FvH4_3g33970
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000071
Physical Location & Seq
Forward (+)
29388859 .. 29395217
6359 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33970.t1

Sequence Viewer

Length: 1857 bp
ATGAATCCTCTTCCAACAGTTCGTCAAGCTTATGCCGCTGTCTCTCAAGAAGAAAAGCAACGCCTCCTCAGCGCCTCACAACTCACAGCTGATTCTAGCTCCAGTGCAGCCATGGCGAAAGCCATTCTTTTGCGTCACAAGAAGGACGTGGTCGAGGCAGAGGAAGAGGCAGGCCTCAGTGTGATTATTGTGGAGATATGGGCCACTGGGGATGTCCAATTTCATGAAAATATCTTTCCATATGCTTCTTCCCAACCCATCTCCACTCCTCCATCGGCCCACCTATCTGGCCCATTTCCCTTACTCCATCCCTCATCTTTTGATTCCATATTGGACTCATATCCCTCTCCATCTTCTCCTCTTCCACAAACTCCAACTCCCGGTCTGCCTCCTTCTTCTCCCTCTACATCTACGCCACCACCTCCTTCTCTCCCTGCCACGCCTCCTCCTCCTCCTCTCCGCACCTATTCCCGTCGTCCCCTCACCTCGGCACCACCACCAGCAACCACTCCTTCTCCATCTGCCCCGGATTCTCTCCTCCCTTTCGATTCCCCGGCCGGACCCGCCTCACCGGCACCAGCGTCCTCCTCGGACTTGCTTCCGCCATCACCACCCTCCGTTGAACTCGCACCCTTCGTTTCCAACCCAAAACCCGAACCCGAACCTCCTATTCTTCGTCGTTCCAGTCGCCAGACAGCTCCGCCGGCCAAATTGACTGATTACGTTTGTTCTGCTGTTTTCTCCGACCAATCGCCCTCTGTCAAGCCAGGTCCGACCAAAGGTACGCGTTATCCATTGGCCAATTATGTCTCTTATCACAGATACAAGCCTGCGTATCGTTCTTTCATTGCTCAAGTTAGTGCTGTCACAGAACCCAACTCTTATTCGGAAGCTGCTGCTATTCCAGAATGGCAAGATGCAATGCAATCGGAGTTGGCGGCGCTCCAAGCCAATGGTACTTGGACTCTTACCTCTCTCCCTCTTGGCAAGATACCGATTGGTTGTCGATGGGTCTATAAAGTCAAGCATAAGTCTGATGGCTCTATTGAACGATATAAAGCGCGGTTGGTGGCCAAGGGCTTCACCCAATTGGAAGGTGTCGACTATCAAGACACCTTCTCCCCTACTGCTAAAATCATTTCGGTCCGTTGCTTGCTTGCTTTAGCTGCTGCTCGTGGCTGGTCTCTTCACCAGTTAGATGTCAACAATGCTTTCCTCCATGGCGACCTCGAGGAAGAAATTTATATGTCTCCGCCGCCTGGTCTTCGGAGACAGGGGGAGGAGCACTTGGTTTGCCGTTTACATAAGTCACTATACGGGTTGAAACAAGCTTCGCGTCAGTGGTTTTCTAAATTTTCGGAAGCTATCCGTTCAGCTGGTTTTGTCCAATCCCGAGCTGATTACTCTCTCTTCACCAAAACACAAGGCAAGTCTTTTACTGCTCTGTTAATCTATGTTGATGATATACTGATTACCGGCAATGATCCTGTTAGTATTGCTGAGATTAAGAAGTTTTTACATAGCAGTTTTCGCCTTAAAGATCTTGGGGATTTGAAATACTTTTTGGGAATTGAAATTTCTGCTTCAAGAAATGGAATTTTTATCTCTCAGCGTAAATATGCAATCGAAGAAATGAGGGGGTGTCGAATTGGAAGCAGATCTAGGCATCTGCTTGTGGAGGAAGGCATAGCGACGACAGTGGTCAGTGCAGAGGAAACAGTCGAGGCCGACACTAGACCCACGGACGGCAACGACGTTGCAACAGAGGTGGAAGTGGGCAGGATCAATCTGGGTGTCCAGGTCAGGTTTGGGTTCTCCTCTGTGGGCTTGGGCTGCTATAGGCTTGATAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

619

Amino Acids

67.09

Weight (kDa)

7.65

Isoelectric Point (pI)

67.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 318 - 541 6.1e-71 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1229
AccB1I GGYRCC 2 cut(s) 490, 574
AccI GTMKAC 1 cut(s) 1101
AccII CGCG 3 cut(s) 787, 1063, 1336
AciI CCGC 9 cut(s) 36, 460, 564, 602, 701, 938, 1063, 1253, 1256
AclWI GGATC 2 cut(s) 1478, 1790
AcoI YGGCCR 4 cut(s) 555, 705, 798, 1071
AcsI RAATTY 4 cut(s) 1239, 1352, 1575, 1596
AfaI GTAC 2 cut(s) 784, 958
AfiI CCNNNNNNNGG 5 cut(s) 380, 487, 779, 1259, 1745
AflIII ACRYGT 1 cut(s) 785
AgsI TTSAA 6 cut(s) 623, 1049, 1324, 1555, 1574, 1587
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 3 cut(s) 766, 1258, 1797
AjuI GAANNNNNNNTTGG 2 cut(s) 1547, 1579
Alw21I GWGCWC 1 cut(s) 1287
Alw26I GTCTC 5 cut(s) 46, 814, 1188, 1254, 1264
AlwI GGATC 2 cut(s) 1478, 1790
Ama87I CYCGRG 2 cut(s) 1229, 1392
AoxI GGCC 9 cut(s) 172, 201, 276, 289, 555, 705, 798, 1071, 1725
ApeKI GCWGC 6 cut(s) 107, 893, 896, 1166, 1169, 1833
ApoI RAATTY 4 cut(s) 1239, 1352, 1575, 1596
AspLEI GCGC 3 cut(s) 74, 943, 1063
AspS9I GGNCC 6 cut(s) 201, 277, 290, 560, 770, 1144
AsuC2I CCSGG 3 cut(s) 381, 527, 554
AsuHPI GGTGA 6 cut(s) 475, 561, 600, 1075, 1181, 1405
AvaI CYCGRG 2 cut(s) 1229, 1392
AvaII GGWCC 3 cut(s) 560, 770, 1144
BalI TGGCCA 2 cut(s) 800, 1073
BanI GGYRCC 2 cut(s) 490, 574
BauI CACGAG 1 cut(s) 1173
BbsI GAAGAC 1 cut(s) 1256
Bbv12I GWGCWC 1 cut(s) 1287
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 6 cut(s) 119, 880, 883, 1153, 1156, 1820
BccI CCATC 8 cut(s) 266, 280, 315, 358, 526, 613, 1002, 1031
BceAI ACGGC 2 cut(s) 1281, 1762
BcgI CGANNNNNNTGC 2 cut(s) 909, 943
BciT130I CCWGG 3 cut(s) 768, 1260, 1799
BcnI CCSGG 3 cut(s) 381, 527, 554
BcoDI GTCTC 5 cut(s) 46, 814, 1188, 1254, 1264
BfaI CTAG 3 cut(s) 96, 1662, 1734
BfmI CTRYAG 1 cut(s) 1837
BfoI RGCGCY 2 cut(s) 75, 944
BglI GCCNNNNNGGC 1 cut(s) 572
BglII AGATCT 2 cut(s) 1540, 1658
BisI GCNGC 9 cut(s) 36, 108, 894, 897, 939, 1167, 1170, 1256, 1834
BlsI GCNGC 9 cut(s) 37, 109, 895, 898, 940, 1168, 1171, 1257, 1835
Bme1390I CCNGG 6 cut(s) 381, 527, 554, 768, 1260, 1799
Bme18I GGWCC 3 cut(s) 560, 770, 1144
BmeT110I CYCGRG 2 cut(s) 1229, 1392
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 6 cut(s) 201, 277, 290, 560, 770, 1144
BmiI GGNNCC 3 cut(s) 492, 562, 576
BmrFI CCNGG 6 cut(s) 381, 527, 554, 768, 1260, 1799
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 907, 1675
BmuI ACTGGG 1 cut(s) 216
BoxI GACNNNNGTC 1 cut(s) 1700
BpiI GAAGAC 1 cut(s) 1256
BpmI CTGGAG 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 30, 837
BpuMI CCSGG 3 cut(s) 381, 527, 554
BsaI GGTCTC 1 cut(s) 1188
BsaJI CCNNGG 8 cut(s) 111, 486, 525, 552, 588, 1074, 1219, 1740
BsaXI ACNNNNNCTCC 8 cut(s) 361, 391, 430, 460, 499, 529, 1103, 1133
Bsc4I CCNNNNNNNGG 5 cut(s) 380, 487, 779, 1259, 1745
Bse118I RCCGGY 3 cut(s) 571, 703, 1475
Bse1I ACTGG 4 cut(s) 102, 211, 684, 1192
Bse3DI GCAATG 3 cut(s) 846, 927, 1486
BseBI CCWGG 3 cut(s) 768, 1260, 1799
BseDI CCNNGG 8 cut(s) 111, 486, 525, 552, 588, 1074, 1219, 1740
BseGI GGATG 2 cut(s) 217, 307
BseLI CCNNNNNNNGG 5 cut(s) 380, 487, 779, 1259, 1745
BseMI GCAATG 3 cut(s) 846, 927, 1486
BseMII CTCAG 4 cut(s) 82, 190, 1491, 1622
BseNI ACTGG 4 cut(s) 102, 211, 684, 1192
BseX3I CGGCCG 1 cut(s) 555
BseXI GCAGC 6 cut(s) 119, 880, 883, 1153, 1156, 1820
BsgI GTGCAG 2 cut(s) 126, 1728
Bsh1236I CGCG 3 cut(s) 787, 1063, 1336
Bsh1285I CGRYCG 1 cut(s) 558
BshFI GGCC 9 cut(s) 174, 203, 278, 291, 557, 707, 800, 1073, 1727
BshNI GGYRCC 2 cut(s) 490, 574
BsiEI CGRYCG 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 1287
BsiHKCI CYCGRG 2 cut(s) 1229, 1392
BsiSI CCGG 7 cut(s) 381, 527, 554, 558, 572, 704, 1476
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 5 cut(s) 380, 487, 779, 1259, 1745
BsmAI GTCTC 5 cut(s) 46, 814, 1188, 1254, 1264
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 9 cut(s) 174, 203, 278, 291, 557, 707, 800, 1073, 1727
Bso31I GGTCTC 1 cut(s) 1188
BsoBI CYCGRG 2 cut(s) 1229, 1392
Bsp1286I GDGCHC 1 cut(s) 1287
Bsp143I GATC 4 cut(s) 1483, 1540, 1658, 1782
Bsp19I CCATGG 2 cut(s) 111, 1219
BspACI CCGC 9 cut(s) 36, 460, 564, 602, 701, 938, 1063, 1253, 1256
BspANI GGCC 9 cut(s) 174, 203, 278, 291, 557, 707, 800, 1073, 1727
BspCNI CTCAG 4 cut(s) 81, 189, 1492, 1621
BspFNI CGCG 3 cut(s) 787, 1063, 1336
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 492, 562, 576
BspPI GGATC 2 cut(s) 1478, 1790
BspT107I GGYRCC 2 cut(s) 490, 574
BspTNI GGTCTC 1 cut(s) 1188
BsrDI GCAATG 3 cut(s) 846, 927, 1486
BsrFI RCCGGY 3 cut(s) 571, 703, 1475
BsrI ACTGG 4 cut(s) 102, 211, 684, 1192
BssAI RCCGGY 3 cut(s) 571, 703, 1475
BssECI CCNNGG 8 cut(s) 111, 486, 525, 552, 588, 1074, 1219, 1740
BssMI GATC 4 cut(s) 1483, 1540, 1658, 1782
BssSI CACGAG 1 cut(s) 1173
BssT1I CCWWGG 3 cut(s) 111, 1074, 1219
Bst2BI CACGAG 1 cut(s) 1173
Bst2UI CCWGG 3 cut(s) 768, 1260, 1799
Bst4CI ACNGT 3 cut(s) 19, 1699, 1720
Bst6I CTCTTC 5 cut(s) 15, 159, 366, 1191, 1415
BstC8I GCNNGC 5 cut(s) 172, 705, 831, 1154, 1158
BstDEI CTNAG 4 cut(s) 68, 176, 1500, 1608
BstDSI CCRYGG 3 cut(s) 111, 1219, 1740
BstF5I GGATG 2 cut(s) 217, 307
BstFNI CGCG 3 cut(s) 787, 1063, 1336
BstH2I RGCGCY 2 cut(s) 75, 944
BstHHI GCGC 3 cut(s) 74, 943, 1063
BstKTI GATC 4 cut(s) 1486, 1543, 1661, 1785
BstMAI GTCTC 5 cut(s) 46, 814, 1188, 1254, 1264
BstMBI GATC 4 cut(s) 1483, 1540, 1658, 1782
BstMCI CGRYCG 1 cut(s) 558
BstNI CCWGG 3 cut(s) 768, 1260, 1799
BstPAI GACNNNNGTC 1 cut(s) 1700
BstSCI CCNGG 6 cut(s) 379, 525, 552, 766, 1258, 1797
BstSFI CTRYAG 1 cut(s) 1837
BstUI CGCG 3 cut(s) 787, 1063, 1336
BstV1I GCAGC 6 cut(s) 119, 880, 883, 1153, 1156, 1820
BstV2I GAAGAC 1 cut(s) 1256
BstX2I RGATCY 2 cut(s) 1540, 1658
BstXI CCANNNNNNTGG 2 cut(s) 287, 953
BstYI RGATCY 2 cut(s) 1540, 1658
BstZI CGGCCG 1 cut(s) 555
BsuRI GGCC 9 cut(s) 174, 203, 278, 291, 557, 707, 800, 1073, 1727
BtgI CCRYGG 3 cut(s) 111, 1219, 1740
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 217, 307
BtsIMutI CAGTG 6 cut(s) 109, 184, 204, 1346, 1704, 1711
Cac8I GCNNGC 5 cut(s) 172, 705, 831, 1154, 1158
CciI TCATGA 1 cut(s) 223
CfoI GCGC 3 cut(s) 74, 943, 1063
Cfr10I RCCGGY 3 cut(s) 571, 703, 1475
Cfr13I GGNCC 6 cut(s) 201, 277, 290, 560, 770, 1144
CpoI CGGWCCG 1 cut(s) 1144
CseI GACGC 3 cut(s) 122, 570, 1325
Csp6I GTAC 2 cut(s) 783, 957
CspCI CAANNNNNGTGG 2 cut(s) 1749, 1784
CspI CGGWCCG 1 cut(s) 1144
CviAII CATG 3 cut(s) 112, 224, 1220
CviQI GTAC 2 cut(s) 783, 957
DdeI CTNAG 4 cut(s) 68, 176, 1500, 1608
DpnI GATC 4 cut(s) 1485, 1542, 1660, 1784
DpnII GATC 4 cut(s) 1483, 1540, 1658, 1782
EaeI YGGCCR 4 cut(s) 555, 705, 798, 1071
EagI CGGCCG 1 cut(s) 555
Eam1104I CTCTTC 5 cut(s) 15, 159, 366, 1191, 1415
EarI CTCTTC 5 cut(s) 15, 159, 366, 1191, 1415
EciI GGCGGA 3 cut(s) 591, 690, 1242
EclXI CGGCCG 1 cut(s) 555
Eco130I CCWWGG 3 cut(s) 111, 1074, 1219
Eco147I AGGCCT 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 1188
Eco47I GGWCC 3 cut(s) 560, 770, 1144
Eco52I CGGCCG 1 cut(s) 555
Eco88I CYCGRG 2 cut(s) 1229, 1392
EcoRII CCWGG 3 cut(s) 766, 1258, 1797
EcoT14I CCWWGG 3 cut(s) 111, 1074, 1219
ErhI CCWWGG 3 cut(s) 111, 1074, 1219
FaeI CATG 3 cut(s) 115, 227, 1223
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 462
FatI CATG 3 cut(s) 111, 223, 1219
FauI CCCGC 1 cut(s) 571
FauNDI CATATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 1101
Fnu4HI GCNGC 9 cut(s) 36, 108, 894, 897, 939, 1167, 1170, 1256, 1834
FokI GGATG 2 cut(s) 224, 294
Fsp4HI GCNGC 9 cut(s) 36, 108, 894, 897, 939, 1167, 1170, 1256, 1834
FspBI CTAG 3 cut(s) 96, 1662, 1734
GlaI GCGC 3 cut(s) 73, 942, 1062
GluI GCNGC 9 cut(s) 36, 108, 894, 897, 939, 1167, 1170, 1256, 1834
GsuI CTGGAG 1 cut(s) 85
HaeII RGCGCY 2 cut(s) 75, 944
HaeIII GGCC 9 cut(s) 174, 203, 278, 291, 557, 707, 800, 1073, 1727
HapII CCGG 7 cut(s) 381, 527, 554, 558, 572, 704, 1476
HgaI GACGC 3 cut(s) 122, 570, 1325
HhaI GCGC 3 cut(s) 74, 943, 1063
Hin1II CATG 3 cut(s) 115, 227, 1223
Hin6I GCGC 3 cut(s) 72, 941, 1061
HinP1I GCGC 3 cut(s) 72, 941, 1061
HincII GTYRAC 2 cut(s) 1102, 1204
HindII GTYRAC 2 cut(s) 1102, 1204
HindIII AAGCTT 2 cut(s) 27, 1329
HinfI GANTC 7 cut(s) 4, 92, 323, 335, 530, 548, 964
HpaII CCGG 7 cut(s) 381, 527, 554, 558, 572, 704, 1476
HphI GGTGA 6 cut(s) 475, 561, 600, 1075, 1181, 1405
Hpy166II GTNNAC 3 cut(s) 1102, 1204, 1301
Hpy188I TCNGA 8 cut(s) 592, 745, 774, 889, 931, 1036, 1269, 1360
Hpy188III TCNNGA 6 cut(s) 47, 224, 905, 1109, 1392, 1587
Hpy8I GTNNAC 3 cut(s) 1102, 1204, 1301
Hpy99I CGWCG 4 cut(s) 477, 681, 1696, 1757
HpyAV CCTTC 8 cut(s) 136, 402, 435, 522, 643, 1088, 1126, 1676
HpyCH4III ACNGT 3 cut(s) 19, 1699, 1720
HpyCH4IV ACGT 3 cut(s) 147, 723, 1755
HpyCH4V TGCA 6 cut(s) 107, 920, 925, 1622, 1709, 1760
HpyF3I CTNAG 4 cut(s) 68, 176, 1500, 1608
HpySE526I ACGT 3 cut(s) 147, 723, 1755
Hsp92II CATG 3 cut(s) 115, 227, 1223
HspAI GCGC 3 cut(s) 72, 941, 1061
KroI GCCGGC 1 cut(s) 703
KroNI GCCGGC 1 cut(s) 705
Kzo9I GATC 4 cut(s) 1483, 1540, 1658, 1782
LmnI GCTCC 4 cut(s) 104, 703, 948, 1282
Lsp1109I GCAGC 6 cut(s) 119, 880, 883, 1153, 1156, 1820
LweI GCATC 2 cut(s) 907, 1675
MaeI CTAG 3 cut(s) 96, 1662, 1734
MaeII ACGT 3 cut(s) 147, 723, 1755
MaeIII GTNAC 3 cut(s) 134, 865, 1308
MalI GATC 4 cut(s) 1485, 1542, 1660, 1784
MboI GATC 4 cut(s) 1483, 1540, 1658, 1782
MfeI CAATTG 1 cut(s) 1088
MflI RGATCY 2 cut(s) 1540, 1658
MhlI GDGCHC 1 cut(s) 1287
MlsI TGGCCA 2 cut(s) 800, 1073
MluI ACGCGT 1 cut(s) 785
MluNI TGGCCA 2 cut(s) 800, 1073
MlyI GAGTC 2 cut(s) 329, 958
MmeI TCCRAC 5 cut(s) 38, 398, 666, 768, 797
Mox20I TGGCCA 2 cut(s) 800, 1073
MroNI GCCGGC 1 cut(s) 703
MscI TGGCCA 2 cut(s) 800, 1073
MseI TTAA 3 cut(s) 1448, 1506, 1536
Msp20I TGGCCA 2 cut(s) 800, 1073
MspA1I CMGCKG 3 cut(s) 38, 89, 1376
MspI CCGG 7 cut(s) 381, 527, 554, 558, 572, 704, 1476
MspR9I CCNGG 6 cut(s) 381, 527, 554, 768, 1260, 1799
MunI CAATTG 1 cut(s) 1088
MvaI CCWGG 3 cut(s) 768, 1260, 1799
MvnI CGCG 3 cut(s) 787, 1063, 1336
NaeI GCCGGC 1 cut(s) 705
NciI CCSGG 3 cut(s) 381, 527, 554
NcoI CCATGG 2 cut(s) 111, 1219
NdeI CATATG 1 cut(s) 241
NdeII GATC 4 cut(s) 1483, 1540, 1658, 1782
NgoMIV GCCGGC 1 cut(s) 703
NlaIII CATG 3 cut(s) 115, 227, 1223
NlaIV GGNNCC 3 cut(s) 492, 562, 576
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 3 cut(s) 134, 865, 1308
PaeR7I CTCGAG 1 cut(s) 1229
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 2 cut(s) 633, 1752
PdiI GCCGGC 1 cut(s) 705
PfeI GAWTC 5 cut(s) 4, 92, 323, 530, 548
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 9 cut(s) 37, 109, 895, 898, 940, 1168, 1171, 1257, 1835
PleI GAGTC 2 cut(s) 329, 958
PpsI GAGTC 2 cut(s) 329, 958
PshAI GACNNNNGTC 1 cut(s) 1700
Psp6I CCWGG 3 cut(s) 766, 1258, 1797
PspGI CCWGG 3 cut(s) 766, 1258, 1797
PspN4I GGNNCC 3 cut(s) 492, 562, 576
PspPI GGNCC 6 cut(s) 201, 277, 290, 560, 770, 1144
PspXI VCTCGAGB 1 cut(s) 1229
PsuI RGATCY 2 cut(s) 1540, 1658
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 2 cut(s) 89, 1376
RsaI GTAC 2 cut(s) 784, 958
RsaNI GTAC 2 cut(s) 783, 957
Rsr2I CGGWCCG 1 cut(s) 1144
RsrII CGGWCCG 1 cut(s) 1144
SalI GTCGAC 1 cut(s) 1100
SaqAI TTAA 3 cut(s) 1448, 1506, 1536
SatI GCNGC 9 cut(s) 36, 108, 894, 897, 939, 1167, 1170, 1256, 1834
Sau3AI GATC 4 cut(s) 1483, 1540, 1658, 1782
Sau96I GGNCC 6 cut(s) 201, 277, 290, 560, 770, 1144
SchI GAGTC 2 cut(s) 329, 958
ScrFI CCNGG 6 cut(s) 381, 527, 554, 768, 1260, 1799
SduI GDGCHC 1 cut(s) 1287
SfaNI GCATC 2 cut(s) 907, 1675
SfcI CTRYAG 1 cut(s) 1837
Sfr274I CTCGAG 1 cut(s) 1229
SinI GGWCC 3 cut(s) 560, 770, 1144
SlaI CTCGAG 1 cut(s) 1229
SmlI CTYRAG 3 cut(s) 45, 852, 1229
SmoI CTYRAG 3 cut(s) 45, 852, 1229
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 9 cut(s) 36, 460, 564, 602, 701, 938, 1063, 1253, 1256
SspMI CTAG 3 cut(s) 96, 1662, 1734
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 6 cut(s) 379, 525, 552, 766, 1258, 1797
StyI CCWWGG 3 cut(s) 111, 1074, 1219
TaaI ACNGT 3 cut(s) 19, 1699, 1720
TaiI ACGT 3 cut(s) 150, 726, 1758
TaqI TCGA 8 cut(s) 153, 546, 1006, 1101, 1230, 1626, 1645, 1722
TaqII GACCGA 1 cut(s) 1132
TauI GCSGC 3 cut(s) 38, 941, 1258
TfiI GAWTC 5 cut(s) 4, 92, 323, 530, 548
Tru1I TTAA 3 cut(s) 1448, 1506, 1536
Tru9I TTAA 3 cut(s) 1448, 1506, 1536
TscAI CASTG 6 cut(s) 109, 184, 211, 1346, 1704, 1711
TseFI GTSAC 3 cut(s) 134, 865, 1308
TseI GCWGC 6 cut(s) 107, 893, 896, 1166, 1169, 1833
Tsp45I GTSAC 3 cut(s) 134, 865, 1308
TspDTI ATGAA 4 cut(s) 17, 212, 240, 835
TspGWI ACGGA 4 cut(s) 607, 1136, 1358, 1757
TspRI CASTG 6 cut(s) 109, 184, 211, 1346, 1704, 1711
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 3 cut(s) 560, 770, 1144
XapI RAATTY 4 cut(s) 1239, 1352, 1575, 1596
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 1805
XhoI CTCGAG 1 cut(s) 1229
XmiI GTMKAC 1 cut(s) 1101
XspI CTAG 3 cut(s) 96, 1662, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.