, 704, 949, 1627, 1649, 1736
BseYI CCCAGC 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 193
BshTI ACCGGT 1 cut(s) 1436
BshVI ATCGAT 1 cut(s) 897
BsiHKAI GWGCWC 1 cut(s) 1820
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 2 cut(s) 536, 1437
BslFI GGGAC 2 cut(s) 200, 599
BslI CCNNNNNNNGG 7 cut(s) 224, 656, 1055, 1134, 1330, 1386, 1682
BsmAI GTCTC 3 cut(s) 132, 984, 1050
BsmFI GGGAC 2 cut(s) 200, 599
Bso31I GGTCTC 1 cut(s) 984
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 1820
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
Bsp19I CCATGG 1 cut(s) 1872
BspACI CCGC 5 cut(s) 191, 193, 411, 1210, 1505
BspCNI CTCAG 4 cut(s) 163, 895, 1192, 1414
BspDI ATCGAT 1 cut(s) 897
BspEI TCCGGA 1 cut(s) 535
BspFNI CGCG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 2 cut(s) 669, 1515
BspMAI CTGCAG 1 cut(s) 892
BspMI ACCTGC 3 cut(s) 53, 592, 881
BspPI GGATC 6 cut(s) 101, 434, 546, 692, 1508, 1521
BspTNI GGTCTC 1 cut(s) 984
BsrBI CCGCTC 1 cut(s) 1507
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 1436
BsrI ACTGG 3 cut(s) 653, 784, 1780
BssAI RCCGGY 1 cut(s) 1436
BssECI CCNNGG 5 cut(s) 191, 1152, 1336, 1357, 1872
BssMI GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
BssNI GRCGYC 5 cut(s) 207, 237, 363, 381, 435
BssT1I CCWWGG 4 cut(s) 1152, 1336, 1357, 1872
Bst2UI CCWGG 2 cut(s) 1056, 1677
Bst4CI ACNGT 4 cut(s) 227, 233, 1234, 1837
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 5 cut(s) 207, 237, 363, 381, 435
BstC8I GCNNGC 7 cut(s) 156, 343, 525, 599, 859, 1625, 1747
BstDEI CTNAG 8 cut(s) 150, 882, 1143, 1179, 1401, 1444, 1598, 1792
BstDSI CCRYGG 2 cut(s) 191, 1872
BstENI CCTNNNNNAGG 1 cut(s) 1680
BstF5I GGATG 3 cut(s) 19, 140, 666
BstFNI CGCG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 1854
BstHHI GCGC 2 cut(s) 1645, 1853
BstKTI GATC 9 cut(s) 109, 442, 520, 541, 700, 1266, 1345, 1516, 1809
BstMAI GTCTC 3 cut(s) 132, 984, 1050
BstMBI GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
BstMWI GCNNNNNNNGC 1 cut(s) 962
BstNI CCWGG 2 cut(s) 1056, 1677
BstNSI RCATGY 1 cut(s) 1887
BstSCI CCNGG 2 cut(s) 1054, 1675
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 1 cut(s) 1820
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 9 cut(s) 380, 387, 441, 577, 704, 949, 1627, 1649, 1736
BstV2I GAAGAC 4 cut(s) 12, 572, 1052, 1549
BstX2I RGATCY 2 cut(s) 538, 1513
BstYI RGATCY 2 cut(s) 538, 1513
Bsu15I ATCGAT 1 cut(s) 897
BsuTUI ATCGAT 1 cut(s) 897
BtgI CCRYGG 2 cut(s) 191, 1872
BtsCI GGATG 3 cut(s) 19, 140, 666
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 2 cut(s) 238, 943
BveI ACCTGC 3 cut(s) 53, 592, 881
Cac8I GCNNGC 7 cut(s) 156, 343, 525, 599, 859, 1625, 1747
CciI TCATGA 1 cut(s) 904
CfoI GCGC 2 cut(s) 1645, 1853
Cfr10I RCCGGY 1 cut(s) 1436
Cfr13I GGNCC 1 cut(s) 1333
Cfr42I CCGCGG 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 897
CseI GACGC 5 cut(s) 215, 239, 371, 389, 443
Csp6I GTAC 3 cut(s) 100, 1221, 1881
CspAI ACCGGT 1 cut(s) 1436
CviAII CATG 9 cut(s) 371, 756, 905, 1471, 1613, 1633, 1812, 1873, 1884
CviQI GTAC 3 cut(s) 100, 1221, 1881
DdeI CTNAG 8 cut(s) 150, 882, 1143, 1179, 1401, 1444, 1598, 1792
DpnI GATC 9 cut(s) 108, 441, 519, 540, 699, 1265, 1344, 1515, 1808
DpnII GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
DraI TTTAAA 2 cut(s) 1665, 1719
DrdI GACNNNNNNGTC 2 cut(s) 212, 236
DriI GACNNNNNGTC 1 cut(s) 759
DseDI GACNNNNNNGTC 2 cut(s) 212, 236
Eam1104I CTCTTC 1 cut(s) 318
Eam1105I GACNNNNNGTC 1 cut(s) 759
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 4 cut(s) 1152, 1336, 1357, 1872
Eco31I GGTCTC 1 cut(s) 984
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 1333
Eco57I CTGAAG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 870
EcoNI CCTNNNNNAGG 1 cut(s) 1680
EcoO109I RGGNCCY 1 cut(s) 1333
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 1054, 1675
EcoRV GATATC 1 cut(s) 175
EcoT14I CCWWGG 4 cut(s) 1152, 1336, 1357, 1872
EcoT22I ATGCAT 2 cut(s) 1417, 1614
ErhI CCWWGG 4 cut(s) 1152, 1336, 1357, 1872
FaeI CATG 9 cut(s) 374, 759, 908, 1474, 1616, 1636, 1815, 1876, 1887
FaqI GGGAC 2 cut(s) 200, 599
FatI CATG 9 cut(s) 370, 755, 904, 1470, 1612, 1632, 1811, 1872, 1883
FauI CCCGC 1 cut(s) 186
FbaI TGATCA 1 cut(s) 1263
FokI GGATG 3 cut(s) 6, 127, 673
FspBI CTAG 2 cut(s) 764, 1358
GlaI GCGC 2 cut(s) 1644, 1852
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 1854
HapII CCGG 2 cut(s) 536, 1437
HgaI GACGC 5 cut(s) 215, 239, 371, 389, 443
HhaI GCGC 2 cut(s) 1645, 1853
Hin1I GRCGYC 5 cut(s) 207, 237, 363, 381, 435
Hin1II CATG 9 cut(s) 374, 759, 908, 1474, 1616, 1636, 1815, 1876, 1887
Hin6I GCGC 2 cut(s) 1643, 1851
HinP1I GCGC 2 cut(s) 1643, 1851
HindIII AAGCTT 1 cut(s) 1122
HinfI GANTC 8 cut(s) 53, 607, 748, 760, 1078, 1283, 1478, 1733
HpaII CCGG 2 cut(s) 536, 1437
HphI GGTGA 9 cut(s) 171, 239, 292, 425, 616, 1031, 1352, 1555, 1666
Hpy166II GTNNAC 4 cut(s) 1149, 1252, 1818, 1892
Hpy188I TCNGA 9 cut(s) 205, 702, 727, 753, 885, 1192, 1263, 1347, 1738
Hpy188III TCNNGA 7 cut(s) 170, 515, 536, 584, 658, 905, 1012
Hpy8I GTNNAC 4 cut(s) 1149, 1252, 1818, 1892
Hpy99I CGWCG 7 cut(s) 209, 362, 365, 383, 437, 549, 1767
HpyAV CCTTC 5 cut(s) 121, 192, 455, 959, 1319
HpyCH4III ACNGT 4 cut(s) 227, 233, 1234, 1837
HpyCH4IV ACGT 3 cut(s) 213, 237, 547
HpyCH4V TGCA 9 cut(s) 275, 527, 692, 801, 890, 965, 1415, 1612, 1818
HpyF10VI GCNNNNNNNGC 1 cut(s) 962
HpyF3I CTNAG 8 cut(s) 150, 882, 1143, 1179, 1401, 1444, 1598, 1792
HpySE526I ACGT 3 cut(s) 213, 237, 547
Hsp92I GRCGYC 5 cut(s) 207, 237, 363, 381, 435
Hsp92II CATG 9 cut(s) 374, 759, 908, 1474, 1616, 1636, 1815, 1876, 1887
HspAI GCGC 2 cut(s) 1643, 1851
Kpn2I TCCGGA 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 1263
KspI CCGCGG 1 cut(s) 194
Kzo9I GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
LmnI GCTCC 2 cut(s) 193, 496
Lsp1109I GCAGC 9 cut(s) 380, 387, 441, 577, 704, 949, 1627, 1649, 1736
LweI GCATC 2 cut(s) 284, 406
MaeI CTAG 2 cut(s) 764, 1358
MaeII ACGT 3 cut(s) 213, 237, 547
MaeIII GTNAC 2 cut(s) 227, 233
MalI GATC 9 cut(s) 108, 441, 519, 540, 699, 1265, 1344, 1515, 1808
MbiI CCGCTC 1 cut(s) 1507
MboI GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
MflI RGATCY 2 cut(s) 538, 1513
MhlI GDGCHC 1 cut(s) 1820
MluCI AATT 7 cut(s) 199, 721, 973, 989, 1035, 1349, 1798
MlyI GAGTC 2 cut(s) 769, 1292
MmeI TCCRAC 5 cut(s) 155, 228, 1008, 1519, 1725
Mph1103I ATGCAT 2 cut(s) 1417, 1614
MroI TCCGGA 1 cut(s) 535
MroXI GAANNNNTTC 2 cut(s) 1304, 1352
MseI TTAA 9 cut(s) 819, 999, 1241, 1290, 1428, 1452, 1664, 1712, 1718
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 3 cut(s) 193, 393, 1640
MspI CCGG 2 cut(s) 536, 1437
MspR9I CCNGG 2 cut(s) 1056, 1677
MvaI CCWGG 2 cut(s) 1056, 1677
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 962
NcoI CCATGG 1 cut(s) 1872
NdeII GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
NlaIII CATG 9 cut(s) 374, 759, 908, 1474, 1616, 1636, 1815, 1876, 1887
NlaIV GGNNCC 2 cut(s) 669, 1515
NmuCI GTSAC 2 cut(s) 227, 233
NsiI ATGCAT 2 cut(s) 1417, 1614
NspI RCATGY 1 cut(s) 1887
OliI CACNNNNGTG 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 870
PagI TCATGA 1 cut(s) 904
PaqCI CACCTGC 1 cut(s) 592
PciI ACATGT 1 cut(s) 1883
PdmI GAANNNNTTC 2 cut(s) 1304, 1352
PfeI GAWTC 6 cut(s) 53, 607, 748, 1078, 1478, 1733
PflFI GACNNNGTC 1 cut(s) 590
PinAI ACCGGT 1 cut(s) 1436
PleI GAGTC 2 cut(s) 768, 1291
PpsI GAGTC 2 cut(s) 768, 1291
PpuMI RGGWCCY 1 cut(s) 1333
PscI ACATGT 1 cut(s) 1883
PshBI ATTAAT 1 cut(s) 1290
PsiI TTATAA 1 cut(s) 852
Psp5II RGGWCCY 1 cut(s) 1333
Psp6I CCWGG 2 cut(s) 1054, 1675
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 2 cut(s) 1054, 1675
PspN4I GGNNCC 2 cut(s) 669, 1515
PspPI GGNCC 1 cut(s) 1333
PspPPI RGGWCCY 1 cut(s) 1333
PspXI VCTCGAGB 1 cut(s) 870
PstI CTGCAG 1 cut(s) 892
PsuI RGATCY 2 cut(s) 538, 1513
PsyI GACNNNGTC 1 cut(s) 590
PvuII CAGCTG 2 cut(s) 393, 1640
RsaI GTAC 3 cut(s) 101, 1222, 1882
RsaNI GTAC 3 cut(s) 100, 1221, 1881
RseI CAYNNNNRTG 1 cut(s) 411
SacII CCGCGG 1 cut(s) 194
SaqAI TTAA 9 cut(s) 819, 999, 1241, 1290, 1428, 1452, 1664, 1712, 1718
Sau3AI GATC 9 cut(s) 106, 439, 517, 538, 697, 1263, 1342, 1513, 1806
Sau96I GGNCC 1 cut(s) 1333
SchI GAGTC 2 cut(s) 769, 1292
ScrFI CCNGG 2 cut(s) 1056, 1677
SduI GDGCHC 1 cut(s) 1820
SfaNI GCATC 2 cut(s) 284, 406
SfcI CTRYAG 1 cut(s) 888
Sfr274I CTCGAG 1 cut(s) 870
Sfr303I CCGCGG 1 cut(s) 194
SgrBI CCGCGG 1 cut(s) 194
SinI GGWCC 1 cut(s) 1333
SlaI CTCGAG 1 cut(s) 870
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 870, 1508
SmoI CTYRAG 2 cut(s) 870, 1508
Sse9I AATT 7 cut(s) 199, 721, 973, 989, 1035, 1349, 1798
SsiI CCGC 5 cut(s) 191, 193, 411, 1210, 1505
SspI AATATT 1 cut(s) 478
SspMI CTAG 2 cut(s) 764, 1358
StyD4I CCNGG 2 cut(s) 1054, 1675
StyI CCWWGG 4 cut(s) 1152, 1336, 1357, 1872
TaaI ACNGT 4 cut(s) 227, 233, 1234, 1837
TaiI ACGT 3 cut(s) 216, 240, 550
TaqI TCGA 4 cut(s) 544, 843, 871, 897
TasI AATT 7 cut(s) 199, 721, 973, 989, 1035, 1349, 1798
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 1507
TfiI GAWTC 6 cut(s) 53, 607, 748, 1078, 1478, 1733
Tru1I TTAA 9 cut(s) 819, 999, 1241, 1290, 1428, 1452, 1664, 1712, 1718
Tru9I TTAA 9 cut(s) 819, 999, 1241, 1290, 1428, 1452, 1664, 1712, 1718
TscAI CASTG 2 cut(s) 238, 950
TseFI GTSAC 2 cut(s) 227, 233
TseI GCWGC 9 cut(s) 375, 393, 429, 565, 692, 962, 1637, 1640, 1749
Tsp45I GTSAC 2 cut(s) 227, 233
TspDTI ATGAA 6 cut(s) 5, 258, 618, 734, 1301, 1580
TspGWI ACGGA 2 cut(s) 69, 1313
TspRI CASTG 2 cut(s) 238, 950
Tth111I GACNNNGTC 1 cut(s) 590
VneI GTGCAC 1 cut(s) 1816
VpaK11BI GGWCC 1 cut(s) 1333
VspI ATTAAT 1 cut(s) 1290
XagI CCTNNNNNAGG 1 cut(s) 1680
XapI RAATTY 4 cut(s) 199, 721, 1035, 1349
XceI RCATGY 1 cut(s) 1887
XhoI CTCGAG 1 cut(s) 870
XmaJI CCTAGG 1 cut(s) 1357
XmnI GAANNNNTTC 2 cut(s) 1304, 1352
XspI CTAG 2 cut(s) 764, 1358
ZraI GACGTC 1 cut(s) 238
Zsp2I ATGCAT 2 cut(s) 1417, 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.