RchiOBHm_Chr4g0410841
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000071
Physical Location & Seq
Forward (+)
34622772 .. 34626079
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38173

Sequence Viewer

Length: 1686 bp
ATGCAATCAGAGAAACAGGCTATGGGGCATTCGGTAACTACCGAATTTTTTGTTATGGCTCAATGCAAACAGGGTCCTCCTCCAGGCTTCTTAGGACCTTCTCCACACCGTCCTCTAGGTAAACCAAATCCATATGCAAACAAAAGGTGCATTATCTGTGGGGAATTAGGTCATAGCAAGGAGCGGTGCTATGAAGTGATTAGTTACCCTGATTGGTGGGACTTCACCAAGAAACCGCGAAAGAATCTGGGCAAGGCCGCTGTTGCTACTAAAGAGGAAGTTTACCTAGACAATGCCTCCGCTAATGTAGCGCAGTCAGGTATGAAGGGTAAGGTTACTTTTAATAGTACATGGATAATTGATACAGGTGCATCTGACCATATGACCAATGACCCAAGTCTTATGAAAAACCTTAGACGTTTCCCTCAAGGCGTTGTCTCTACTGCTGATGGTACTCCAACTCCGGTCACCGGAGAAGGTTCTATTGCTTTATCTGATACCTTAACCCTTGAATCTTCTGACAATGGTGGAGAGTTTGTGAATGGCCCTATGATTGAGTTTTGCCGGTCACATGGAATTCGTCATCAAACCTCCAATTCTTATACTCCTCAACAGAATGGTTTAGCAGAACGGAAGAACAAGCATTTGATGGAAGTTGTTCGTGCTTCCTTGTTTGGCATGAATGTACCTCGGTCCTATTGGGGAGAAGCAGTAAAATCAGCAGCATATCTTATCAATTGTACTCCTTCACGGGTGATTGAGTTTCAGAATCCTCATCAGAAGCTTCATACACTTTTGACCATCCCTTCTATGCCTAATTTGGAGCCCCGGGTGTTTGGGTGCACAACCTATGTTCATATTCCCAAGCCTCAACGTAGCAAGCTTGATCCTCGTGCCCGTAAGTGTATCTTTGTTGGTTATGCTGAGTTCCAGAAGGGTTATCGATGTTATGATCCCCTTACTGGTACTATACATGAAGCATTGACGGATCCAAAATGGACAAAGGCGATGAATGAAGACTTGGAAGCTCTTCAAAAGAATGCAACATGGGAGCTAGTACCTATGCTGGTTGGAAAGAAGACTGTAGGATGTCGTTGGGTATTTACTGTGAAGCTTAATGCAGATGGAACTATTAATAGATACAAGGCGAGGTTGGTTGCCAAAGGATATACACAACGCTATGGGATTGATTATGAGGAGACTTTTGCACCTGTGGCAAAGATTAATACTGTCCGAATTCTAATCTCACTTGCAGCAAATAAAGATTGGCCCTTGCACCAGTTTGATGTGAATAATGCGTTTCTTAATGGGAATTTGGAGGAAGAAGTGTACATGGATGTGCCCCCAGGTGTTAAGAATTACCCAAGTGACGTTGGCAAGTTTGAAATGAAGGATCTGGGACAACTAAAGTATTTTCTGGGTATTGAAGTTGCAAGGTCTAAGAAGGGGATTTTGCTTTCACAAAGGAAGTATGTCCTTGATTTACTTGCTGAAACGGGGATGCTGGACTGCAGACCAATGGAGAGACCCATTGAGATGAATCACAGACTTGCTATTTATCCTGATCAAGTTCCAACTGATAAAGGGAGGTATCAACGTCTTGTAGGAAGGTTGATTTATCTTTCACATACTAGACCTGATATTGCTGCTTATGATAGCATATGGATGCAGTCTTTCGTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 rve

Protein Analysis

561

Amino Acids

63.26

Weight (kDa)

9.05

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 118 - 165 2.8e-09 Pol polyprotein, beta-barrel domain
SH3_retrovirus PF25597 281 - 326 1.3e-20 Retroviral polymerase SH3-like domain
RVT_2 PF07727 347 - 453 1.9e-34 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 460 - 512 1.2e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AccII CGCG 1 cut(s) 238
AciI CCGC 4 cut(s) 184, 236, 258, 300
AclWI GGATC 5 cut(s) 881, 947, 983, 996, 1401
AcsI RAATTY 4 cut(s) 44, 576, 1236, 1312
AfaI GTAC 7 cut(s) 349, 454, 687, 742, 967, 1059, 1331
AfiI CCNNNNNNNGG 3 cut(s) 83, 470, 962
AgsI TTSAA 4 cut(s) 512, 1034, 1385, 1427
AjnI CCWGG 2 cut(s) 82, 1345
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AluBI AGCT 5 cut(s) 784, 883, 1028, 1054, 1114
AluI AGCT 5 cut(s) 784, 883, 1028, 1054, 1114
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 3 cut(s) 442, 1193, 1519
Alw44I GTGCAC 1 cut(s) 841
AlwI GGATC 5 cut(s) 881, 947, 983, 996, 1401
Ama87I CYCGRG 1 cut(s) 828
AoxI GGCC 3 cut(s) 255, 544, 1268
ApaLI GTGCAC 1 cut(s) 841
ApeKI GCWGC 3 cut(s) 722, 1253, 1646
ApoI RAATTY 4 cut(s) 44, 576, 1236, 1312
AseI ATTAAT 2 cut(s) 1134, 1224
Asp700I GAANNNNTTC 2 cut(s) 657, 1029
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 5 cut(s) 74, 95, 545, 693, 1269
AsuC2I CCSGG 2 cut(s) 829, 830
AsuHPI GGTGA 3 cut(s) 217, 460, 766
AvaI CYCGRG 1 cut(s) 828
AvaII GGWCC 3 cut(s) 74, 95, 693
BaeGI GKGCMC 3 cut(s) 845, 898, 1344
BamHI GGATCC 1 cut(s) 988
BanII GRGCYC 1 cut(s) 828
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 2 cut(s) 1023, 1085
Bbv12I GWGCWC 1 cut(s) 845
BbvI GCAGC 3 cut(s) 734, 1265, 1633
BccI CCATC 4 cut(s) 443, 643, 809, 1118
BciT130I CCWGG 2 cut(s) 84, 1347
BclI TGATCA 1 cut(s) 1564
BcnI CCSGG 2 cut(s) 829, 830
BcoDI GTCTC 3 cut(s) 442, 1193, 1519
BfaI CTAG 4 cut(s) 116, 287, 1055, 1632
BfmI CTRYAG 2 cut(s) 1083, 1510
BisI GCNGC 4 cut(s) 258, 723, 1254, 1647
BlsI GCNGC 4 cut(s) 259, 724, 1255, 1648
Bme1390I CCNGG 4 cut(s) 84, 829, 830, 1347
Bme18I GGWCC 3 cut(s) 74, 95, 693
BmeT110I CYCGRG 1 cut(s) 828
BmgT120I GGNCC 5 cut(s) 74, 95, 545, 693, 1269
BmiI GGNNCC 3 cut(s) 75, 825, 990
BmrFI CCNGG 4 cut(s) 84, 829, 830, 1347
BmsI GCATC 3 cut(s) 380, 1491, 1656
BoxI GACNNNNGTC 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 1023, 1085
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 2 cut(s) 829, 830
Bsa29I ATCGAT 1 cut(s) 943
BsaI GGTCTC 1 cut(s) 1519
BsaJI CCNNGG 4 cut(s) 689, 827, 828, 1345
BsaWI WCCGGW 2 cut(s) 463, 470
BsaXI ACNNNNNCTCC 8 cut(s) 281, 311, 445, 475, 522, 552, 696, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 470, 962
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 2 cut(s) 967, 1279
BseBI CCWGG 2 cut(s) 84, 1347
BseCI ATCGAT 1 cut(s) 943
BseDI CCNNGG 4 cut(s) 689, 827, 828, 1345
BseGI GGATG 5 cut(s) 801, 1094, 1342, 1506, 1671
BseLI CCNNNNNNNGG 3 cut(s) 83, 470, 962
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 2 cut(s) 967, 1279
BseRI GAGGAG 3 cut(s) 69, 597, 1211
BseSI GKGCMC 3 cut(s) 845, 898, 1344
BseXI GCAGC 3 cut(s) 734, 1265, 1633
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 257, 546, 1270
BshVI ATCGAT 1 cut(s) 943
BsiHKAI GWGCWC 1 cut(s) 845
BsiHKCI CYCGRG 1 cut(s) 828
BsiSI CCGG 4 cut(s) 464, 471, 565, 829
BslFI GGGAC 2 cut(s) 233, 1413
BslI CCNNNNNNNGG 3 cut(s) 83, 470, 962
BsmAI GTCTC 3 cut(s) 442, 1193, 1519
BsmFI GGGAC 2 cut(s) 233, 1413
BsmI GAATGC 2 cut(s) 28, 1045
BsnI GGCC 3 cut(s) 257, 546, 1270
Bso31I GGTCTC 1 cut(s) 1519
BsoBI CYCGRG 1 cut(s) 828
Bsp1286I GDGCHC 4 cut(s) 828, 845, 898, 1344
Bsp1407I TGTACA 1 cut(s) 1329
Bsp143I GATC 5 cut(s) 886, 952, 988, 1393, 1564
BspACI CCGC 4 cut(s) 184, 236, 258, 300
BspANI GGCC 3 cut(s) 257, 546, 1270
BspCNI CTCAG 1 cut(s) 916
BspDI ATCGAT 1 cut(s) 943
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 75, 825, 990
BspMAI CTGCAG 1 cut(s) 1514
BspPI GGATC 5 cut(s) 881, 947, 983, 996, 1401
BspQI GCTCTTC 1 cut(s) 1035
BspTNI GGTCTC 1 cut(s) 1519
BsrBI CCGCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 564
BsrGI TGTACA 1 cut(s) 1329
BsrI ACTGG 2 cut(s) 967, 1279
BssAI RCCGGY 1 cut(s) 564
BssECI CCNNGG 4 cut(s) 689, 827, 828, 1345
BssMI GATC 5 cut(s) 886, 952, 988, 1393, 1564
BssSI CACGAG 1 cut(s) 891
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 84, 1347
Bst4CI ACNGT 4 cut(s) 110, 1084, 1108, 1231
Bst6I CTCTTC 1 cut(s) 1035
BstAUI TGTACA 1 cut(s) 1329
BstC8I GCNNGC 1 cut(s) 881
BstDEI CTNAG 4 cut(s) 91, 413, 924, 1440
BstEII GGTNACC 1 cut(s) 466
BstENI CCTNNNNNAGG 1 cut(s) 81
BstF5I GGATG 5 cut(s) 801, 1094, 1342, 1506, 1671
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 5 cut(s) 889, 955, 991, 1396, 1567
BstMAI GTCTC 3 cut(s) 442, 1193, 1519
BstMBI GATC 5 cut(s) 886, 952, 988, 1393, 1564
BstMWI GCNNNNNNNGC 3 cut(s) 263, 308, 1214
BstNI CCWGG 2 cut(s) 84, 1347
BstPAI GACNNNNGTC 1 cut(s) 396
BstPI GGTNACC 1 cut(s) 466
BstSCI CCNGG 4 cut(s) 82, 827, 828, 1345
BstSFI CTRYAG 2 cut(s) 1083, 1510
BstSLI GKGCMC 3 cut(s) 845, 898, 1344
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 3 cut(s) 734, 1265, 1633
BstV2I GAAGAC 2 cut(s) 1023, 1085
BstX2I RGATCY 2 cut(s) 988, 1393
BstYI RGATCY 2 cut(s) 988, 1393
Bsu15I ATCGAT 1 cut(s) 943
BsuRI GGCC 3 cut(s) 257, 546, 1270
BsuTUI ATCGAT 1 cut(s) 943
BtgZI GCGATG 1 cut(s) 1022
BtsCI GGATG 5 cut(s) 801, 1094, 1342, 1506, 1671
Cac8I GCNNGC 1 cut(s) 881
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 564
Cfr13I GGNCC 5 cut(s) 74, 95, 545, 693, 1269
Cfr9I CCCGGG 1 cut(s) 828
ClaI ATCGAT 1 cut(s) 943
Csp6I GTAC 7 cut(s) 348, 453, 686, 741, 966, 1058, 1330
CviAII CATG 6 cut(s) 351, 572, 679, 974, 1047, 1333
CviQI GTAC 7 cut(s) 348, 453, 686, 741, 966, 1058, 1330
DdeI CTNAG 4 cut(s) 91, 413, 924, 1440
DpnI GATC 5 cut(s) 888, 954, 990, 1395, 1566
DpnII GATC 5 cut(s) 886, 952, 988, 1393, 1564
Eam1104I CTCTTC 1 cut(s) 1035
EarI CTCTTC 1 cut(s) 1035
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 1 cut(s) 1519
Eco47I GGWCC 3 cut(s) 74, 95, 693
Eco88I CYCGRG 1 cut(s) 828
Eco91I GGTNACC 1 cut(s) 466
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoO109I RGGNCCY 2 cut(s) 74, 95
EcoO65I GGTNACC 1 cut(s) 466
EcoRI GAATTC 2 cut(s) 576, 1236
EcoRII CCWGG 2 cut(s) 82, 1345
EcoT38I GRGCYC 1 cut(s) 828
FaeI CATG 6 cut(s) 354, 575, 682, 977, 1050, 1336
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 2 cut(s) 233, 1413
FatI CATG 6 cut(s) 350, 571, 678, 973, 1046, 1332
FauNDI CATATG 3 cut(s) 133, 381, 1661
FbaI TGATCA 1 cut(s) 1564
Fnu4HI GCNGC 4 cut(s) 258, 723, 1254, 1647
FokI GGATG 5 cut(s) 788, 1101, 1349, 1513, 1678
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 4 cut(s) 258, 723, 1254, 1647
FspBI CTAG 4 cut(s) 116, 287, 1055, 1632
GlaI GCGC 1 cut(s) 312
GluI GCNGC 4 cut(s) 258, 723, 1254, 1647
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 3 cut(s) 257, 546, 1270
HapII CCGG 4 cut(s) 464, 471, 565, 829
HhaI GCGC 1 cut(s) 313
Hin1II CATG 6 cut(s) 354, 575, 682, 977, 1050, 1336
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HindIII AAGCTT 3 cut(s) 782, 881, 1112
HinfI GANTC 4 cut(s) 244, 512, 769, 1540
HpaII CCGG 4 cut(s) 464, 471, 565, 829
HphI GGTGA 3 cut(s) 217, 460, 766
Hpy166II GTNNAC 4 cut(s) 122, 283, 843, 1330
Hpy188I TCNGA 7 cut(s) 10, 376, 496, 520, 768, 780, 1235
Hpy188III TCNNGA 2 cut(s) 931, 1562
Hpy8I GTNNAC 4 cut(s) 122, 283, 843, 1330
HpyAV CCTTC 9 cut(s) 108, 319, 470, 756, 816, 928, 1384, 1438, 1602
HpyCH4III ACNGT 4 cut(s) 110, 1084, 1108, 1231
HpyCH4IV ACGT 4 cut(s) 418, 874, 1371, 1597
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 308, 1214
HpyF3I CTNAG 4 cut(s) 91, 413, 924, 1440
HpySE526I ACGT 4 cut(s) 418, 874, 1371, 1597
Hsp92II CATG 6 cut(s) 354, 575, 682, 977, 1050, 1336
HspAI GCGC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 1564
Kzo9I GATC 5 cut(s) 886, 952, 988, 1393, 1564
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 3 cut(s) 181, 823, 1051
Lsp1109I GCAGC 3 cut(s) 734, 1265, 1633
LweI GCATC 3 cut(s) 380, 1491, 1656
MaeI CTAG 4 cut(s) 116, 287, 1055, 1632
MaeII ACGT 4 cut(s) 418, 874, 1371, 1597
MaeIII GTNAC 6 cut(s) 34, 203, 334, 466, 567, 1367
MalI GATC 5 cut(s) 888, 954, 990, 1395, 1566
MbiI CCGCTC 1 cut(s) 184
MboI GATC 5 cut(s) 886, 952, 988, 1393, 1564
MboII GAAGA 6 cut(s) 507, 646, 1022, 1028, 1090, 1334
MfeI CAATTG 1 cut(s) 736
MflI RGATCY 2 cut(s) 988, 1393
MhlI GDGCHC 4 cut(s) 828, 845, 898, 1344
MmeI TCCRAC 3 cut(s) 482, 1051, 1598
MroXI GAANNNNTTC 2 cut(s) 657, 1029
MseI TTAA 7 cut(s) 342, 503, 1116, 1134, 1224, 1305, 1353
MslI CAYNNNNRTG 3 cut(s) 1337, 1535, 1664
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 4 cut(s) 464, 471, 565, 829
MspR9I CCNGG 4 cut(s) 84, 829, 830, 1347
MunI CAATTG 1 cut(s) 736
Mva1269I GAATGC 2 cut(s) 28, 1045
MvaI CCWGG 2 cut(s) 84, 1347
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 263, 308, 1214
NciI CCSGG 2 cut(s) 829, 830
NdeI CATATG 3 cut(s) 133, 381, 1661
NdeII GATC 5 cut(s) 886, 952, 988, 1393, 1564
NlaIII CATG 6 cut(s) 354, 575, 682, 977, 1050, 1336
NlaIV GGNNCC 3 cut(s) 75, 825, 990
NmuCI GTSAC 3 cut(s) 466, 567, 1367
PciSI GCTCTTC 1 cut(s) 1035
PctI GAATGC 2 cut(s) 28, 1045
PdmI GAANNNNTTC 2 cut(s) 657, 1029
PfeI GAWTC 4 cut(s) 244, 512, 769, 1540
PkrI GCNGC 4 cut(s) 259, 724, 1255, 1648
PpuMI RGGWCCY 2 cut(s) 74, 95
PshAI GACNNNNGTC 1 cut(s) 396
PshBI ATTAAT 2 cut(s) 1134, 1224
Psp5II RGGWCCY 2 cut(s) 74, 95
Psp6I CCWGG 2 cut(s) 82, 1345
PspEI GGTNACC 1 cut(s) 466
PspGI CCWGG 2 cut(s) 82, 1345
PspN4I GGNNCC 3 cut(s) 75, 825, 990
PspPI GGNCC 5 cut(s) 74, 95, 545, 693, 1269
PspPPI RGGWCCY 2 cut(s) 74, 95
PstI CTGCAG 1 cut(s) 1514
PsuI RGATCY 2 cut(s) 988, 1393
RsaI GTAC 7 cut(s) 349, 454, 687, 742, 967, 1059, 1331
RsaNI GTAC 7 cut(s) 348, 453, 686, 741, 966, 1058, 1330
RseI CAYNNNNRTG 3 cut(s) 1337, 1535, 1664
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 7 cut(s) 342, 503, 1116, 1134, 1224, 1305, 1353
SatI GCNGC 4 cut(s) 258, 723, 1254, 1647
Sau3AI GATC 5 cut(s) 886, 952, 988, 1393, 1564
Sau96I GGNCC 5 cut(s) 74, 95, 545, 693, 1269
ScrFI CCNGG 4 cut(s) 84, 829, 830, 1347
SduI GDGCHC 4 cut(s) 828, 845, 898, 1344
SfaNI GCATC 3 cut(s) 380, 1491, 1656
SfcI CTRYAG 2 cut(s) 1083, 1510
SinI GGWCC 3 cut(s) 74, 95, 693
SmaI CCCGGG 1 cut(s) 830
SmiMI CAYNNNNRTG 3 cut(s) 1337, 1535, 1664
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
SsiI CCGC 4 cut(s) 184, 236, 258, 300
SspMI CTAG 4 cut(s) 116, 287, 1055, 1632
StyD4I CCNGG 4 cut(s) 82, 827, 828, 1345
TaaI ACNGT 4 cut(s) 110, 1084, 1108, 1231
TaiI ACGT 4 cut(s) 421, 877, 1374, 1600
TaqI TCGA 1 cut(s) 943
TaqII GACCGA 1 cut(s) 681
TatI WGTACW 3 cut(s) 347, 740, 1329
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 4 cut(s) 244, 512, 769, 1540
Tru1I TTAA 7 cut(s) 342, 503, 1116, 1134, 1224, 1305, 1353
Tru9I TTAA 7 cut(s) 342, 503, 1116, 1134, 1224, 1305, 1353
TseFI GTSAC 3 cut(s) 466, 567, 1367
TseI GCWGC 3 cut(s) 722, 1253, 1646
Tsp45I GTSAC 3 cut(s) 466, 567, 1367
TspGWI ACGGA 2 cut(s) 646, 1001
TspMI CCCGGG 1 cut(s) 828
VneI GTGCAC 1 cut(s) 841
VpaK11BI GGWCC 3 cut(s) 74, 95, 693
VspI ATTAAT 2 cut(s) 1134, 1224
XagI CCTNNNNNAGG 1 cut(s) 81
XapI RAATTY 4 cut(s) 44, 576, 1236, 1312
XmaI CCCGGG 1 cut(s) 828
XmnI GAANNNNTTC 2 cut(s) 657, 1029
XspI CTAG 4 cut(s) 116, 287, 1055, 1632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.