Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 2 - 96 | 2e-16 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 440 |
| Acc65I | GGTACC | 1 cut(s) | 15 |
| AccB1I | GGYRCC | 1 cut(s) | 15 |
| AccI | GTMKAC | 1 cut(s) | 473 |
| AciI | CCGC | 1 cut(s) | 656 |
| AcsI | RAATTY | 2 cut(s) | 161, 613 |
| AcuI | CTGAAG | 1 cut(s) | 462 |
| AfaI | GTAC | 1 cut(s) | 17 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 329, 386 |
| AflIII | ACRYGT | 1 cut(s) | 278 |
| AgsI | TTSAA | 5 cut(s) | 134, 190, 209, 402, 637 |
| AjnI | CCWGG | 1 cut(s) | 379 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 182, 214 |
| Ama87I | CYCGRG | 1 cut(s) | 582 |
| AoxI | GGCC | 1 cut(s) | 579 |
| ApeKI | GCWGC | 1 cut(s) | 675 |
| ApoI | RAATTY | 2 cut(s) | 161, 613 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 194 |
| Asp718I | GGTACC | 1 cut(s) | 15 |
| AspS9I | GGNCC | 1 cut(s) | 580 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| AvaI | CYCGRG | 1 cut(s) | 582 |
| BanI | GGYRCC | 1 cut(s) | 15 |
| BauI | CACGAG | 1 cut(s) | 216 |
| BbvI | GCAGC | 1 cut(s) | 662 |
| BciT130I | CCWGG | 1 cut(s) | 381 |
| BclI | TGATCA | 1 cut(s) | 34 |
| BfaI | CTAG | 3 cut(s) | 260, 426, 552 |
| BfuAI | ACCTGC | 1 cut(s) | 440 |
| BisI | GCNGC | 2 cut(s) | 656, 676 |
| BlsI | GCNGC | 2 cut(s) | 657, 677 |
| Bme1390I | CCNGG | 1 cut(s) | 381 |
| BmeT110I | CYCGRG | 1 cut(s) | 582 |
| BmgT120I | GGNCC | 1 cut(s) | 580 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BmrFI | CCNGG | 1 cut(s) | 381 |
| BmrI | ACTGGG | 2 cut(s) | 318, 454 |
| BmsI | GCATC | 1 cut(s) | 427 |
| BmuI | ACTGGG | 2 cut(s) | 318, 454 |
| BpmI | CTGGAG | 1 cut(s) | 363 |
| BsaAI | YACGTR | 1 cut(s) | 516 |
| BsaJI | CCNNGG | 2 cut(s) | 380, 583 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 329, 386 |
| Bse118I | RCCGGY | 2 cut(s) | 18, 468 |
| Bse1I | ACTGG | 2 cut(s) | 324, 449 |
| BseBI | CCWGG | 1 cut(s) | 381 |
| BseDI | CCNNGG | 2 cut(s) | 380, 583 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 329, 386 |
| BseMII | CTCAG | 1 cut(s) | 585 |
| BseNI | ACTGG | 2 cut(s) | 324, 449 |
| BseRI | GAGGAG | 1 cut(s) | 140 |
| BseXI | GCAGC | 1 cut(s) | 662 |
| BsgI | GTGCAG | 1 cut(s) | 576 |
| BshFI | GGCC | 1 cut(s) | 581 |
| BshNI | GGYRCC | 1 cut(s) | 15 |
| BsiHKCI | CYCGRG | 1 cut(s) | 582 |
| BsiSI | CCGG | 2 cut(s) | 19, 469 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 329, 386 |
| BsnI | GGCC | 1 cut(s) | 581 |
| BsoBI | CYCGRG | 1 cut(s) | 582 |
| Bsp143I | GATC | 2 cut(s) | 34, 409 |
| BspACI | CCGC | 1 cut(s) | 656 |
| BspANI | GGCC | 1 cut(s) | 581 |
| BspCNI | CTCAG | 1 cut(s) | 586 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspMI | ACCTGC | 1 cut(s) | 440 |
| BspQI | GCTCTTC | 1 cut(s) | 515 |
| BspT107I | GGYRCC | 1 cut(s) | 15 |
| BsrFI | RCCGGY | 2 cut(s) | 18, 468 |
| BsrI | ACTGG | 2 cut(s) | 324, 449 |
| BssAI | RCCGGY | 2 cut(s) | 18, 468 |
| BssECI | CCNNGG | 2 cut(s) | 380, 583 |
| BssMI | GATC | 2 cut(s) | 34, 409 |
| BssSI | CACGAG | 1 cut(s) | 216 |
| Bst2BI | CACGAG | 1 cut(s) | 216 |
| Bst2UI | CCWGG | 1 cut(s) | 381 |
| Bst6I | CTCTTC | 1 cut(s) | 515 |
| BstBAI | YACGTR | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 1 cut(s) | 270 |
| BstDEI | CTNAG | 2 cut(s) | 415, 594 |
| BstKTI | GATC | 2 cut(s) | 37, 412 |
| BstMBI | GATC | 2 cut(s) | 34, 409 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 446 |
| BstNI | CCWGG | 1 cut(s) | 381 |
| BstNSI | RCATGY | 1 cut(s) | 282 |
| BstSCI | CCNGG | 1 cut(s) | 379 |
| BstV1I | GCAGC | 1 cut(s) | 662 |
| BsuRI | GGCC | 1 cut(s) | 581 |
| BtsIMutI | CAGTG | 1 cut(s) | 331 |
| BveI | ACCTGC | 1 cut(s) | 440 |
| Cac8I | GCNNGC | 1 cut(s) | 270 |
| Cfr10I | RCCGGY | 2 cut(s) | 18, 468 |
| Cfr13I | GGNCC | 1 cut(s) | 580 |
| Csp6I | GTAC | 1 cut(s) | 16 |
| CviAII | CATG | 2 cut(s) | 100, 279 |
| CviJI | RGCY | 5 cut(s) | 483, 545, 581, 650, 675 |
| CviKI_1 | RGCY | 5 cut(s) | 483, 545, 581, 650, 675 |
| CviQI | GTAC | 1 cut(s) | 16 |
| DdeI | CTNAG | 2 cut(s) | 415, 594 |
| DpnI | GATC | 2 cut(s) | 36, 411 |
| DpnII | GATC | 2 cut(s) | 34, 409 |
| DraI | TTTAAA | 1 cut(s) | 369 |
| Eam1104I | CTCTTC | 1 cut(s) | 515 |
| EarI | CTCTTC | 1 cut(s) | 515 |
| Eco57I | CTGAAG | 1 cut(s) | 462 |
| Eco88I | CYCGRG | 1 cut(s) | 582 |
| EcoRII | CCWGG | 1 cut(s) | 379 |
| EcoT22I | ATGCAT | 1 cut(s) | 318 |
| FaeI | CATG | 2 cut(s) | 103, 282 |
| FatI | CATG | 2 cut(s) | 99, 278 |
| FauNDI | CATATG | 1 cut(s) | 336 |
| FbaI | TGATCA | 1 cut(s) | 34 |
| FblI | GTMKAC | 1 cut(s) | 473 |
| Fnu4HI | GCNGC | 2 cut(s) | 656, 676 |
| Fsp4HI | GCNGC | 2 cut(s) | 656, 676 |
| FspBI | CTAG | 3 cut(s) | 260, 426, 552 |
| GluI | GCNGC | 2 cut(s) | 656, 676 |
| GsuI | CTGGAG | 1 cut(s) | 363 |
| HaeIII | GGCC | 1 cut(s) | 581 |
| HapII | CCGG | 2 cut(s) | 19, 469 |
| Hin1II | CATG | 2 cut(s) | 103, 282 |
| HinfI | GANTC | 3 cut(s) | 130, 241, 304 |
| HpaII | CCGG | 2 cut(s) | 19, 469 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy166II | GTNNAC | 1 cut(s) | 474 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 160, 595 |
| Hpy188III | TCNNGA | 2 cut(s) | 260, 426 |
| Hpy8I | GTNNAC | 1 cut(s) | 474 |
| HpyAV | CCTTC | 2 cut(s) | 379, 529 |
| HpyCH4IV | ACGT | 2 cut(s) | 55, 515 |
| HpyCH4V | TGCA | 4 cut(s) | 316, 440, 557, 678 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 446 |
| HpyF3I | CTNAG | 2 cut(s) | 415, 594 |
| HpySE526I | ACGT | 2 cut(s) | 55, 515 |
| Hsp92II | CATG | 2 cut(s) | 103, 282 |
| KpnI | GGTACC | 1 cut(s) | 19 |
| Ksp22I | TGATCA | 1 cut(s) | 34 |
| Kzo9I | GATC | 2 cut(s) | 34, 409 |
| LguI | GCTCTTC | 1 cut(s) | 515 |
| LmnI | GCTCC | 1 cut(s) | 382 |
| Lsp1109I | GCAGC | 1 cut(s) | 662 |
| LweI | GCATC | 1 cut(s) | 427 |
| MaeI | CTAG | 3 cut(s) | 260, 426, 552 |
| MaeII | ACGT | 2 cut(s) | 55, 515 |
| MaeIII | GTNAC | 6 cut(s) | 70, 106, 138, 182, 503, 511 |
| MalI | GATC | 2 cut(s) | 36, 411 |
| MboI | GATC | 2 cut(s) | 34, 409 |
| MboII | GAAGA | 3 cut(s) | 16, 147, 532 |
| MfeI | CAATTG | 1 cut(s) | 679 |
| MluCI | AATT | 7 cut(s) | 9, 28, 161, 204, 393, 613, 679 |
| MlyI | GAGTC | 2 cut(s) | 250, 313 |
| MnlI | CCTC | 6 cut(s) | 59, 118, 322, 354, 566, 578 |
| Mph1103I | ATGCAT | 1 cut(s) | 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 194 |
| MseI | TTAA | 2 cut(s) | 368, 392 |
| MslI | CAYNNNNRTG | 2 cut(s) | 104, 339 |
| MspI | CCGG | 2 cut(s) | 19, 469 |
| MspR9I | CCNGG | 1 cut(s) | 381 |
| MunI | CAATTG | 1 cut(s) | 679 |
| MvaI | CCWGG | 1 cut(s) | 381 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 446 |
| NdeI | CATATG | 1 cut(s) | 336 |
| NdeII | GATC | 2 cut(s) | 34, 409 |
| NlaIII | CATG | 2 cut(s) | 103, 282 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NmuCI | GTSAC | 2 cut(s) | 70, 106 |
| NsiI | ATGCAT | 1 cut(s) | 318 |
| NspI | RCATGY | 1 cut(s) | 282 |
| PciI | ACATGT | 1 cut(s) | 278 |
| PciSI | GCTCTTC | 1 cut(s) | 515 |
| PdmI | GAANNNNTTC | 1 cut(s) | 194 |
| PfeI | GAWTC | 1 cut(s) | 130 |
| PkrI | GCNGC | 2 cut(s) | 657, 677 |
| PleI | GAGTC | 2 cut(s) | 249, 312 |
| PpsI | GAGTC | 2 cut(s) | 249, 312 |
| Ppu21I | YACGTR | 1 cut(s) | 516 |
| PscI | ACATGT | 1 cut(s) | 278 |
| Psp6I | CCWGG | 1 cut(s) | 379 |
| PspGI | CCWGG | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PspPI | GGNCC | 1 cut(s) | 580 |
| RsaI | GTAC | 1 cut(s) | 17 |
| RsaNI | GTAC | 1 cut(s) | 16 |
| RseI | CAYNNNNRTG | 2 cut(s) | 104, 339 |
| SapI | GCTCTTC | 1 cut(s) | 515 |
| SaqAI | TTAA | 2 cut(s) | 368, 392 |
| SatI | GCNGC | 2 cut(s) | 656, 676 |
| Sau3AI | GATC | 2 cut(s) | 34, 409 |
| Sau96I | GGNCC | 1 cut(s) | 580 |
| SchI | GAGTC | 2 cut(s) | 250, 313 |
| ScrFI | CCNGG | 1 cut(s) | 381 |
| SfaNI | GCATC | 1 cut(s) | 427 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 104, 339 |
| Sse9I | AATT | 7 cut(s) | 9, 28, 161, 204, 393, 613, 679 |
| SsiI | CCGC | 1 cut(s) | 656 |
| SspI | AATATT | 2 cut(s) | 194, 457 |
| SspMI | CTAG | 3 cut(s) | 260, 426, 552 |
| StyD4I | CCNGG | 1 cut(s) | 379 |
| TaiI | ACGT | 2 cut(s) | 58, 518 |
| TasI | AATT | 7 cut(s) | 9, 28, 161, 204, 393, 613, 679 |
| TauI | GCSGC | 1 cut(s) | 658 |
| TfiI | GAWTC | 1 cut(s) | 130 |
| Tru1I | TTAA | 2 cut(s) | 368, 392 |
| Tru9I | TTAA | 2 cut(s) | 368, 392 |
| TscAI | CASTG | 1 cut(s) | 331 |
| TseFI | GTSAC | 2 cut(s) | 70, 106 |
| TseI | GCWGC | 1 cut(s) | 675 |
| Tsp45I | GTSAC | 2 cut(s) | 70, 106 |
| TspDTI | ATGAA | 2 cut(s) | 17, 185 |
| TspRI | CASTG | 1 cut(s) | 331 |
| XapI | RAATTY | 2 cut(s) | 161, 613 |
| XbaI | TCTAGA | 2 cut(s) | 259, 425 |
| XceI | RCATGY | 1 cut(s) | 282 |
| XmiI | GTMKAC | 1 cut(s) | 473 |
| XmnI | GAANNNNTTC | 1 cut(s) | 194 |
| XspI | CTAG | 3 cut(s) | 260, 426, 552 |
| Zsp2I | ATGCAT | 1 cut(s) | 318 |