RchiOBHm_Chr5g0010831

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000071
Physical Location & Seq
Forward (+)
7126550 .. 7129839
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29155

Sequence Viewer

Length: 1728 bp
ATGTTGAAGGTTCAAGCTGTATCTGAGGTCCACACCGAGAGCCTTCTCACACTGGTGCTCATTCGTGCTGATAATGGTGCTGAGTTCATTTCTATGCGTTCATTTTTCAATGATTTGGGAATTGTTTTTCAACATTCTTGCACCTCAACGCCCCAAAAAAATGGTGTCGTTGAGCGCAAACATCGTCATCTTCTAAATGTTGCCCGTGCTTTGCGCTTTCAAGCACATCTCCCTTTAACTTTTTGGGGAGAGTGTGTCCAAACAGCTGCATATATTATTAATCGTTTGCCCACATTACTTCTTTCAAAATGTTTACCTTTTGAAGTACTTTACCAAAAAGCACCTGAGTACCAACATTTTCGTGTATTTAGTTGTTTATGTTATGCAACTAACCCTAAACCTTCTCAAAAGTTTGATTCACAAGCTAGAAAATGTATTTTTGTGGGCTATCCTTTGGGTCAAAAGGCTTACCGGTTATATGATTTAACATGTAAAACAATTTTTTCTAGTCATGATGTTGTTTTTCATGAAAATCTGTTTCCCTATTCCACCATGCCACACGACCTACTCGATGATGCAACGTTACCATTACCTGTACCTGATGTCTCTCAACCATCTTCTACCATCACTCTACCTCCACATACAAATCCTCCTACCACTACTTCAGCTGCAGATCCTCCAACTATCATTTCACCCACAGATCCTTCAACTACAAATCCTCCTACTCCACCTACAAATACACCTACCATCACTCTAAATGAATCCCTTCCCAATGAACTCACACCTACCATTCCTCCAAATGAACCTTTGGACCCATCACCACCTCCTTCTGAAGTTGTGCCCCGCCGTAGTACCCGTGAGCATCAACCATCAGTACTCCTCCGTGATTTTCATTGCTCACAAGTTATTTCTGATGCTCCTAGGTCAACATCTTCTTCGGGGTCAGAAAATATACTCTTGATCTTCTTGATGATGCTGGTTTACTTAAAATTTCTTATGGAGCAGAACTTGAAATTGACTGCAACACATGGAGAGATTCTCAAAGACCCTTCACGATATAGGAGGTTGGTTGGTCGTCTCATTTATCTCACAGTCACAAGGCCCGACATCACATATTCAGTTCATATCCTCAGTCAATTCATGCATCAACCTAGAAAACCCCATTTTGAGGCAGCATTACGAGTTTTAAGATATCTAAAAGGCACACCAGGTCAGGGTTTATTGTTTCCATCACAAAGTTCTTTAAAGCTAAAAGGCTATTGTGATGCAAATTGGGGTGGTTGCCCCACAACAAGGAGATCAGTTTCTGGTTATTGTATTTTCCTTTGTGATTCTCTTACCTCTTGGAAATCCAAGAAACAAGGTGTTGTATCTCGCTCATCAGTAGAAGCAGAGTATCGTTCTATGGCCTTTGCTACTTGTGAAGTCACTTGGTTCAAATATCTTCTTCATGATTTACAAGTACATCATCCAAAACCTGCAAGGTTGGTTTGTGACAACCAAGCTGCTCTATATATAGCAGCAAATCTTGTATTTCATGAGCGCACTAAACACATTGAAATGGATTGTCATGTTGTTCGTGAAAGAATTCAAATGGGAGTGATTGCAACAGCCTATACGCCATCTACCCAACAGGTTGCAGACATATTTACCAAGCCCCTAGGTGCTACGCTTTTCCATTCACATTCACGCAAGTTGGGCATTCTAGACATTCATGCTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

575

Amino Acids

64.66

Weight (kDa)

8.91

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 125 - 184 2.2e-21 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1486
AciI CCGC 1 cut(s) 844
AclI AACGTT 1 cut(s) 581
AclWI GGATC 2 cut(s) 668, 695
AcsI RAATTY 2 cut(s) 989, 1587
AcuI CTGAAG 2 cut(s) 648, 852
AfaI GTAC 6 cut(s) 327, 350, 597, 853, 876, 1464
AfiI CCNNNNNNNGG 3 cut(s) 1168, 1214, 1293
AflIII ACRYGT 1 cut(s) 488
AgeI ACCGGT 1 cut(s) 471
AjnI CCWGG 1 cut(s) 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 6 cut(s) 17, 266, 425, 668, 1249, 1505
AluI AGCT 6 cut(s) 17, 266, 425, 668, 1249, 1505
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 2 cut(s) 610, 1082
AlwI GGATC 2 cut(s) 668, 695
AlwNI CAGNNNCTG 1 cut(s) 1307
AoxI GGCC 2 cut(s) 1100, 1407
ApeKI GCWGC 5 cut(s) 266, 668, 1172, 1505, 1520
ApoI RAATTY 2 cut(s) 989, 1587
AseI ATTAAT 1 cut(s) 279
AsiGI ACCGGT 1 cut(s) 471
Asp700I GAANNNNTTC 2 cut(s) 765, 1587
AspA2I CCTAGG 2 cut(s) 920, 1660
AspLEI GCGC 3 cut(s) 177, 216, 1545
AspS9I GGNCC 3 cut(s) 28, 811, 1101
AsuHPI GGTGA 2 cut(s) 684, 810
AvaII GGWCC 2 cut(s) 28, 811
AvrII CCTAGG 2 cut(s) 920, 1660
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 332, 365
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 5 cut(s) 253, 655, 1184, 1492, 1532
BccI CCATC 7 cut(s) 622, 632, 755, 823, 877, 1237, 1630
BceAI ACGGC 1 cut(s) 831
BciT130I CCWGG 1 cut(s) 1209
BcoDI GTCTC 2 cut(s) 610, 1082
BfaI CTAG 6 cut(s) 426, 507, 921, 1152, 1661, 1706
BfmI CTRYAG 1 cut(s) 669
BfuAI ACCTGC 1 cut(s) 1486
BisI GCNGC 5 cut(s) 267, 669, 1173, 1506, 1521
BlnI CCTAGG 2 cut(s) 920, 1660
BlsI GCNGC 5 cut(s) 268, 670, 1174, 1507, 1522
BmcAI AGTACT 2 cut(s) 327, 876
Bme1390I CCNGG 1 cut(s) 1209
Bme18I GGWCC 2 cut(s) 28, 811
BmgT120I GGNCC 3 cut(s) 28, 811, 1101
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 1 cut(s) 1209
BmsI GCATC 6 cut(s) 565, 871, 904, 963, 1153, 1255
BplI GAGNNNNNCTC 2 cut(s) 1023, 1055
BsaJI CCNNGG 2 cut(s) 920, 1660
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 3 cut(s) 1168, 1214, 1293
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 892
BseBI CCWGG 1 cut(s) 1209
BseDI CCNNGG 2 cut(s) 920, 1660
BseGI GGATG 1 cut(s) 1468
BseLI CCNNNNNNNGG 3 cut(s) 1168, 1214, 1293
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 4 cut(s) 15, 72, 336, 1144
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 869
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 5 cut(s) 253, 655, 1184, 1492, 1532
BshFI GGCC 2 cut(s) 1102, 1409
BshTI ACCGGT 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 472
BslI CCNNNNNNNGG 3 cut(s) 1168, 1214, 1293
BsmAI GTCTC 2 cut(s) 610, 1082
BsmBI CGTCTC 1 cut(s) 1082
BsmI GAATGC 1 cut(s) 1701
BsnI GGCC 2 cut(s) 1102, 1409
Bsp1286I GDGCHC 2 cut(s) 60, 843
Bsp143I GATC 4 cut(s) 673, 700, 960, 1298
BspACI CCGC 1 cut(s) 844
BspANI GGCC 2 cut(s) 1102, 1409
BspCNI CTCAG 4 cut(s) 16, 73, 337, 1143
BspHI TCATGA 4 cut(s) 511, 526, 1450, 1537
BspLI GGNNCC 1 cut(s) 813
BspMAI CTGCAG 1 cut(s) 673
BspMI ACCTGC 1 cut(s) 1486
BspPI GGATC 2 cut(s) 668, 695
BsrDI GCAATG 1 cut(s) 892
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 920, 1660
BssMI GATC 4 cut(s) 673, 700, 960, 1298
BssT1I CCWWGG 2 cut(s) 920, 1660
Bst2UI CCWGG 1 cut(s) 1209
Bst4CI ACNGT 1 cut(s) 1093
BstDEI CTNAG 4 cut(s) 24, 81, 345, 1130
BstF5I GGATG 1 cut(s) 1468
BstHHI GCGC 3 cut(s) 177, 216, 1545
BstKTI GATC 4 cut(s) 676, 703, 963, 1301
BstMAI GTCTC 2 cut(s) 610, 1082
BstMBI GATC 4 cut(s) 673, 700, 960, 1298
BstMWI GCNNNNNNNGC 1 cut(s) 1698
BstNI CCWGG 1 cut(s) 1209
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 1207
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 5 cut(s) 253, 655, 1184, 1492, 1532
BstX2I RGATCY 2 cut(s) 673, 700
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 2 cut(s) 673, 700
BsuRI GGCC 2 cut(s) 1102, 1409
BtsCI GGATG 1 cut(s) 1468
BtsIMutI CAGTG 1 cut(s) 50
BveI ACCTGC 1 cut(s) 1486
CaiI CAGNNNCTG 1 cut(s) 1307
CciI TCATGA 4 cut(s) 511, 526, 1450, 1537
CfoI GCGC 3 cut(s) 177, 216, 1545
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 3 cut(s) 28, 811, 1101
CsiI ACCWGGT 1 cut(s) 1207
Csp6I GTAC 6 cut(s) 326, 349, 596, 852, 875, 1463
CspAI ACCGGT 1 cut(s) 471
CviQI GTAC 6 cut(s) 326, 349, 596, 852, 875, 1463
DdeI CTNAG 4 cut(s) 24, 81, 345, 1130
DpnI GATC 4 cut(s) 675, 702, 962, 1300
DpnII GATC 4 cut(s) 673, 700, 960, 1298
DraI TTTAAA 1 cut(s) 1245
Eco130I CCWWGG 2 cut(s) 920, 1660
Eco32I GATATC 1 cut(s) 1193
Eco47I GGWCC 2 cut(s) 28, 811
Eco57I CTGAAG 2 cut(s) 648, 852
EcoRI GAATTC 1 cut(s) 1587
EcoRII CCWGG 1 cut(s) 1207
EcoRV GATATC 1 cut(s) 1193
EcoT14I CCWWGG 2 cut(s) 920, 1660
EcoT22I ATGCAT 1 cut(s) 1146
ErhI CCWWGG 2 cut(s) 920, 1660
Esp3I CGTCTC 1 cut(s) 1082
FauI CCCGC 1 cut(s) 851
Fnu4HI GCNGC 5 cut(s) 267, 669, 1173, 1506, 1521
FokI GGATG 1 cut(s) 1455
Fsp4HI GCNGC 5 cut(s) 267, 669, 1173, 1506, 1521
FspBI CTAG 6 cut(s) 426, 507, 921, 1152, 1661, 1706
GlaI GCGC 3 cut(s) 176, 215, 1544
GluI GCNGC 5 cut(s) 267, 669, 1173, 1506, 1521
HaeIII GGCC 2 cut(s) 1102, 1409
HapII CCGG 1 cut(s) 472
HhaI GCGC 3 cut(s) 177, 216, 1545
Hin6I GCGC 3 cut(s) 175, 214, 1543
HinP1I GCGC 3 cut(s) 175, 214, 1543
HincII GTYRAC 1 cut(s) 927
HindII GTYRAC 1 cut(s) 927
HinfI GANTC 4 cut(s) 416, 761, 1036, 1331
HpaII CCGG 1 cut(s) 472
HphI GGTGA 2 cut(s) 684, 810
Hpy166II GTNNAC 4 cut(s) 31, 314, 927, 982
Hpy188I TCNGA 4 cut(s) 25, 832, 913, 946
Hpy188III TCNNGA 9 cut(s) 512, 527, 958, 967, 1053, 1451, 1538, 1580, 1706
Hpy8I GTNNAC 4 cut(s) 31, 314, 927, 982
HpyAV CCTTC 6 cut(s) 53, 411, 714, 776, 837, 1059
HpyCH4III ACNGT 1 cut(s) 1093
HpyCH4IV ACGT 1 cut(s) 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 1698
HpyF3I CTNAG 4 cut(s) 24, 81, 345, 1130
HpySE526I ACGT 1 cut(s) 581
HspAI GCGC 3 cut(s) 175, 214, 1543
Kzo9I GATC 4 cut(s) 673, 700, 960, 1298
LmnI GCTCC 3 cut(s) 922, 1000, 1723
Lsp1109I GCAGC 5 cut(s) 253, 655, 1184, 1492, 1532
LweI GCATC 6 cut(s) 565, 871, 904, 963, 1153, 1255
MabI ACCWGGT 1 cut(s) 1207
MaeI CTAG 6 cut(s) 426, 507, 921, 1152, 1661, 1706
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 4 cut(s) 582, 1093, 1426, 1493
MalI GATC 4 cut(s) 675, 702, 962, 1300
MboI GATC 4 cut(s) 673, 700, 960, 1298
MboII GAAGA 7 cut(s) 182, 609, 924, 927, 955, 1436, 1439
MflI RGATCY 2 cut(s) 673, 700
MhlI GDGCHC 2 cut(s) 60, 843
MluCI AATT 7 cut(s) 120, 498, 989, 1013, 1136, 1270, 1587
MmeI TCCRAC 1 cut(s) 704
Mph1103I ATGCAT 1 cut(s) 1146
MroXI GAANNNNTTC 2 cut(s) 765, 1587
MseI TTAA 6 cut(s) 236, 279, 485, 986, 1187, 1244
MslI CAYNNNNRTG 4 cut(s) 53, 92, 360, 1559
MspA1I CMGCKG 2 cut(s) 266, 668
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 1209
Mva1269I GAATGC 1 cut(s) 1701
MvaI CCWGG 1 cut(s) 1209
MwoI GCNNNNNNNGC 1 cut(s) 1698
NdeII GATC 4 cut(s) 673, 700, 960, 1298
NlaIV GGNNCC 1 cut(s) 813
NmuCI GTSAC 3 cut(s) 1093, 1426, 1493
NsiI ATGCAT 1 cut(s) 1146
NspI RCATGY 1 cut(s) 492
OliI CACNNNNGTG 1 cut(s) 53
PagI TCATGA 4 cut(s) 511, 526, 1450, 1537
PciI ACATGT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PctI GAATGC 1 cut(s) 1701
PdmI GAANNNNTTC 2 cut(s) 765, 1587
PfeI GAWTC 4 cut(s) 416, 761, 1036, 1331
PinAI ACCGGT 1 cut(s) 471
PkrI GCNGC 5 cut(s) 268, 670, 1174, 1507, 1522
PscI ACATGT 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 279
Psp1406I AACGTT 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 1207
PspGI CCWGG 1 cut(s) 1207
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 3 cut(s) 28, 811, 1101
PstI CTGCAG 1 cut(s) 673
PstNI CAGNNNCTG 1 cut(s) 1307
PsuI RGATCY 2 cut(s) 673, 700
PvuII CAGCTG 2 cut(s) 266, 668
RsaI GTAC 6 cut(s) 327, 350, 597, 853, 876, 1464
RsaNI GTAC 6 cut(s) 326, 349, 596, 852, 875, 1463
RseI CAYNNNNRTG 4 cut(s) 53, 92, 360, 1559
SaqAI TTAA 6 cut(s) 236, 279, 485, 986, 1187, 1244
SatI GCNGC 5 cut(s) 267, 669, 1173, 1506, 1521
Sau3AI GATC 4 cut(s) 673, 700, 960, 1298
Sau96I GGNCC 3 cut(s) 28, 811, 1101
ScaI AGTACT 2 cut(s) 327, 876
ScrFI CCNGG 1 cut(s) 1209
SduI GDGCHC 2 cut(s) 60, 843
SexAI ACCWGGT 1 cut(s) 1207
SfaNI GCATC 6 cut(s) 565, 871, 904, 963, 1153, 1255
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 2 cut(s) 28, 811
SmiMI CAYNNNNRTG 4 cut(s) 53, 92, 360, 1559
Sse9I AATT 7 cut(s) 120, 498, 989, 1013, 1136, 1270, 1587
SsiI CCGC 1 cut(s) 844
SspMI CTAG 6 cut(s) 426, 507, 921, 1152, 1661, 1706
StyD4I CCNGG 1 cut(s) 1207
StyI CCWWGG 2 cut(s) 920, 1660
TaaI ACNGT 1 cut(s) 1093
TaiI ACGT 1 cut(s) 584
TaqI TCGA 1 cut(s) 570
TasI AATT 7 cut(s) 120, 498, 989, 1013, 1136, 1270, 1587
TatI WGTACW 3 cut(s) 325, 874, 1462
TfiI GAWTC 4 cut(s) 416, 761, 1036, 1331
Tru1I TTAA 6 cut(s) 236, 279, 485, 986, 1187, 1244
Tru9I TTAA 6 cut(s) 236, 279, 485, 986, 1187, 1244
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 3 cut(s) 1093, 1426, 1493
TseI GCWGC 5 cut(s) 266, 668, 1172, 1505, 1520
Tsp45I GTSAC 3 cut(s) 1093, 1426, 1493
TspGWI ACGGA 1 cut(s) 872
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 28, 811
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 2 cut(s) 989, 1587
XbaI TCTAGA 1 cut(s) 1705
XceI RCATGY 1 cut(s) 492
XmaJI CCTAGG 2 cut(s) 920, 1660
XmnI GAANNNNTTC 2 cut(s) 765, 1587
XspI CTAG 6 cut(s) 426, 507, 921, 1152, 1661, 1706
ZrmI AGTACT 2 cut(s) 327, 876
Zsp2I ATGCAT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.