RchiOBHm_Chr1g0349861

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000071
Physical Location & Seq
Reverse (-)
42958812 .. 42961623
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57579

Sequence Viewer

Length: 1494 bp
ATGGGCCAGCAATTACTTTATCTGAGGCCCAATTTAACAATTTTTAGCTGCAGTCCAACAAGCCCAAAAGCCCAATCCAAATACCGGCTCGAGTTCCAAAGCAAATGCAGTAACGCAGCCAGGCCAACAGTACTTGGACCCTCACCACGCTGCCCCCTGGGAAGTCCCCAATTGGTTGTCGGTGGGTTTATAAAGTCAAGCACAGGTCTAATGGTTCCATTGAACGATACAAGGCCCGGTTGGTGGCCAAGGGCTTCACTTAGTTGGCAGGTATTGACTATCAGGACACTTTTTCTCCTACTGCTAAAATGGTTACAGTCCGTTGTCCACTTGCATTGGCTGCGTCCCATGGCTGGTCTCTTTCTCAGCTCTGTCAACAATGCCTTCCTCCATGGCAATCTGGATGAAGAGATTTACATGTCTCCACCGCTAGGGCTCCAAAGACAGGGGGAAGAGCATTTGGTTTATCGGTTGCATAAATCCTTGTATGGTCTAAAACAAGCTTCAAGGCAGTGGTTTTCTAGATTTTCAGAAGTTATTCGATCTGCTGGTTTTGTGCAATCTAGAGCGGACTACTCTCTTTTTACCAGAGGACAAGGCAAGTCTTTTACAGTCTTATTGATATATGTTGATGACATATTAATTACTGGCAATGATCCTGTGAGTATAGCTGATGTCAAGAATTTTTTGCATAAAACATTTCGTTTGAAAGATCTTGGCTGCGTAAAGTATTTTCTTGGCATTGAGGTTTCTACATCCAAGAGAGGAATTTTTATTTGTCAGTGCAAGTATGTGTTAGAAATTATAAAAGATGCAGGATTATTGGGCACTGCCCCTGTTGATACACCCATGGAACATGGTTTAAAGTTGTCAGATAAGACTGAGTTACTCAAAGATCCAGAGAAGTACAGGCATTTGGTTGGAAGATTGATCTATCTCACAATGTCAAGGCCAGATATTACATATCCTGTTCATATATTAAGCAGGTTTATGCATCAGCCTCGAAAAGCCGATTGGGAGACAGCCTTGCGAGTGGTACGCTACCTCAAGTCAGCTCCTGGTCAAGGCTTATTCTTTTCCTCAAATAGTGATCTTCGGCTACGAGCTTTTTGTGACTCAGATTGGGCCGGGTGTCCACTTACAAGAAGGTCTACTACAGGGTATTGTGTGTTCTTAGGACCTTCTTTAATCTCATGGAGGTCGAAACGTCAGAAAACAATCTCTCTTTCTTCAGCTGAAGCTGAGTATTTTGCTATGACAGGAGCTTGTTGTGAGTTGACTTGGCTACGTTATTTACTTCAAGACTTGGGGATTTTACACCAGGAAACTGCGTTGCTTTATTGTGACAGCAAGGCTGCTTTACATATAGCAGCAAATCCAGTGTTTCATGAACGTACAACACATATAGAGATGGATTGTCACTATATCAGGGATAAGATCCAAGATGGTTCAGTGGAGACACGGTTTATCAATACAACAATTATCACTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

497

Amino Acids

56.41

Weight (kDa)

9.35

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 125 - 285 2.7e-44 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 191, 806
Acc36I ACCTGC 2 cut(s) 259, 975
AccBSI CCGCTC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 1151
AciI CCGC 2 cut(s) 428, 569
AclWI GGATC 3 cut(s) 650, 890, 1432
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 2 cut(s) 682, 768
AcuI CTGAAG 2 cut(s) 1215, 1257
AfaI GTAC 4 cut(s) 132, 908, 1038, 1396
AfiI CCNNNNNNNGG 6 cut(s) 84, 243, 353, 431, 445, 1064
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 4 cut(s) 223, 507, 709, 1301
AjnI CCWGG 4 cut(s) 119, 156, 1057, 1320
AjuI GAANNNNNNNTTGG 2 cut(s) 997, 1029
AluBI AGCT 9 cut(s) 48, 369, 503, 671, 1055, 1106, 1235, 1241, 1265
AluI AGCT 9 cut(s) 48, 369, 503, 671, 1055, 1106, 1235, 1241, 1265
Alw26I GTCTC 4 cut(s) 362, 426, 1013, 1451
AlwI GGATC 3 cut(s) 650, 890, 1432
AlwNI CAGNNNCTG 1 cut(s) 1058
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 7 cut(s) 4, 26, 122, 233, 245, 950, 1125
ApeKI GCWGC 7 cut(s) 48, 116, 150, 340, 720, 1355, 1370
ApoI RAATTY 2 cut(s) 682, 768
AseI ATTAAT 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 537
AspS9I GGNCC 6 cut(s) 4, 27, 137, 234, 1125, 1178
AsuC2I CCSGG 2 cut(s) 237, 1129
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 2 cut(s) 137, 1178
BaeGI GKGCMC 1 cut(s) 830
BalI TGGCCA 1 cut(s) 247
BanII GRGCYC 1 cut(s) 438
BarI GAAGNNNNNNTAC 2 cut(s) 1138, 1170
BbvI GCAGC 7 cut(s) 35, 128, 137, 327, 707, 1342, 1382
BccI CCATC 2 cut(s) 1405, 1439
BcgI CGANNNNNNTGC 2 cut(s) 983, 1017
BciT130I CCWGG 4 cut(s) 121, 158, 1059, 1322
BcnI CCSGG 2 cut(s) 237, 1129
BcoDI GTCTC 4 cut(s) 362, 426, 1013, 1451
BfaI CTAG 3 cut(s) 431, 522, 564
BfmI CTRYAG 2 cut(s) 49, 1155
BfuAI ACCTGC 2 cut(s) 259, 975
BglII AGATCT 1 cut(s) 712
BisI GCNGC 7 cut(s) 49, 117, 151, 341, 721, 1356, 1371
BlsI GCNGC 7 cut(s) 50, 118, 152, 342, 722, 1357, 1372
BmcAI AGTACT 1 cut(s) 132
Bme1390I CCNGG 6 cut(s) 121, 158, 237, 1059, 1129, 1322
Bme18I GGWCC 2 cut(s) 137, 1178
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 6 cut(s) 4, 27, 137, 234, 1125, 1178
BmiI GGNNCC 3 cut(s) 139, 216, 437
BmrFI CCNGG 6 cut(s) 121, 158, 237, 1059, 1129, 1322
BmsI GCATC 2 cut(s) 802, 1003
BpuEI CTTGAG 1 cut(s) 1031
BpuMI CCSGG 2 cut(s) 237, 1129
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 6 cut(s) 156, 157, 248, 348, 391, 849
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 1448, 1478
Bsc4I CCNNNNNNNGG 6 cut(s) 84, 243, 353, 431, 445, 1064
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 652, 1379
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 4 cut(s) 121, 158, 1059, 1322
BseDI CCNNGG 6 cut(s) 156, 157, 248, 348, 391, 849
BseGI GGATG 2 cut(s) 409, 755
BseLI CCNNNNNNNGG 6 cut(s) 84, 243, 353, 431, 445, 1064
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 5 cut(s) 14, 379, 873, 1131, 1233
BseNI ACTGG 2 cut(s) 652, 1379
BseSI GKGCMC 1 cut(s) 830
BseXI GCAGC 7 cut(s) 35, 128, 137, 327, 707, 1342, 1382
BshFI GGCC 7 cut(s) 6, 28, 124, 235, 247, 952, 1127
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 3 cut(s) 85, 237, 1128
BslFI GGGAC 2 cut(s) 150, 330
BslI CCNNNNNNNGG 6 cut(s) 84, 243, 353, 431, 445, 1064
BsmAI GTCTC 4 cut(s) 362, 426, 1013, 1451
BsmFI GGGAC 2 cut(s) 150, 330
BsnI GGCC 7 cut(s) 6, 28, 124, 235, 247, 952, 1127
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 438, 830
Bsp143I GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
Bsp19I CCATGG 3 cut(s) 348, 391, 849
BspACI CCGC 2 cut(s) 428, 569
BspANI GGCC 7 cut(s) 6, 28, 124, 235, 247, 952, 1127
BspCNI CTCAG 5 cut(s) 15, 378, 874, 1130, 1234
BspHI TCATGA 1 cut(s) 1387
BspLI GGNNCC 3 cut(s) 139, 216, 437
BspMAI CTGCAG 1 cut(s) 53
BspMI ACCTGC 2 cut(s) 259, 975
BspPI GGATC 3 cut(s) 650, 890, 1432
BspQI GCTCTTC 1 cut(s) 447
BspTNI GGTCTC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 2 cut(s) 652, 1379
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 6 cut(s) 156, 157, 248, 348, 391, 849
BssMI GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
BssT1I CCWWGG 4 cut(s) 248, 348, 391, 849
Bst2UI CCWGG 4 cut(s) 121, 158, 1059, 1322
Bst4CI ACNGT 4 cut(s) 130, 318, 613, 1464
Bst6I CTCTTC 2 cut(s) 402, 447
BstAPI GCANNNNNTGC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 7 cut(s) 23, 260, 365, 882, 1117, 1174, 1242
BstDSI CCRYGG 3 cut(s) 348, 391, 849
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 2 cut(s) 409, 755
BstKTI GATC 7 cut(s) 545, 658, 715, 898, 933, 1093, 1440
BstMAI GTCTC 4 cut(s) 362, 426, 1013, 1451
BstMBI GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNI CCWGG 4 cut(s) 121, 158, 1059, 1322
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 6 cut(s) 119, 156, 235, 1057, 1127, 1320
BstSFI CTRYAG 2 cut(s) 49, 1155
BstSLI GKGCMC 1 cut(s) 830
BstV1I GCAGC 7 cut(s) 35, 128, 137, 327, 707, 1342, 1382
BstX2I RGATCY 3 cut(s) 712, 895, 1437
BstYI RGATCY 3 cut(s) 712, 895, 1437
BsuRI GGCC 7 cut(s) 6, 28, 124, 235, 247, 952, 1127
BtgI CCRYGG 3 cut(s) 348, 391, 849
BtsCI GGATG 2 cut(s) 409, 755
BtsI GCAGTG 2 cut(s) 518, 828
BtsIMutI CAGTG 5 cut(s) 518, 788, 828, 1386, 1458
BveI ACCTGC 2 cut(s) 259, 975
Cac8I GCNNGC 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 1058
CciI TCATGA 1 cut(s) 1387
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 6 cut(s) 4, 27, 137, 234, 1125, 1178
CseI GACGC 1 cut(s) 332
Csp6I GTAC 4 cut(s) 131, 907, 1037, 1395
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
CviAII CATG 7 cut(s) 349, 392, 418, 850, 857, 1194, 1388
CviQI GTAC 4 cut(s) 131, 907, 1037, 1395
DdeI CTNAG 7 cut(s) 23, 260, 365, 882, 1117, 1174, 1242
DpnI GATC 7 cut(s) 544, 657, 714, 897, 932, 1092, 1439
DpnII GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
DraI TTTAAA 1 cut(s) 864
EaeI YGGCCR 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 402, 447
EarI CTCTTC 2 cut(s) 402, 447
Eco130I CCWWGG 4 cut(s) 248, 348, 391, 849
Eco24I GRGCYC 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 137, 1178
Eco57I CTGAAG 2 cut(s) 1215, 1257
Eco88I CYCGRG 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRII CCWGG 4 cut(s) 119, 156, 1057, 1320
EcoT14I CCWWGG 4 cut(s) 248, 348, 391, 849
EcoT22I ATGCAT 1 cut(s) 996
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 4 cut(s) 248, 348, 391, 849
FaeI CATG 7 cut(s) 352, 395, 421, 853, 860, 1197, 1391
FaqI GGGAC 2 cut(s) 150, 330
FatI CATG 7 cut(s) 348, 391, 417, 849, 856, 1193, 1387
FblI GTMKAC 1 cut(s) 1151
Fnu4HI GCNGC 7 cut(s) 49, 117, 151, 341, 721, 1356, 1371
FokI GGATG 2 cut(s) 416, 742
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 7 cut(s) 49, 117, 151, 341, 721, 1356, 1371
FspBI CTAG 3 cut(s) 431, 522, 564
GluI GCNGC 7 cut(s) 49, 117, 151, 341, 721, 1356, 1371
HaeIII GGCC 7 cut(s) 6, 28, 124, 235, 247, 952, 1127
HapII CCGG 3 cut(s) 85, 237, 1128
HgaI GACGC 1 cut(s) 332
Hin1II CATG 7 cut(s) 352, 395, 421, 853, 860, 1197, 1391
HincII GTYRAC 2 cut(s) 376, 1278
HindII GTYRAC 2 cut(s) 376, 1278
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 1 cut(s) 1115
HpaII CCGG 3 cut(s) 85, 237, 1128
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 5 cut(s) 328, 376, 1136, 1152, 1278
Hpy188I TCNGA 5 cut(s) 24, 532, 874, 1120, 1212
Hpy188III TCNNGA 9 cut(s) 283, 401, 522, 564, 679, 899, 1301, 1388, 1491
Hpy8I GTNNAC 5 cut(s) 328, 376, 1136, 1152, 1278
HpyAV CCTTC 3 cut(s) 394, 1140, 1191
HpyCH4III ACNGT 4 cut(s) 130, 318, 613, 1464
HpyCH4IV ACGT 3 cut(s) 1207, 1288, 1393
HpyCH4V TGCA 9 cut(s) 51, 108, 334, 475, 559, 691, 786, 815, 994
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 7 cut(s) 23, 260, 365, 882, 1117, 1174, 1242
HpySE526I ACGT 3 cut(s) 1207, 1288, 1393
Hsp92II CATG 7 cut(s) 352, 395, 421, 853, 860, 1197, 1391
Kzo9I GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 3 cut(s) 441, 1060, 1262
Lsp1109I GCAGC 7 cut(s) 35, 128, 137, 327, 707, 1342, 1382
LweI GCATC 2 cut(s) 802, 1003
MaeI CTAG 3 cut(s) 431, 522, 564
MaeII ACGT 3 cut(s) 1207, 1288, 1393
MaeIII GTNAC 6 cut(s) 110, 312, 885, 1112, 1343, 1418
MalI GATC 7 cut(s) 544, 657, 714, 897, 932, 1092, 1439
MbiI CCGCTC 1 cut(s) 569
MboI GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
MboII GAAGA 5 cut(s) 419, 464, 936, 1085, 1221
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 3 cut(s) 712, 895, 1437
MhlI GDGCHC 2 cut(s) 438, 830
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 9 cut(s) 11, 31, 39, 170, 642, 682, 768, 801, 1479
MluNI TGGCCA 1 cut(s) 247
MlyI GAGTC 1 cut(s) 1109
MmeI TCCRAC 2 cut(s) 80, 901
Mox20I TGGCCA 1 cut(s) 247
Mph1103I ATGCAT 1 cut(s) 996
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 247
MseI TTAA 5 cut(s) 35, 641, 863, 980, 1187
Msp20I TGGCCA 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 1235
MspI CCGG 3 cut(s) 85, 237, 1128
MspR9I CCNGG 6 cut(s) 121, 158, 237, 1059, 1129, 1322
MunI CAATTG 1 cut(s) 170
MvaI CCWGG 4 cut(s) 121, 158, 1059, 1322
MwoI GCNNNNNNNGC 1 cut(s) 340
NciI CCSGG 2 cut(s) 237, 1129
NcoI CCATGG 3 cut(s) 348, 391, 849
NdeII GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
NlaIII CATG 7 cut(s) 352, 395, 421, 853, 860, 1197, 1391
NlaIV GGNNCC 3 cut(s) 139, 216, 437
NmuCI GTSAC 3 cut(s) 1112, 1343, 1418
NsiI ATGCAT 1 cut(s) 996
NspI RCATGY 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 89
PagI TCATGA 1 cut(s) 1387
PasI CCCWGGG 1 cut(s) 157
PciI ACATGT 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 537
PkrI GCNGC 7 cut(s) 50, 118, 152, 342, 722, 1357, 1372
PleI GAGTC 1 cut(s) 1109
PpsI GAGTC 1 cut(s) 1109
PpuMI RGGWCCY 1 cut(s) 1178
PscI ACATGT 1 cut(s) 417
PshBI ATTAAT 1 cut(s) 641
PsiI TTATAA 2 cut(s) 191, 806
Psp5II RGGWCCY 1 cut(s) 1178
Psp6I CCWGG 4 cut(s) 119, 156, 1057, 1320
PspGI CCWGG 4 cut(s) 119, 156, 1057, 1320
PspN4I GGNNCC 3 cut(s) 139, 216, 437
PspPI GGNCC 6 cut(s) 4, 27, 137, 234, 1125, 1178
PspPPI RGGWCCY 1 cut(s) 1178
PspXI VCTCGAGB 1 cut(s) 89
PsrI GAACNNNNNNTAC 2 cut(s) 1154, 1186
PstI CTGCAG 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 1058
PsuI RGATCY 3 cut(s) 712, 895, 1437
PvuII CAGCTG 1 cut(s) 1235
RsaI GTAC 4 cut(s) 132, 908, 1038, 1396
RsaNI GTAC 4 cut(s) 131, 907, 1037, 1395
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 5 cut(s) 35, 641, 863, 980, 1187
SatI GCNGC 7 cut(s) 49, 117, 151, 341, 721, 1356, 1371
Sau3AI GATC 7 cut(s) 542, 655, 712, 895, 930, 1090, 1437
Sau96I GGNCC 6 cut(s) 4, 27, 137, 234, 1125, 1178
ScaI AGTACT 1 cut(s) 132
SchI GAGTC 1 cut(s) 1109
ScrFI CCNGG 6 cut(s) 121, 158, 237, 1059, 1129, 1322
SduI GDGCHC 2 cut(s) 438, 830
SfaNI GCATC 2 cut(s) 802, 1003
SfcI CTRYAG 2 cut(s) 49, 1155
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 2 cut(s) 137, 1178
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 89, 1046
SmoI CTYRAG 2 cut(s) 89, 1046
Sse9I AATT 9 cut(s) 11, 31, 39, 170, 642, 682, 768, 801, 1479
SsiI CCGC 2 cut(s) 428, 569
SspMI CTAG 3 cut(s) 431, 522, 564
StyD4I CCNGG 6 cut(s) 119, 156, 235, 1057, 1127, 1320
StyI CCWWGG 4 cut(s) 248, 348, 391, 849
TaaI ACNGT 4 cut(s) 130, 318, 613, 1464
TaiI ACGT 3 cut(s) 1210, 1291, 1396
TaqI TCGA 4 cut(s) 90, 541, 1003, 1202
TasI AATT 9 cut(s) 11, 31, 39, 170, 642, 682, 768, 801, 1479
TatI WGTACW 2 cut(s) 130, 906
Tru1I TTAA 5 cut(s) 35, 641, 863, 980, 1187
Tru9I TTAA 5 cut(s) 35, 641, 863, 980, 1187
TscAI CASTG 5 cut(s) 518, 788, 835, 1386, 1458
TseFI GTSAC 3 cut(s) 1112, 1343, 1418
TseI GCWGC 7 cut(s) 48, 116, 150, 340, 720, 1355, 1370
Tsp45I GTSAC 3 cut(s) 1112, 1343, 1418
TspDTI ATGAA 4 cut(s) 420, 962, 1376, 1404
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 5 cut(s) 518, 788, 835, 1386, 1458
VpaK11BI GGWCC 2 cut(s) 137, 1178
VspI ATTAAT 1 cut(s) 641
XagI CCTNNNNNAGG 1 cut(s) 1062
XapI RAATTY 2 cut(s) 682, 768
XbaI TCTAGA 2 cut(s) 521, 563
XceI RCATGY 1 cut(s) 421
XhoI CTCGAG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 1151
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 3 cut(s) 431, 522, 564
ZrmI AGTACT 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.