Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 2 - 50 | 4.7e-07 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 265 |
| AccB1I | GGYRCC | 1 cut(s) | 265 |
| AciI | CCGC | 2 cut(s) | 124, 409 |
| AclWI | GGATC | 1 cut(s) | 525 |
| AcoI | YGGCCR | 1 cut(s) | 47 |
| AfaI | GTAC | 1 cut(s) | 267 |
| AflIII | ACRYGT | 1 cut(s) | 191 |
| AgeI | ACCGGT | 1 cut(s) | 211 |
| AgsI | TTSAA | 2 cut(s) | 202, 418 |
| AjnI | CCWGG | 1 cut(s) | 436 |
| AluBI | AGCT | 4 cut(s) | 248, 281, 320, 434 |
| AluI | AGCT | 4 cut(s) | 248, 281, 320, 434 |
| Alw21I | GWGCWC | 1 cut(s) | 283 |
| AlwI | GGATC | 1 cut(s) | 525 |
| AoxI | GGCC | 1 cut(s) | 47 |
| ApeKI | GCWGC | 1 cut(s) | 32 |
| AsiGI | ACCGGT | 1 cut(s) | 211 |
| Asp718I | GGTACC | 1 cut(s) | 265 |
| AspLEI | GCGC | 1 cut(s) | 306 |
| AsuHPI | GGTGA | 1 cut(s) | 370 |
| BalI | TGGCCA | 1 cut(s) | 49 |
| BanI | GGYRCC | 1 cut(s) | 265 |
| BanII | GRGCYC | 1 cut(s) | 283 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 119, 151 |
| BbsI | GAAGAC | 1 cut(s) | 194 |
| Bbv12I | GWGCWC | 1 cut(s) | 283 |
| BbvI | GCAGC | 1 cut(s) | 19 |
| BciT130I | CCWGG | 1 cut(s) | 438 |
| BciVI | GTATCC | 1 cut(s) | 264 |
| BfaI | CTAG | 2 cut(s) | 36, 327 |
| BfoI | RGCGCY | 1 cut(s) | 307 |
| BfuI | GTATCC | 1 cut(s) | 264 |
| BisI | GCNGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 1 cut(s) | 34 |
| Bme1390I | CCNGG | 1 cut(s) | 438 |
| BmiI | GGNNCC | 1 cut(s) | 267 |
| BmrFI | CCNGG | 1 cut(s) | 438 |
| BmsI | GCATC | 2 cut(s) | 184, 487 |
| BpiI | GAAGAC | 1 cut(s) | 194 |
| BpmI | CTGGAG | 1 cut(s) | 420 |
| BpuEI | CTTGAG | 2 cut(s) | 155, 497 |
| BsaBI | GATNNNNATC | 1 cut(s) | 535 |
| BsaJI | CCNNGG | 1 cut(s) | 99 |
| BsaWI | WCCGGW | 1 cut(s) | 211 |
| Bse118I | RCCGGY | 1 cut(s) | 211 |
| Bse1I | ACTGG | 1 cut(s) | 50 |
| Bse8I | GATNNNNATC | 1 cut(s) | 535 |
| BseBI | CCWGG | 1 cut(s) | 438 |
| BseDI | CCNNGG | 1 cut(s) | 99 |
| BseGI | GGATG | 1 cut(s) | 403 |
| BseJI | GATNNNNATC | 1 cut(s) | 535 |
| BseMII | CTCAG | 1 cut(s) | 240 |
| BseNI | ACTGG | 1 cut(s) | 50 |
| BseXI | GCAGC | 1 cut(s) | 19 |
| BshFI | GGCC | 1 cut(s) | 49 |
| BshNI | GGYRCC | 1 cut(s) | 265 |
| BshTI | ACCGGT | 1 cut(s) | 211 |
| BsiHKAI | GWGCWC | 1 cut(s) | 283 |
| BsiSI | CCGG | 1 cut(s) | 212 |
| BsmI | GAATGC | 1 cut(s) | 79 |
| BsnI | GGCC | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 3 cut(s) | 259, 274, 530 |
| BspACI | CCGC | 2 cut(s) | 124, 409 |
| BspANI | GGCC | 1 cut(s) | 49 |
| BspCNI | CTCAG | 1 cut(s) | 241 |
| BspLI | GGNNCC | 1 cut(s) | 267 |
| BspPI | GGATC | 1 cut(s) | 525 |
| BspT107I | GGYRCC | 1 cut(s) | 265 |
| BsrFI | RCCGGY | 1 cut(s) | 211 |
| BsrI | ACTGG | 1 cut(s) | 50 |
| BssAI | RCCGGY | 1 cut(s) | 211 |
| BssECI | CCNNGG | 1 cut(s) | 99 |
| BssMI | GATC | 3 cut(s) | 259, 274, 530 |
| Bst2UI | CCWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 1 cut(s) | 60 |
| Bst6I | CTCTTC | 1 cut(s) | 575 |
| BstDEI | CTNAG | 1 cut(s) | 249 |
| BstF5I | GGATG | 1 cut(s) | 403 |
| BstH2I | RGCGCY | 1 cut(s) | 307 |
| BstHHI | GCGC | 1 cut(s) | 306 |
| BstKTI | GATC | 3 cut(s) | 262, 277, 533 |
| BstMBI | GATC | 3 cut(s) | 259, 274, 530 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 506 |
| BstNI | CCWGG | 1 cut(s) | 438 |
| BstNSI | RCATGY | 1 cut(s) | 195 |
| BstSCI | CCNGG | 1 cut(s) | 436 |
| BstV1I | GCAGC | 1 cut(s) | 19 |
| BstV2I | GAAGAC | 1 cut(s) | 194 |
| BstX2I | RGATCY | 1 cut(s) | 530 |
| BstYI | RGATCY | 1 cut(s) | 530 |
| BsuI | GTATCC | 1 cut(s) | 264 |
| BsuRI | GGCC | 1 cut(s) | 49 |
| BtsCI | GGATG | 1 cut(s) | 403 |
| BtsI | GCAGTG | 1 cut(s) | 354 |
| BtsIMutI | CAGTG | 1 cut(s) | 354 |
| CfoI | GCGC | 1 cut(s) | 306 |
| Cfr10I | RCCGGY | 1 cut(s) | 211 |
| Csp6I | GTAC | 1 cut(s) | 266 |
| CspAI | ACCGGT | 1 cut(s) | 211 |
| CviAII | CATG | 6 cut(s) | 86, 121, 192, 370, 394, 576 |
| CviJI | RGCY | 8 cut(s) | 49, 98, 248, 281, 320, 434, 489, 509 |
| CviKI_1 | RGCY | 8 cut(s) | 49, 98, 248, 281, 320, 434, 489, 509 |
| CviQI | GTAC | 1 cut(s) | 266 |
| DdeI | CTNAG | 1 cut(s) | 249 |
| DpnI | GATC | 3 cut(s) | 261, 276, 532 |
| DpnII | GATC | 3 cut(s) | 259, 274, 530 |
| DraI | TTTAAA | 1 cut(s) | 42 |
| EaeI | YGGCCR | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 1 cut(s) | 575 |
| EarI | CTCTTC | 1 cut(s) | 575 |
| Ecl136II | GAGCTC | 1 cut(s) | 281 |
| Eco24I | GRGCYC | 1 cut(s) | 283 |
| Eco53kI | GAGCTC | 1 cut(s) | 281 |
| EcoICRI | GAGCTC | 1 cut(s) | 281 |
| EcoRII | CCWGG | 1 cut(s) | 436 |
| EcoT22I | ATGCAT | 2 cut(s) | 79, 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 283 |
| FaeI | CATG | 6 cut(s) | 89, 124, 195, 373, 397, 579 |
| FatI | CATG | 6 cut(s) | 85, 120, 191, 369, 393, 575 |
| FauNDI | CATATG | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 1 cut(s) | 33 |
| FokI | GGATG | 1 cut(s) | 410 |
| FriOI | GRGCYC | 1 cut(s) | 283 |
| Fsp4HI | GCNGC | 1 cut(s) | 33 |
| FspBI | CTAG | 2 cut(s) | 36, 327 |
| GlaI | GCGC | 1 cut(s) | 305 |
| GluI | GCNGC | 1 cut(s) | 33 |
| GsuI | CTGGAG | 1 cut(s) | 420 |
| HaeII | RGCGCY | 1 cut(s) | 307 |
| HaeIII | GGCC | 1 cut(s) | 49 |
| HapII | CCGG | 1 cut(s) | 212 |
| HhaI | GCGC | 1 cut(s) | 306 |
| Hin1II | CATG | 6 cut(s) | 89, 124, 195, 373, 397, 579 |
| Hin6I | GCGC | 1 cut(s) | 304 |
| HinP1I | GCGC | 1 cut(s) | 304 |
| HinfI | GANTC | 2 cut(s) | 361, 388 |
| HpaII | CCGG | 1 cut(s) | 212 |
| HphI | GGTGA | 1 cut(s) | 370 |
| Hpy188I | TCNGA | 4 cut(s) | 56, 154, 291, 381 |
| Hpy188III | TCNNGA | 3 cut(s) | 70, 257, 476 |
| HpyAV | CCTTC | 2 cut(s) | 121, 435 |
| HpyCH4III | ACNGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 6 cut(s) | 77, 207, 341, 347, 373, 500 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 506 |
| HpyF3I | CTNAG | 1 cut(s) | 249 |
| Hsp92II | CATG | 6 cut(s) | 89, 124, 195, 373, 397, 579 |
| HspAI | GCGC | 1 cut(s) | 304 |
| KpnI | GGTACC | 1 cut(s) | 269 |
| Kzo9I | GATC | 3 cut(s) | 259, 274, 530 |
| LmnI | GCTCC | 1 cut(s) | 439 |
| Lsp1109I | GCAGC | 1 cut(s) | 19 |
| LweI | GCATC | 2 cut(s) | 184, 487 |
| MaeI | CTAG | 2 cut(s) | 36, 327 |
| MaeIII | GTNAC | 4 cut(s) | 134, 389, 542, 571 |
| MalI | GATC | 3 cut(s) | 261, 276, 532 |
| MboI | GATC | 3 cut(s) | 259, 274, 530 |
| MboII | GAAGA | 3 cut(s) | 74, 199, 592 |
| MflI | RGATCY | 1 cut(s) | 530 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MlsI | TGGCCA | 1 cut(s) | 49 |
| MluCI | AATT | 3 cut(s) | 116, 202, 565 |
| MluNI | TGGCCA | 1 cut(s) | 49 |
| MlyI | GAGTC | 2 cut(s) | 370, 397 |
| MmeI | TCCRAC | 2 cut(s) | 79, 177 |
| MnlI | CCTC | 5 cut(s) | 94, 179, 285, 472, 554 |
| Mox20I | TGGCCA | 1 cut(s) | 49 |
| Mph1103I | ATGCAT | 2 cut(s) | 79, 375 |
| MscI | TGGCCA | 1 cut(s) | 49 |
| MseI | TTAA | 2 cut(s) | 41, 425 |
| MslI | CAYNNNNRTG | 1 cut(s) | 396 |
| Msp20I | TGGCCA | 1 cut(s) | 49 |
| MspI | CCGG | 1 cut(s) | 212 |
| MspR9I | CCNGG | 1 cut(s) | 438 |
| MssI | GTTTAAAC | 1 cut(s) | 42 |
| Mva1269I | GAATGC | 1 cut(s) | 79 |
| MvaI | CCWGG | 1 cut(s) | 438 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 506 |
| NdeI | CATATG | 1 cut(s) | 343 |
| NdeII | GATC | 3 cut(s) | 259, 274, 530 |
| NlaIII | CATG | 6 cut(s) | 89, 124, 195, 373, 397, 579 |
| NlaIV | GGNNCC | 1 cut(s) | 267 |
| NmeAIII | GCCGAG | 1 cut(s) | 124 |
| NmuCI | GTSAC | 1 cut(s) | 389 |
| NsiI | ATGCAT | 2 cut(s) | 79, 375 |
| NspI | RCATGY | 1 cut(s) | 195 |
| PciI | ACATGT | 1 cut(s) | 191 |
| PctI | GAATGC | 1 cut(s) | 79 |
| PfoI | TCCNGGA | 1 cut(s) | 436 |
| PinAI | ACCGGT | 1 cut(s) | 211 |
| PkrI | GCNGC | 1 cut(s) | 34 |
| PleI | GAGTC | 2 cut(s) | 369, 396 |
| PmeI | GTTTAAAC | 1 cut(s) | 42 |
| PpsI | GAGTC | 2 cut(s) | 369, 396 |
| PscI | ACATGT | 1 cut(s) | 191 |
| Psp124BI | GAGCTC | 1 cut(s) | 283 |
| Psp6I | CCWGG | 1 cut(s) | 436 |
| PspGI | CCWGG | 1 cut(s) | 436 |
| PspN4I | GGNNCC | 1 cut(s) | 267 |
| PsuI | RGATCY | 1 cut(s) | 530 |
| RsaI | GTAC | 1 cut(s) | 267 |
| RsaNI | GTAC | 1 cut(s) | 266 |
| RseI | CAYNNNNRTG | 1 cut(s) | 396 |
| SacI | GAGCTC | 1 cut(s) | 283 |
| SaqAI | TTAA | 2 cut(s) | 41, 425 |
| SatI | GCNGC | 1 cut(s) | 33 |
| Sau3AI | GATC | 3 cut(s) | 259, 274, 530 |
| SchI | GAGTC | 2 cut(s) | 370, 397 |
| ScrFI | CCNGG | 1 cut(s) | 438 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SfaNI | GCATC | 2 cut(s) | 184, 487 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 396 |
| SmlI | CTYRAG | 2 cut(s) | 170, 476 |
| SmoI | CTYRAG | 2 cut(s) | 170, 476 |
| Sse9I | AATT | 3 cut(s) | 116, 202, 565 |
| SsiI | CCGC | 2 cut(s) | 124, 409 |
| SspI | AATATT | 2 cut(s) | 472, 517 |
| SspMI | CTAG | 2 cut(s) | 36, 327 |
| SstI | GAGCTC | 1 cut(s) | 283 |
| StyD4I | CCNGG | 1 cut(s) | 436 |
| TaaI | ACNGT | 1 cut(s) | 60 |
| TaqI | TCGA | 1 cut(s) | 277 |
| TasI | AATT | 3 cut(s) | 116, 202, 565 |
| Tru1I | TTAA | 2 cut(s) | 41, 425 |
| Tru9I | TTAA | 2 cut(s) | 41, 425 |
| TscAI | CASTG | 1 cut(s) | 354 |
| TseFI | GTSAC | 1 cut(s) | 389 |
| TseI | GCWGC | 1 cut(s) | 32 |
| Tsp45I | GTSAC | 1 cut(s) | 389 |
| TspDTI | ATGAA | 4 cut(s) | 17, 74, 109, 358 |
| TspRI | CASTG | 1 cut(s) | 354 |
| XceI | RCATGY | 1 cut(s) | 195 |
| XspI | CTAG | 2 cut(s) | 36, 327 |
| Zsp2I | ATGCAT | 2 cut(s) | 79, 375 |