RchiOBHm_Chr4g0415501

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
40212213 .. 40213646
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38576

Sequence Viewer

Length: 825 bp
ATGAGGGATGAGAAGTGGATGCAAGCAATGACAGTCGAAATGGATGCTCTTGAGAAGAATTGTACGTGGGAGCTAGTATCATTACCACCAGGGAAGAAGACAATTGGTTGTCGGTGGGTGTATACCGTGAAACACAATTCAGATGGATCAGTGGACAGGTACAAGGCAAGACTAGTGGCTAAAGGCTATACTCAGAAGTATGGAGTGGATTATGATGAGACATTTGCACCAGTGGCGAAAATTAACACAATTCGGGTGGTGTGCAGATTGAAAAAATCTCTTTATGGTTTGAAGCAGTCTCCCAGAGCTTGGTTTGGCAAGTTCACCAAGTTCATGAAGAAAATTGGGTACCGACAGAGCAATTTAGATCACACCTTGTTCCTTAAACATCGATGTGGTAAAGTGACTGCCTTGATTATTTATGTTGATGACATGGTTGTGACAGGTGATGACTTTGAGGAGATTCAAAGGTTACAAGGTCAGCTGTCTTTAGAATTTGAGATGAAAGATTTGGGTAATTTGAAATATTTCTTGGGAATTGAAGTTGCTCGTGGGAAGGATTGTATTGTGTTGAGTCAGAGGAAGTATGTTCTTGACTTGCTGGCAGAAACAGGTATGCTTGACTATCAACCTGTTGATACTCCTATTGAGCAAAACCATAGGTTAGCAGAGTACTTGGATCAAGTACCTACGAATAAAGCAAGATACCAGAGGATAGTTGGCCGGTTGATTTATTTATCCCACAATAGACCAGATTTAGCCTATGCAGTTAGTGTGGTGAGTCAGTTTATGCATAATCCCAGTAAGACTCATATGGATGTGTAA

Protein Analysis

274

Amino Acids

31.75

Weight (kDa)

9.17

Isoelectric Point (pI)

25.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 21 - 86 6.5e-20 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 87 - 217 1.3e-31 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 309
AccI GTMKAC 1 cut(s) 122
AclWI GGATC 2 cut(s) 154, 687
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 1 cut(s) 494
AfaI GTAC 5 cut(s) 64, 161, 350, 674, 687
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 5 cut(s) 271, 292, 467, 523, 542
AhlI ACTAGT 1 cut(s) 172
AjnI CCWGG 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 3 cut(s) 73, 308, 484
AluI AGCT 3 cut(s) 73, 308, 484
Alw26I GTCTC 2 cut(s) 212, 303
AlwI GGATC 2 cut(s) 154, 687
AoxI GGCC 1 cut(s) 721
ApoI RAATTY 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 527
Asp718I GGTACC 1 cut(s) 348
AsuHPI GGTGA 3 cut(s) 316, 458, 790
BanI GGYRCC 1 cut(s) 348
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 212, 303
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 2 cut(s) 74, 173
BmcAI AGTACT 1 cut(s) 674
Bme1390I CCNGG 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 90
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 2 cut(s) 9, 34
BmuI ACTGGG 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse118I RCCGGY 1 cut(s) 723
Bse1I ACTGG 2 cut(s) 230, 801
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 4 cut(s) 13, 24, 49, 823
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 2 cut(s) 230, 801
BseRI GAGGAG 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 348
BshVI ATCGAT 1 cut(s) 391
BsiSI CCGG 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 212, 303
BsnI GGCC 1 cut(s) 723
Bsp143I GATC 3 cut(s) 146, 367, 679
BspANI GGCC 1 cut(s) 723
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 391
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 2 cut(s) 154, 687
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 723
BsrI ACTGG 2 cut(s) 230, 801
BssAI RCCGGY 1 cut(s) 723
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 3 cut(s) 146, 367, 679
BssNAI GTATAC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 549
Bst1107I GTATAC 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 34, 127
BstBAI YACGTR 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 24, 603
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 4 cut(s) 13, 24, 49, 823
BstKTI GATC 3 cut(s) 149, 370, 682
BstMAI GTCTC 2 cut(s) 212, 303
BstMBI GATC 3 cut(s) 146, 367, 679
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 391
BsuRI GGCC 1 cut(s) 723
BsuTUI ATCGAT 1 cut(s) 391
BtsCI GGATG 4 cut(s) 13, 24, 49, 823
BtsIMutI CAGTG 2 cut(s) 156, 237
Cac8I GCNNGC 2 cut(s) 24, 603
CciI TCATGA 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 723
ClaI ATCGAT 1 cut(s) 391
Csp6I GTAC 5 cut(s) 63, 160, 349, 673, 686
CspCI CAANNNNNGTGG 4 cut(s) 156, 191, 237, 272
CviAII CATG 2 cut(s) 334, 433
CviJI RGCY 7 cut(s) 73, 179, 186, 308, 484, 723, 761
CviKI_1 RGCY 7 cut(s) 73, 179, 186, 308, 484, 723, 761
CviQI GTAC 5 cut(s) 63, 160, 349, 673, 686
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 148, 369, 681
DpnII GATC 3 cut(s) 146, 367, 679
EaeI YGGCCR 1 cut(s) 721
EcoRII CCWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 795
FaeI CATG 2 cut(s) 337, 436
FatI CATG 2 cut(s) 333, 432
FauNDI CATATG 1 cut(s) 813
FblI GTMKAC 1 cut(s) 122
FokI GGATG 3 cut(s) 20, 31, 56
FspBI CTAG 2 cut(s) 74, 173
HaeIII GGCC 1 cut(s) 723
HapII CCGG 1 cut(s) 724
Hin1II CATG 2 cut(s) 337, 436
HinfI GANTC 4 cut(s) 463, 574, 781, 808
HpaII CCGG 1 cut(s) 724
HphI GGTGA 3 cut(s) 316, 458, 790
Hpy166II GTNNAC 3 cut(s) 123, 154, 324
Hpy188I TCNGA 3 cut(s) 142, 195, 579
Hpy188III TCNNGA 3 cut(s) 50, 334, 593
Hpy8I GTNNAC 3 cut(s) 123, 154, 324
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 2 cut(s) 34, 127
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 5 cut(s) 22, 227, 264, 767, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 2 cut(s) 337, 436
KpnI GGTACC 1 cut(s) 352
Kzo9I GATC 3 cut(s) 146, 367, 679
LmnI GCTCC 1 cut(s) 70
LweI GCATC 2 cut(s) 9, 34
MaeI CTAG 2 cut(s) 74, 173
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 403, 439, 471
MalI GATC 3 cut(s) 148, 369, 681
MboI GATC 3 cut(s) 146, 367, 679
MboII GAAGA 4 cut(s) 67, 106, 109, 349
MfeI CAATTG 1 cut(s) 102
MlyI GAGTC 3 cut(s) 583, 790, 802
MnlI CCTC 3 cut(s) 451, 573, 705
Mph1103I ATGCAT 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 2 cut(s) 243, 384
MslI CAYNNNNRTG 3 cut(s) 393, 437, 816
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 1 cut(s) 724
MspR9I CCNGG 1 cut(s) 90
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeI CATATG 1 cut(s) 813
NdeII GATC 3 cut(s) 146, 367, 679
NlaIII CATG 2 cut(s) 337, 436
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 403, 439
NsiI ATGCAT 1 cut(s) 795
PagI TCATGA 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 463
PflMI CCANNNNNTGG 1 cut(s) 309
PleI GAGTC 3 cut(s) 582, 789, 802
PpsI GAGTC 3 cut(s) 582, 789, 802
Ppu21I YACGTR 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 484
RsaI GTAC 5 cut(s) 64, 161, 350, 674, 687
RsaNI GTAC 5 cut(s) 63, 160, 349, 673, 686
RseI CAYNNNNRTG 3 cut(s) 393, 437, 816
SaqAI TTAA 2 cut(s) 243, 384
Sau3AI GATC 3 cut(s) 146, 367, 679
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 3 cut(s) 583, 790, 802
ScrFI CCNGG 1 cut(s) 90
SfaNI GCATC 2 cut(s) 9, 34
SmiMI CAYNNNNRTG 3 cut(s) 393, 437, 816
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 172
SspI AATATT 1 cut(s) 527
SspMI CTAG 2 cut(s) 74, 173
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 34, 127
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 36, 391
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 2 cut(s) 243, 384
Tru9I TTAA 2 cut(s) 243, 384
TscAI CASTG 2 cut(s) 156, 237
TseFI GTSAC 2 cut(s) 403, 439
Tsp45I GTSAC 2 cut(s) 403, 439
TspDTI ATGAA 3 cut(s) 322, 350, 518
TspRI CASTG 2 cut(s) 156, 237
Van91I CCANNNNNTGG 1 cut(s) 309
XapI RAATTY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 2 cut(s) 74, 173
ZrmI AGTACT 1 cut(s) 674
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.