RLG00000002389

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000071
Physical Location & Seq
Reverse (-)
33296182 .. 33298514
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002389

Sequence Viewer

Length: 1554 bp
ATGCCTAATTTGGAGCCCCGAGTGTTTAGGTGTACAGCTTATGTCCACATACCAAAGCTGCAACGGAGCAAACTTGATCCCCATGCAAAGAAGTGTATTTTTGTGGGTTATGCAAAGTTTCAGAAGGGCTACAGATGTTATGATCCGCTCACCAATACAGTACATATATCTCTTGATGTCTCATTCTGTGAATCTGAGCCATATTACTCAGGGGGAGCTTCTCAGTCTTCCCTTCAGGGGGAGAGAGAAAATGCAACTGCCGAACATAGTGTTGTGAATTTTGAGACAGAAAATGCAACTGTCGAACAGAGCGTTGTGAATTCTGAGACAGAAGAGACAACTTTTTTGGATAGTTTGAATCAAAATCAAGACGTATCTGAAGCTCACACACAAGATATTCCCCCTTCTGCATCACCAACTGAAGATCCTGGTCAGAATGATCCACCTCAGGGACCCCTAAACTTTAATGAGTCTTTTGGGTTAGAAAGTGTCGAACCTAGGAAATCACAAAGAGTTACCAAGGGAATCCCTAAGAAACAATATGAACTGGATATCAAAGCCAAAGCTAAATACCCTATAGCTAATTTTATGTCTAACCACAGCATTCTGGGGTCACATGCACTTGTTGTTGTTCAATTACCTACTGTACCTATTCCTAGTAACGTGCAGGATGCATTGATGGATCCAAAATGGACAAAGGCGATGAATGAAGAATTGGAAGCTCTTCAAAAGAATGCAACATGGGAACTAGTACCTATGCCGGTTGGAAAGAAGACTGTAGGATGTTGTTGGGTATTTACTGTGAAGCTTAATGCAGATGGAACTATTAATAGATACAAGGCAAGGTTCGTTGCCAACGGATATACACAACGCTATGAGATTGATTATAAGGAGACTTTTGCACCTGTGGCAAAGATTAATAATGTCTGGATTCTAATCTCACTTGCAGCAAACAAAGATTGGCCCTTGCACCAGTTTGATGTGAAGACTACATTTCTTAATGGGAATTTGGAGGAAGAAGTGTACATGGATGTGCCCCTAGGGGATGATCCGAAAGAGATAAATGAATTGCGAAAGTATTTGTCAAAGGAGTTTGAAATGAAGGATCTGGGACAACTGAAGTATTTCTTGGGGATGCTGGACTGCCGACCCATCGAGACACCCATTGAGATGACTCACGGACTTGCTATCTATCCTGATCAAGTTCCAACTGATAAAGGGAGTAAAGAGCATATGGATGCAATCTTTCGTATTTTGAGGTACTTGAAGATGGCGCTAGACCTGGGTTACAAGCTTAAAAAGCCTATGGATTTGCATTGTGATAATACAGCTGTCATTGAGATTGCACATAATCCAGTTCAGCATGATAGAACAAAGCATGTGGAGGTTAACCATCATTTTATTAAAGAAAATCTTGACAGAAAGGTTATTCGCTTTCCATTTGTAAACTCAGAGGAGCAATTAGCTGATGTTCTTACTAAAGGAGTGTCTAGAAAGGTATTTGATAGCTCGGTTGACAAGTTGGGCATGATAGATATCTATGCACCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RVT_2 TIR

Protein Analysis

518

Amino Acids

58.7

Weight (kDa)

5.79

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 11 - 68 1.1e-25 Retroviral polymerase SH3-like domain
RVT_2 PF07727 245 - 348 2.8e-31 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 1 cut(s) 146
AclWI GGATC 8 cut(s) 71, 137, 419, 434, 677, 690, 1043, 1113
AcsI RAATTY 3 cut(s) 277, 319, 1006
AcuI CTGAAG 4 cut(s) 218, 399, 441, 1139
AfaI GTAC 6 cut(s) 34, 162, 648, 753, 1025, 1262
AfiI CCNNNNNNNGG 3 cut(s) 237, 238, 449
AgsI TTSAA 5 cut(s) 358, 635, 728, 1097, 1267
AhlI ACTAGT 1 cut(s) 748
AjnI CCWGG 2 cut(s) 427, 1281
AjuI GAANNNNNNNTTGG 4 cut(s) 698, 730, 1112, 1144
Alw26I GTCTC 6 cut(s) 184, 278, 320, 329, 887, 1151
AlwI GGATC 8 cut(s) 71, 137, 419, 434, 677, 690, 1043, 1113
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 1 cut(s) 962
ApeKI GCWGC 2 cut(s) 58, 947
ApoI RAATTY 3 cut(s) 277, 319, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AseI ATTAAT 2 cut(s) 828, 918
Asp700I GAANNNNTTC 2 cut(s) 723, 1124
AspA2I CCTAGG 2 cut(s) 497, 1039
AspLEI GCGC 1 cut(s) 1276
AspS9I GGNCC 2 cut(s) 452, 963
AsuHPI GGTGA 2 cut(s) 142, 405
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 452
AvrII CCTAGG 2 cut(s) 497, 1039
AxyI CCTNAGG 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 1038
BamHI GGATCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 3 cut(s) 219, 779, 992
BbvI GCAGC 2 cut(s) 45, 959
BccI CCATC 5 cut(s) 673, 812, 1160, 1264, 1401
BciT130I CCWGG 2 cut(s) 429, 1283
BclI TGATCA 1 cut(s) 1198
BcoDI GTCTC 6 cut(s) 184, 278, 320, 329, 887, 1151
BcuI ACTAGT 1 cut(s) 748
BfaI CTAG 6 cut(s) 498, 657, 749, 1040, 1277, 1491
BfmI CTRYAG 3 cut(s) 130, 576, 777
BfoI RGCGCY 1 cut(s) 1277
BisI GCNGC 2 cut(s) 59, 948
BlnI CCTAGG 2 cut(s) 497, 1039
BlsI GCNGC 2 cut(s) 60, 949
Bme1390I CCNGG 2 cut(s) 429, 1283
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 452, 963
BmiI GGNNCC 4 cut(s) 15, 453, 454, 684
BmrFI CCNGG 2 cut(s) 429, 1283
BmsI GCATC 4 cut(s) 419, 661, 1125, 1228
BpiI GAAGAC 3 cut(s) 219, 779, 992
BsaBI GATNNNNATC 2 cut(s) 935, 1535
BsaJI CCNNGG 4 cut(s) 497, 519, 1039, 1282
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 238, 449
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 3 cut(s) 552, 973, 1355
Bse21I CCTNAGG 1 cut(s) 447
Bse8I GATNNNNATC 2 cut(s) 935, 1535
BseBI CCWGG 2 cut(s) 429, 1283
BseDI CCNNGG 4 cut(s) 497, 519, 1039, 1282
BseGI GGATG 6 cut(s) 676, 788, 1036, 1051, 1140, 1243
BseJI GATNNNNATC 2 cut(s) 935, 1535
BseLI CCNNNNNNNGG 3 cut(s) 237, 238, 449
BseMII CTCAG 6 cut(s) 186, 222, 236, 315, 461, 1464
BseNI ACTGG 3 cut(s) 552, 973, 1355
BseRI GAGGAG 1 cut(s) 1469
BseSI GKGCMC 1 cut(s) 1038
BseXI GCAGC 2 cut(s) 45, 959
BsgI GTGCAG 1 cut(s) 686
BshFI GGCC 1 cut(s) 964
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 761
BslFI GGGAC 2 cut(s) 465, 1125
BslI CCNNNNNNNGG 3 cut(s) 237, 238, 449
BsmAI GTCTC 6 cut(s) 184, 278, 320, 329, 887, 1151
BsmFI GGGAC 2 cut(s) 465, 1125
BsmI GAATGC 2 cut(s) 603, 739
BsnI GGCC 1 cut(s) 964
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 18, 1038
Bsp1407I TGTACA 2 cut(s) 32, 1023
Bsp143I GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
BspACI CCGC 1 cut(s) 146
BspANI GGCC 1 cut(s) 964
BspCNI CTCAG 6 cut(s) 187, 221, 235, 316, 460, 1463
BspLI GGNNCC 4 cut(s) 15, 453, 454, 684
BspPI GGATC 8 cut(s) 71, 137, 419, 434, 677, 690, 1043, 1113
BspQI GCTCTTC 1 cut(s) 729
BsrBI CCGCTC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 760
BsrGI TGTACA 2 cut(s) 32, 1023
BsrI ACTGG 3 cut(s) 552, 973, 1355
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 4 cut(s) 497, 519, 1039, 1282
BssMI GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
BssT1I CCWWGG 3 cut(s) 497, 519, 1039
Bst2UI CCWGG 2 cut(s) 429, 1283
Bst4CI ACNGT 5 cut(s) 160, 301, 646, 778, 802
Bst6I CTCTTC 2 cut(s) 327, 729
BstAUI TGTACA 2 cut(s) 32, 1023
BstDEI CTNAG 7 cut(s) 195, 208, 222, 324, 447, 531, 1450
BstF5I GGATG 6 cut(s) 676, 788, 1036, 1051, 1140, 1243
BstH2I RGCGCY 1 cut(s) 1277
BstHHI GCGC 1 cut(s) 1276
BstKTI GATC 8 cut(s) 79, 145, 427, 442, 685, 1051, 1108, 1201
BstMAI GTCTC 6 cut(s) 184, 278, 320, 329, 887, 1151
BstMBI GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
BstMWI GCNNNNNNNGC 2 cut(s) 908, 1300
BstNI CCWGG 2 cut(s) 429, 1283
BstNSI RCATGY 2 cut(s) 620, 1382
BstSCI CCNGG 2 cut(s) 427, 1281
BstSFI CTRYAG 3 cut(s) 130, 576, 777
BstSLI GKGCMC 1 cut(s) 1038
BstV1I GCAGC 2 cut(s) 45, 959
BstV2I GAAGAC 3 cut(s) 219, 779, 992
BstX2I RGATCY 3 cut(s) 424, 682, 1105
BstYI RGATCY 3 cut(s) 424, 682, 1105
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 1 cut(s) 964
BtgZI GCGATG 1 cut(s) 716
BtsCI GGATG 6 cut(s) 676, 788, 1036, 1051, 1140, 1243
CfoI GCGC 1 cut(s) 1276
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 452, 963
Csp6I GTAC 6 cut(s) 33, 161, 647, 752, 1024, 1261
CspCI CAANNNNNGTGG 2 cut(s) 1362, 1397
CviAII CATG 7 cut(s) 83, 617, 741, 1027, 1364, 1379, 1528
CviQI GTAC 6 cut(s) 33, 161, 647, 752, 1024, 1261
DdeI CTNAG 7 cut(s) 195, 208, 222, 324, 447, 531, 1450
DpnI GATC 8 cut(s) 78, 144, 426, 441, 684, 1050, 1107, 1200
DpnII GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
Eam1104I CTCTTC 2 cut(s) 327, 729
EarI CTCTTC 2 cut(s) 327, 729
Eco130I CCWWGG 3 cut(s) 497, 519, 1039
Eco24I GRGCYC 1 cut(s) 18
Eco32I GATATC 2 cut(s) 553, 1537
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 4 cut(s) 218, 399, 441, 1139
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 427, 1281
EcoRV GATATC 2 cut(s) 553, 1537
EcoT14I CCWWGG 3 cut(s) 497, 519, 1039
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 3 cut(s) 497, 519, 1039
FaeI CATG 7 cut(s) 86, 620, 744, 1030, 1367, 1382, 1531
FalI AAGNNNNNCTT 4 cut(s) 1112, 1144, 1398, 1430
FaqI GGGAC 2 cut(s) 465, 1125
FatI CATG 7 cut(s) 82, 616, 740, 1026, 1363, 1378, 1527
FauNDI CATATG 1 cut(s) 1233
FbaI TGATCA 1 cut(s) 1198
Fnu4HI GCNGC 2 cut(s) 59, 948
FokI GGATG 6 cut(s) 683, 795, 1043, 1058, 1147, 1250
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 59, 948
FspBI CTAG 6 cut(s) 498, 657, 749, 1040, 1277, 1491
GlaI GCGC 1 cut(s) 1275
GluI GCNGC 2 cut(s) 59, 948
HaeII RGCGCY 1 cut(s) 1277
HaeIII GGCC 1 cut(s) 964
HapII CCGG 1 cut(s) 761
HhaI GCGC 1 cut(s) 1276
Hin1II CATG 7 cut(s) 86, 620, 744, 1030, 1367, 1382, 1531
Hin6I GCGC 1 cut(s) 1274
HinP1I GCGC 1 cut(s) 1274
HincII GTYRAC 2 cut(s) 1390, 1516
HindII GTYRAC 2 cut(s) 1390, 1516
HindIII AAGCTT 2 cut(s) 806, 1292
HinfI GANTC 6 cut(s) 191, 358, 470, 525, 931, 1174
HpaI GTTAAC 1 cut(s) 1390
HpaII CCGG 1 cut(s) 761
HphI GGTGA 2 cut(s) 142, 405
Hpy166II GTNNAC 6 cut(s) 33, 46, 1024, 1390, 1447, 1516
Hpy188I TCNGA 7 cut(s) 123, 196, 325, 379, 435, 1053, 1453
Hpy188III TCNNGA 7 cut(s) 173, 368, 928, 1156, 1196, 1415, 1491
Hpy8I GTNNAC 6 cut(s) 33, 46, 1024, 1390, 1447, 1516
HpyAV CCTTC 4 cut(s) 118, 242, 414, 1096
HpyCH4III ACNGT 5 cut(s) 160, 301, 646, 778, 802
HpyCH4IV ACGT 2 cut(s) 372, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 908, 1300
HpyF3I CTNAG 7 cut(s) 195, 208, 222, 324, 447, 531, 1450
HpySE526I ACGT 2 cut(s) 372, 663
Hsp92II CATG 7 cut(s) 86, 620, 744, 1030, 1367, 1382, 1531
HspAI GCGC 1 cut(s) 1274
KflI GGGWCCC 1 cut(s) 452
Ksp22I TGATCA 1 cut(s) 1198
KspAI GTTAAC 1 cut(s) 1390
Kzo9I GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 4 cut(s) 13, 66, 215, 1456
Lsp1109I GCAGC 2 cut(s) 45, 959
LweI GCATC 4 cut(s) 419, 661, 1125, 1228
MaeI CTAG 6 cut(s) 498, 657, 749, 1040, 1277, 1491
MaeII ACGT 2 cut(s) 372, 663
MaeIII GTNAC 4 cut(s) 514, 612, 659, 1286
MalI GATC 8 cut(s) 78, 144, 426, 441, 684, 1050, 1107, 1200
MbiI CCGCTC 1 cut(s) 148
MboI GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
MboII GAAGA 9 cut(s) 219, 344, 434, 716, 722, 784, 997, 1028, 1279
MflI RGATCY 3 cut(s) 424, 682, 1105
MhlI GDGCHC 2 cut(s) 18, 1038
MluCI AATT 9 cut(s) 7, 277, 319, 583, 635, 713, 1006, 1067, 1460
MlyI GAGTC 2 cut(s) 479, 1168
MmeI TCCRAC 2 cut(s) 745, 1232
MnlI CCTC 5 cut(s) 456, 1006, 1251, 1378, 1447
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 2 cut(s) 723, 1124
MseI TTAA 8 cut(s) 465, 810, 828, 918, 999, 1296, 1389, 1404
MslI CAYNNNNRTG 3 cut(s) 1031, 1169, 1236
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 1 cut(s) 761
MspR9I CCNGG 2 cut(s) 429, 1283
Mva1269I GAATGC 2 cut(s) 603, 739
MvaI CCWGG 2 cut(s) 429, 1283
MwoI GCNNNNNNNGC 2 cut(s) 908, 1300
NdeI CATATG 1 cut(s) 1233
NdeII GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
NlaIII CATG 7 cut(s) 86, 620, 744, 1030, 1367, 1382, 1531
NlaIV GGNNCC 4 cut(s) 15, 453, 454, 684
NmuCI GTSAC 1 cut(s) 612
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 2 cut(s) 620, 1382
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 2 cut(s) 603, 739
PdmI GAANNNNTTC 2 cut(s) 723, 1124
PfeI GAWTC 4 cut(s) 191, 358, 525, 931
PkrI GCNGC 2 cut(s) 60, 949
PleI GAGTC 2 cut(s) 478, 1168
PpsI GAGTC 2 cut(s) 478, 1168
PpuMI RGGWCCY 1 cut(s) 452
PshBI ATTAAT 2 cut(s) 828, 918
PsiI TTATAA 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 427, 1281
PspGI CCWGG 2 cut(s) 427, 1281
PspN4I GGNNCC 4 cut(s) 15, 453, 454, 684
PspPI GGNCC 2 cut(s) 452, 963
PspPPI RGGWCCY 1 cut(s) 452
PsuI RGATCY 3 cut(s) 424, 682, 1105
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 6 cut(s) 34, 162, 648, 753, 1025, 1262
RsaNI GTAC 6 cut(s) 33, 161, 647, 752, 1024, 1261
RseI CAYNNNNRTG 3 cut(s) 1031, 1169, 1236
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 8 cut(s) 465, 810, 828, 918, 999, 1296, 1389, 1404
SatI GCNGC 2 cut(s) 59, 948
Sau3AI GATC 8 cut(s) 76, 142, 424, 439, 682, 1048, 1105, 1198
Sau96I GGNCC 2 cut(s) 452, 963
SchI GAGTC 2 cut(s) 479, 1168
ScrFI CCNGG 2 cut(s) 429, 1283
SduI GDGCHC 2 cut(s) 18, 1038
SfaNI GCATC 4 cut(s) 419, 661, 1125, 1228
SfcI CTRYAG 3 cut(s) 130, 576, 777
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 3 cut(s) 1031, 1169, 1236
SpeI ACTAGT 1 cut(s) 748
Sse9I AATT 9 cut(s) 7, 277, 319, 583, 635, 713, 1006, 1067, 1460
SsiI CCGC 1 cut(s) 146
SspMI CTAG 6 cut(s) 498, 657, 749, 1040, 1277, 1491
StyD4I CCNGG 2 cut(s) 427, 1281
StyI CCWWGG 3 cut(s) 497, 519, 1039
TaaI ACNGT 5 cut(s) 160, 301, 646, 778, 802
TaiI ACGT 2 cut(s) 375, 666
TaqI TCGA 3 cut(s) 303, 492, 1155
TasI AATT 9 cut(s) 7, 277, 319, 583, 635, 713, 1006, 1067, 1460
TatI WGTACW 3 cut(s) 32, 160, 1023
TfiI GAWTC 4 cut(s) 191, 358, 525, 931
Tru1I TTAA 8 cut(s) 465, 810, 828, 918, 999, 1296, 1389, 1404
Tru9I TTAA 8 cut(s) 465, 810, 828, 918, 999, 1296, 1389, 1404
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 2 cut(s) 58, 947
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 5 cut(s) 558, 719, 723, 1080, 1115
TspGWI ACGGA 3 cut(s) 79, 873, 1194
VpaK11BI GGWCC 1 cut(s) 452
VspI ATTAAT 2 cut(s) 828, 918
XapI RAATTY 3 cut(s) 277, 319, 1006
XbaI TCTAGA 1 cut(s) 1490
XceI RCATGY 2 cut(s) 620, 1382
XmaJI CCTAGG 2 cut(s) 497, 1039
XmnI GAANNNNTTC 2 cut(s) 723, 1124
XspI CTAG 6 cut(s) 498, 657, 749, 1040, 1277, 1491
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.