RchiOBHm_Chr7g0207611

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000071
Physical Location & Seq
Forward (+)
24885741 .. 24899354
13614 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18578

Sequence Viewer

Length: 1161 bp
ATGTCTCCACCGCCTGGGCTCCGGAGACAGGGGGAGGAGCATTTGGTTTGTCGGTTGCATAAATCCTTGTACGGTCTGAAACAGGCTTCAAGGCAGTGGTTTTCTAGATTTTCAGAAGTTATTCGGTCTGCTGGCTTTGTGCAATCTAGAGCAGACTACTCTCTTTTTACCAGGAGGCAAGGCAAGTCTTTTACAGTCTTATTGATATATGTTGATGATATATTAATTACTGGCAATGATCCTGTGAGTATAGCTGATGTCAAGAAATTTTTGCATAAAACATTCCGTTTGAAAGATCTTGGCAATTTAAAGTATTTTCTTGGCATTGAAGTGTCAGCATCTAAGAGAGGGATATTTATTTGTCAGCGCAAGTATGCGTTAGAAATTATAAAAGATGCAGGATTATTGGGTGCTGCTCCTGTTGACACACCCATGGAACGTGGATTAAAGTTGTCAGATAAGATTGAGTTACTCAAAGATCCAGAGAAGTATAGGCGTTTGGTTGGAAGATTGATTTATCTCACAGTGTCAAGGCCGGACATTACATATCCTGTTCATATATTAAGCAGGTTTATGCATCAGCCTCGAAAAGCTCATTGGGAAACAGCTTTGCGAGTGGTACGCTACCTCAAGTCAGCTCCTGGTCAAGGCTTGTTCTTTTCCTCAAATAGTGATCTTCGGCTACGAGCTTTTTGTGACTCAGATTGGGCAGGATGTCCACTTACAAGAAGGTCTACTACAGGGTATTGTGTGTTCCTGGGGCCTTCTTTAATTTCATGGAAGTCAAAACGTCAGAAAACAGTCTCTCTTTCTTCAGCTGAAGCAGAGTATCGTGCTATGACAGGAGCTTGCTGTGAATTAACTTGGCTACGTTATTTGCTTCAAGACTTGGGGATTTTACACCAGGAAACGACATTGCTCTATTGTGACAACAAGGCTGCTTTACATATAGCAGCAAATCCAGTGTTTCATGAACGTACAAGGCATATAGAAATGGATTGTCACTATATCAGGGATAAGATTCAAGATGGTTCAGTGGAGACACAATTTGTGAGTTCTGGAAATCAACTGGCTGATGTTCTAACTAAAGCTCTTGGCAAGGAGGACTTCGAACTTATGATTCGCAAGTTGGGTGTGCAGGATATCCACTCTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

386

Amino Acids

44.02

Weight (kDa)

9.49

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 146 2.6e-37 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 558
AccB7I CCANNNNNTGG 1 cut(s) 14
AccI GTMKAC 1 cut(s) 734
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 233, 473
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 2 cut(s) 798, 840
AfaI GTAC 3 cut(s) 71, 621, 979
AfiI CCNNNNNNNGG 3 cut(s) 14, 28, 647
AgsI TTSAA 5 cut(s) 90, 292, 329, 884, 1025
AjnI CCWGG 5 cut(s) 13, 170, 640, 756, 903
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 8 cut(s) 254, 593, 608, 638, 689, 818, 848, 1091
AluI AGCT 8 cut(s) 254, 593, 608, 638, 689, 818, 848, 1091
Alw26I GTCTC 4 cut(s) 9, 19, 808, 1034
AlwI GGATC 2 cut(s) 233, 473
AlwNI CAGNNNCTG 1 cut(s) 641
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 533, 761
ApeKI GCWGC 3 cut(s) 413, 938, 953
ApoI RAATTY 1 cut(s) 266
AseI ATTAAT 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 761
AsuII TTCGAA 1 cut(s) 1110
BanII GRGCYC 1 cut(s) 21
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
BbvI GCAGC 3 cut(s) 400, 925, 965
BccI CCATC 1 cut(s) 1022
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 5 cut(s) 15, 172, 642, 758, 905
BcoDI GTCTC 4 cut(s) 9, 19, 808, 1034
BfaI CTAG 2 cut(s) 105, 147
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 558
BglII AGATCT 1 cut(s) 295
BisI GCNGC 3 cut(s) 414, 939, 954
BlsI GCNGC 3 cut(s) 415, 940, 955
Bme1390I CCNGG 5 cut(s) 15, 172, 642, 758, 905
BmgT120I GGNCC 1 cut(s) 761
BmiI GGNNCC 2 cut(s) 20, 762
BmrFI CCNGG 5 cut(s) 15, 172, 642, 758, 905
BmsI GCATC 3 cut(s) 347, 385, 586
Bpu14I TTCGAA 1 cut(s) 1110
BpuEI CTTGAG 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 14, 432, 757
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 28, 647
Bse1I ACTGG 3 cut(s) 235, 962, 1074
Bse3DI GCAATG 2 cut(s) 241, 914
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 5 cut(s) 15, 172, 642, 758, 905
BseDI CCNNGG 3 cut(s) 14, 432, 757
BseGI GGATG 1 cut(s) 719
BseLI CCNNNNNNNGG 3 cut(s) 14, 28, 647
BseMI GCAATG 2 cut(s) 241, 914
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 3 cut(s) 235, 962, 1074
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 400, 925, 965
BsgI GTGCAG 1 cut(s) 1157
BshFI GGCC 2 cut(s) 535, 763
BsiSI CCGG 2 cut(s) 22, 536
BslI CCNNNNNNNGG 3 cut(s) 14, 28, 647
BsmAI GTCTC 4 cut(s) 9, 19, 808, 1034
BsnI GGCC 2 cut(s) 535, 763
Bsp119I TTCGAA 1 cut(s) 1110
Bsp1286I GDGCHC 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 238, 295, 478, 673
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 535, 763
BspCNI CTCAG 1 cut(s) 713
BspEI TCCGGA 1 cut(s) 21
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 2 cut(s) 20, 762
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 2 cut(s) 233, 473
BspT104I TTCGAA 1 cut(s) 1110
BsrDI GCAATG 2 cut(s) 241, 914
BsrI ACTGG 3 cut(s) 235, 962, 1074
BssECI CCNNGG 3 cut(s) 14, 432, 757
BssMI GATC 4 cut(s) 238, 295, 478, 673
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 5 cut(s) 15, 172, 642, 758, 905
Bst4CI ACNGT 4 cut(s) 74, 196, 526, 802
BstBI TTCGAA 1 cut(s) 1110
BstC8I GCNNGC 2 cut(s) 133, 850
BstDEI CTNAG 2 cut(s) 342, 700
BstDSI CCRYGG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 719
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 4 cut(s) 241, 298, 481, 676
BstMAI GTCTC 4 cut(s) 9, 19, 808, 1034
BstMBI GATC 4 cut(s) 238, 295, 478, 673
BstNI CCWGG 5 cut(s) 15, 172, 642, 758, 905
BstSCI CCNGG 5 cut(s) 13, 170, 640, 756, 903
BstSFI CTRYAG 1 cut(s) 738
BstV1I GCAGC 3 cut(s) 400, 925, 965
BstX2I RGATCY 2 cut(s) 295, 478
BstYI RGATCY 2 cut(s) 295, 478
BsuRI GGCC 2 cut(s) 535, 763
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 719
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 4 cut(s) 101, 531, 969, 1041
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 133, 850
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 970
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 761
Csp6I GTAC 3 cut(s) 70, 620, 978
CviAII CATG 3 cut(s) 433, 777, 971
CviQI GTAC 3 cut(s) 70, 620, 978
DdeI CTNAG 2 cut(s) 342, 700
DpnI GATC 4 cut(s) 240, 297, 480, 675
DpnII GATC 4 cut(s) 238, 295, 478, 673
DraI TTTAAA 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 1144
Eco57I CTGAAG 2 cut(s) 798, 840
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 761
EcoRII CCWGG 5 cut(s) 13, 170, 640, 756, 903
EcoRV GATATC 1 cut(s) 1144
EcoT14I CCWWGG 1 cut(s) 432
EcoT22I ATGCAT 1 cut(s) 579
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 3 cut(s) 436, 780, 974
FalI AAGNNNNNCTT 2 cut(s) 1091, 1123
FatI CATG 3 cut(s) 432, 776, 970
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 3 cut(s) 414, 939, 954
FokI GGATG 1 cut(s) 726
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 414, 939, 954
FspBI CTAG 2 cut(s) 105, 147
GlaI GCGC 1 cut(s) 368
GluI GCNGC 3 cut(s) 414, 939, 954
HaeIII GGCC 2 cut(s) 535, 763
HapII CCGG 2 cut(s) 22, 536
HhaI GCGC 1 cut(s) 369
Hin1II CATG 3 cut(s) 436, 780, 974
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 698, 1021, 1120
HpaII CCGG 2 cut(s) 22, 536
Hpy166II GTNNAC 3 cut(s) 424, 719, 735
Hpy188I TCNGA 5 cut(s) 78, 115, 457, 703, 795
Hpy188III TCNNGA 9 cut(s) 22, 105, 147, 262, 482, 884, 971, 1025, 1059
Hpy8I GTNNAC 3 cut(s) 424, 719, 735
HpyAV CCTTC 2 cut(s) 723, 774
HpyCH4III ACNGT 4 cut(s) 74, 196, 526, 802
HpyCH4IV ACGT 4 cut(s) 439, 790, 871, 976
HpyCH4V TGCA 6 cut(s) 58, 142, 274, 398, 577, 1138
HpyF3I CTNAG 2 cut(s) 342, 700
HpySE526I ACGT 4 cut(s) 439, 790, 871, 976
Hsp92II CATG 3 cut(s) 436, 780, 974
HspAI GCGC 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 238, 295, 478, 673
LmnI GCTCC 5 cut(s) 24, 37, 421, 643, 845
Lsp1109I GCAGC 3 cut(s) 400, 925, 965
LweI GCATC 3 cut(s) 347, 385, 586
MaeI CTAG 2 cut(s) 105, 147
MaeII ACGT 4 cut(s) 439, 790, 871, 976
MaeIII GTNAC 4 cut(s) 468, 695, 926, 1001
MalI GATC 4 cut(s) 240, 297, 480, 675
MboI GATC 4 cut(s) 238, 295, 478, 673
MboII GAAGA 3 cut(s) 519, 668, 804
MflI RGATCY 2 cut(s) 295, 478
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 7 cut(s) 225, 266, 304, 384, 771, 857, 1046
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 7 cut(s) 28, 168, 341, 594, 638, 673, 1096
Mph1103I ATGCAT 1 cut(s) 579
MroI TCCGGA 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 6 cut(s) 224, 308, 446, 563, 770, 860
MslI CAYNNNNRTG 2 cut(s) 329, 431
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 2 cut(s) 22, 536
MspR9I CCNGG 5 cut(s) 15, 172, 642, 758, 905
MvaI CCWGG 5 cut(s) 15, 172, 642, 758, 905
NcoI CCATGG 1 cut(s) 432
NdeII GATC 4 cut(s) 238, 295, 478, 673
NlaIII CATG 3 cut(s) 436, 780, 974
NlaIV GGNNCC 2 cut(s) 20, 762
NmuCI GTSAC 3 cut(s) 695, 926, 1001
NsiI ATGCAT 1 cut(s) 579
NspV TTCGAA 1 cut(s) 1110
PagI TCATGA 1 cut(s) 970
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 1021, 1120
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 3 cut(s) 415, 940, 955
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
PshBI ATTAAT 1 cut(s) 224
PsiI TTATAA 1 cut(s) 389
Psp6I CCWGG 5 cut(s) 13, 170, 640, 756, 903
PspGI CCWGG 5 cut(s) 13, 170, 640, 756, 903
PspN4I GGNNCC 2 cut(s) 20, 762
PspPI GGNCC 1 cut(s) 761
PsrI GAACNNNNNNTAC 2 cut(s) 737, 769
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 2 cut(s) 295, 478
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 3 cut(s) 71, 621, 979
RsaNI GTAC 3 cut(s) 70, 620, 978
RseI CAYNNNNRTG 2 cut(s) 329, 431
SaqAI TTAA 6 cut(s) 224, 308, 446, 563, 770, 860
SatI GCNGC 3 cut(s) 414, 939, 954
Sau3AI GATC 4 cut(s) 238, 295, 478, 673
Sau96I GGNCC 1 cut(s) 761
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 5 cut(s) 15, 172, 642, 758, 905
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 3 cut(s) 347, 385, 586
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 1110
SmiMI CAYNNNNRTG 2 cut(s) 329, 431
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 7 cut(s) 225, 266, 304, 384, 771, 857, 1046
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 105, 147
StyD4I CCNGG 5 cut(s) 13, 170, 640, 756, 903
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 4 cut(s) 74, 196, 526, 802
TaiI ACGT 4 cut(s) 442, 793, 874, 979
TaqI TCGA 2 cut(s) 586, 1110
TaqII GACCGA 1 cut(s) 114
TasI AATT 7 cut(s) 225, 266, 304, 384, 771, 857, 1046
TfiI GAWTC 2 cut(s) 1021, 1120
Tru1I TTAA 6 cut(s) 224, 308, 446, 563, 770, 860
Tru9I TTAA 6 cut(s) 224, 308, 446, 563, 770, 860
TscAI CASTG 4 cut(s) 101, 531, 969, 1041
TseFI GTSAC 3 cut(s) 695, 926, 1001
TseI GCWGC 3 cut(s) 413, 938, 953
Tsp45I GTSAC 3 cut(s) 695, 926, 1001
TspDTI ATGAA 4 cut(s) 545, 765, 959, 987
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 4 cut(s) 101, 531, 969, 1041
Van91I CCANNNNNTGG 1 cut(s) 14
VspI ATTAAT 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 1 cut(s) 266
XbaI TCTAGA 2 cut(s) 104, 146
XmiI GTMKAC 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 105, 147
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.