Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 11 - 72 | 5.1e-17 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 71 - 131 | 1.6e-11 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 135 - 189 | 5.8e-06 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 119 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 977 |
| AccI | GTMKAC | 2 cut(s) | 93, 869 |
| AccII | CGCG | 3 cut(s) | 142, 847, 943 |
| AciI | CCGC | 3 cut(s) | 142, 836, 953 |
| AclI | AACGTT | 1 cut(s) | 194 |
| AcoI | YGGCCR | 2 cut(s) | 668, 979 |
| AcsI | RAATTY | 2 cut(s) | 272, 786 |
| AcyI | GRCGYC | 1 cut(s) | 643 |
| AfaI | GTAC | 4 cut(s) | 269, 446, 683, 969 |
| AfeI | AGCGCT | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 457, 781, 782, 803, 977 |
| AgsI | TTSAA | 7 cut(s) | 17, 128, 307, 334, 418, 524, 948 |
| AjnI | CCWGG | 1 cut(s) | 244 |
| AleI | CACNNNNGTG | 1 cut(s) | 224 |
| Ama87I | CYCGRG | 1 cut(s) | 775 |
| Aor51HI | AGCGCT | 1 cut(s) | 21 |
| AoxI | GGCC | 2 cut(s) | 668, 979 |
| ApeKI | GCWGC | 1 cut(s) | 740 |
| ApoI | RAATTY | 2 cut(s) | 272, 786 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 763, 795 |
| AspLEI | GCGC | 3 cut(s) | 22, 142, 847 |
| AsuC2I | CCSGG | 3 cut(s) | 203, 776, 777 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 208 |
| AsuII | TTCGAA | 1 cut(s) | 252 |
| AvaI | CYCGRG | 1 cut(s) | 775 |
| BalI | TGGCCA | 1 cut(s) | 981 |
| BanI | GGYRCC | 1 cut(s) | 119 |
| BbsI | GAAGAC | 2 cut(s) | 531, 923 |
| BbvCI | CCTCAGC | 1 cut(s) | 343 |
| BbvI | GCAGC | 1 cut(s) | 752 |
| BccI | CCATC | 3 cut(s) | 67, 110, 559 |
| BceAI | ACGGC | 1 cut(s) | 683 |
| BciT130I | CCWGG | 1 cut(s) | 246 |
| BclI | TGATCA | 1 cut(s) | 568 |
| BcnI | CCSGG | 3 cut(s) | 203, 776, 777 |
| BfaI | CTAG | 2 cut(s) | 47, 318 |
| BfoI | RGCGCY | 1 cut(s) | 23 |
| BglII | AGATCT | 1 cut(s) | 673 |
| BisI | GCNGC | 1 cut(s) | 741 |
| BlsI | GCNGC | 1 cut(s) | 742 |
| Bme1390I | CCNGG | 4 cut(s) | 203, 246, 776, 777 |
| BmeT110I | CYCGRG | 1 cut(s) | 775 |
| BmiI | GGNNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 4 cut(s) | 203, 246, 776, 777 |
| BmsI | GCATC | 5 cut(s) | 604, 626, 669, 823, 889 |
| BpiI | GAAGAC | 2 cut(s) | 531, 923 |
| BpmI | CTGGAG | 2 cut(s) | 335, 533 |
| Bpu10I | CCTNAGC | 1 cut(s) | 343 |
| Bpu14I | TTCGAA | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 2 cut(s) | 29, 749 |
| BpuMI | CCSGG | 3 cut(s) | 203, 776, 777 |
| BsaAI | YACGTR | 1 cut(s) | 39 |
| BsaHI | GRCGYC | 1 cut(s) | 643 |
| BsaJI | CCNNGG | 4 cut(s) | 201, 451, 774, 775 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 457, 781, 782, 803, 977 |
| Bse1I | ACTGG | 3 cut(s) | 352, 516, 971 |
| BseBI | CCWGG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 4 cut(s) | 201, 451, 774, 775 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 457, 781, 782, 803, 977 |
| BseMII | CTCAG | 4 cut(s) | 357, 635, 670, 712 |
| BseNI | ACTGG | 3 cut(s) | 352, 516, 971 |
| BseRI | GAGGAG | 1 cut(s) | 331 |
| BseXI | GCAGC | 1 cut(s) | 752 |
| Bsh1236I | CGCG | 3 cut(s) | 142, 847, 943 |
| Bsh1285I | CGRYCG | 1 cut(s) | 964 |
| BshFI | GGCC | 2 cut(s) | 670, 981 |
| BshNI | GGYRCC | 1 cut(s) | 119 |
| BsiEI | CGRYCG | 1 cut(s) | 964 |
| BsiHKCI | CYCGRG | 1 cut(s) | 775 |
| BsiSI | CCGG | 2 cut(s) | 203, 776 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 457, 781, 782, 803, 977 |
| BsnI | GGCC | 2 cut(s) | 670, 981 |
| BsoBI | CYCGRG | 1 cut(s) | 775 |
| Bsp119I | TTCGAA | 1 cut(s) | 252 |
| Bsp143I | GATC | 4 cut(s) | 99, 568, 673, 961 |
| BspACI | CCGC | 3 cut(s) | 142, 836, 953 |
| BspANI | GGCC | 2 cut(s) | 670, 981 |
| BspCNI | CTCAG | 4 cut(s) | 356, 634, 669, 711 |
| BspFNI | CGCG | 3 cut(s) | 142, 847, 943 |
| BspLI | GGNNCC | 1 cut(s) | 121 |
| BspT104I | TTCGAA | 1 cut(s) | 252 |
| BspT107I | GGYRCC | 1 cut(s) | 119 |
| BsrI | ACTGG | 3 cut(s) | 352, 516, 971 |
| BssECI | CCNNGG | 4 cut(s) | 201, 451, 774, 775 |
| BssMI | GATC | 4 cut(s) | 99, 568, 673, 961 |
| BssNAI | GTATAC | 1 cut(s) | 94 |
| BssNI | GRCGYC | 1 cut(s) | 643 |
| Bst1107I | GTATAC | 1 cut(s) | 94 |
| Bst2UI | CCWGG | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 1 cut(s) | 937 |
| BstACI | GRCGYC | 1 cut(s) | 643 |
| BstBAI | YACGTR | 1 cut(s) | 39 |
| BstBI | TTCGAA | 1 cut(s) | 252 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 4 cut(s) | 343, 621, 656, 698 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 801 |
| BstFNI | CGCG | 3 cut(s) | 142, 847, 943 |
| BstH2I | RGCGCY | 1 cut(s) | 23 |
| BstHHI | GCGC | 3 cut(s) | 22, 142, 847 |
| BstKTI | GATC | 4 cut(s) | 102, 571, 676, 964 |
| BstMBI | GATC | 4 cut(s) | 99, 568, 673, 961 |
| BstMCI | CGRYCG | 1 cut(s) | 964 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 26, 206, 540, 842 |
| BstNI | CCWGG | 1 cut(s) | 246 |
| BstSCI | CCNGG | 4 cut(s) | 201, 244, 774, 775 |
| BstUI | CGCG | 3 cut(s) | 142, 847, 943 |
| BstV1I | GCAGC | 1 cut(s) | 752 |
| BstV2I | GAAGAC | 2 cut(s) | 531, 923 |
| BstX2I | RGATCY | 1 cut(s) | 673 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 359 |
| BstYI | RGATCY | 1 cut(s) | 673 |
| BstZ17I | GTATAC | 1 cut(s) | 94 |
| BsuRI | GGCC | 2 cut(s) | 670, 981 |
| BtgZI | GCGATG | 1 cut(s) | 846 |
| BtsIMutI | CAGTG | 1 cut(s) | 509 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| CfoI | GCGC | 3 cut(s) | 22, 142, 847 |
| Cfr9I | CCCGGG | 1 cut(s) | 775 |
| CseI | GACGC | 2 cut(s) | 651, 746 |
| Csp6I | GTAC | 4 cut(s) | 268, 445, 682, 968 |
| CviAII | CATG | 1 cut(s) | 709 |
| CviQI | GTAC | 4 cut(s) | 268, 445, 682, 968 |
| DdeI | CTNAG | 4 cut(s) | 343, 621, 656, 698 |
| DpnI | GATC | 4 cut(s) | 101, 570, 675, 963 |
| DpnII | GATC | 4 cut(s) | 99, 568, 673, 961 |
| EaeI | YGGCCR | 2 cut(s) | 668, 979 |
| Eco32I | GATATC | 1 cut(s) | 761 |
| Eco47III | AGCGCT | 1 cut(s) | 21 |
| Eco88I | CYCGRG | 1 cut(s) | 775 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 801 |
| EcoRII | CCWGG | 1 cut(s) | 244 |
| EcoRV | GATATC | 1 cut(s) | 761 |
| EcoT22I | ATGCAT | 1 cut(s) | 619 |
| FaeI | CATG | 1 cut(s) | 712 |
| FatI | CATG | 1 cut(s) | 708 |
| FbaI | TGATCA | 1 cut(s) | 568 |
| FblI | GTMKAC | 2 cut(s) | 93, 869 |
| Fnu4HI | GCNGC | 1 cut(s) | 741 |
| Fsp4HI | GCNGC | 1 cut(s) | 741 |
| FspBI | CTAG | 2 cut(s) | 47, 318 |
| GlaI | GCGC | 3 cut(s) | 21, 141, 846 |
| GluI | GCNGC | 1 cut(s) | 741 |
| GsuI | CTGGAG | 2 cut(s) | 335, 533 |
| HaeII | RGCGCY | 1 cut(s) | 23 |
| HaeIII | GGCC | 2 cut(s) | 670, 981 |
| HapII | CCGG | 2 cut(s) | 203, 776 |
| HgaI | GACGC | 2 cut(s) | 651, 746 |
| HhaI | GCGC | 3 cut(s) | 22, 142, 847 |
| Hin1I | GRCGYC | 1 cut(s) | 643 |
| Hin1II | CATG | 1 cut(s) | 712 |
| Hin6I | GCGC | 3 cut(s) | 20, 140, 845 |
| HinP1I | GCGC | 3 cut(s) | 20, 140, 845 |
| HincII | GTYRAC | 1 cut(s) | 870 |
| HindII | GTYRAC | 1 cut(s) | 870 |
| HinfI | GANTC | 2 cut(s) | 13, 43 |
| HpaII | CCGG | 2 cut(s) | 203, 776 |
| HphI | GGTGA | 2 cut(s) | 101, 208 |
| Hpy166II | GTNNAC | 2 cut(s) | 94, 870 |
| Hpy188I | TCNGA | 4 cut(s) | 382, 455, 564, 573 |
| Hpy188III | TCNNGA | 4 cut(s) | 179, 188, 318, 586 |
| Hpy8I | GTNNAC | 2 cut(s) | 94, 870 |
| HpyAV | CCTTC | 4 cut(s) | 167, 583, 590, 807 |
| HpyCH4III | ACNGT | 1 cut(s) | 937 |
| HpyCH4IV | ACGT | 3 cut(s) | 38, 194, 443 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 235, 509, 617, 852, 885 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 26, 206, 540, 842 |
| HpyF3I | CTNAG | 4 cut(s) | 343, 621, 656, 698 |
| HpySE526I | ACGT | 3 cut(s) | 38, 194, 443 |
| Hsp92I | GRCGYC | 1 cut(s) | 643 |
| Hsp92II | CATG | 1 cut(s) | 712 |
| HspAI | GCGC | 3 cut(s) | 20, 140, 845 |
| Ksp22I | TGATCA | 1 cut(s) | 568 |
| Kzo9I | GATC | 4 cut(s) | 99, 568, 673, 961 |
| LmnI | GCTCC | 1 cut(s) | 907 |
| Lsp1109I | GCAGC | 1 cut(s) | 752 |
| LweI | GCATC | 5 cut(s) | 604, 626, 669, 823, 889 |
| MaeI | CTAG | 2 cut(s) | 47, 318 |
| MaeII | ACGT | 3 cut(s) | 38, 194, 443 |
| MaeIII | GTNAC | 1 cut(s) | 282 |
| MalI | GATC | 4 cut(s) | 101, 570, 675, 963 |
| MboI | GATC | 4 cut(s) | 99, 568, 673, 961 |
| MboII | GAAGA | 3 cut(s) | 536, 623, 928 |
| MflI | RGATCY | 1 cut(s) | 673 |
| MlsI | TGGCCA | 1 cut(s) | 981 |
| MluCI | AATT | 5 cut(s) | 272, 419, 704, 786, 815 |
| MluNI | TGGCCA | 1 cut(s) | 981 |
| MlyI | GAGTC | 1 cut(s) | 52 |
| MmeI | TCCRAC | 1 cut(s) | 619 |
| Mox20I | TGGCCA | 1 cut(s) | 981 |
| Mph1103I | ATGCAT | 1 cut(s) | 619 |
| MscI | TGGCCA | 1 cut(s) | 981 |
| MseI | TTAA | 3 cut(s) | 422, 491, 818 |
| MslI | CAYNNNNRTG | 2 cut(s) | 114, 224 |
| Msp20I | TGGCCA | 1 cut(s) | 981 |
| MspI | CCGG | 2 cut(s) | 203, 776 |
| MspR9I | CCNGG | 4 cut(s) | 203, 246, 776, 777 |
| MvaI | CCWGG | 1 cut(s) | 246 |
| MvnI | CGCG | 3 cut(s) | 142, 847, 943 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 26, 206, 540, 842 |
| NciI | CCSGG | 3 cut(s) | 203, 776, 777 |
| NdeII | GATC | 4 cut(s) | 99, 568, 673, 961 |
| NlaIII | CATG | 1 cut(s) | 712 |
| NlaIV | GGNNCC | 1 cut(s) | 121 |
| NsiI | ATGCAT | 1 cut(s) | 619 |
| NspV | TTCGAA | 1 cut(s) | 252 |
| OliI | CACNNNNGTG | 1 cut(s) | 224 |
| PfeI | GAWTC | 1 cut(s) | 13 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 977 |
| PkrI | GCNGC | 1 cut(s) | 742 |
| Ple19I | CGATCG | 1 cut(s) | 964 |
| PleI | GAGTC | 1 cut(s) | 51 |
| PpsI | GAGTC | 1 cut(s) | 51 |
| Ppu21I | YACGTR | 1 cut(s) | 39 |
| Psp1406I | AACGTT | 1 cut(s) | 194 |
| Psp6I | CCWGG | 1 cut(s) | 244 |
| PspGI | CCWGG | 1 cut(s) | 244 |
| PspN4I | GGNNCC | 1 cut(s) | 121 |
| PsuI | RGATCY | 1 cut(s) | 673 |
| PvuI | CGATCG | 1 cut(s) | 964 |
| RsaI | GTAC | 4 cut(s) | 269, 446, 683, 969 |
| RsaNI | GTAC | 4 cut(s) | 268, 445, 682, 968 |
| RseI | CAYNNNNRTG | 2 cut(s) | 114, 224 |
| SalI | GTCGAC | 1 cut(s) | 868 |
| SaqAI | TTAA | 3 cut(s) | 422, 491, 818 |
| SatI | GCNGC | 1 cut(s) | 741 |
| Sau3AI | GATC | 4 cut(s) | 99, 568, 673, 961 |
| SchI | GAGTC | 1 cut(s) | 52 |
| ScrFI | CCNGG | 4 cut(s) | 203, 246, 776, 777 |
| SfaNI | GCATC | 5 cut(s) | 604, 626, 669, 823, 889 |
| SfuI | TTCGAA | 1 cut(s) | 252 |
| SmaI | CCCGGG | 1 cut(s) | 777 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 114, 224 |
| SmlI | CTYRAG | 2 cut(s) | 8, 764 |
| SmoI | CTYRAG | 2 cut(s) | 8, 764 |
| Sse9I | AATT | 5 cut(s) | 272, 419, 704, 786, 815 |
| SsiI | CCGC | 3 cut(s) | 142, 836, 953 |
| SspMI | CTAG | 2 cut(s) | 47, 318 |
| StyD4I | CCNGG | 4 cut(s) | 201, 244, 774, 775 |
| TaaI | ACNGT | 1 cut(s) | 937 |
| TaiI | ACGT | 3 cut(s) | 41, 197, 446 |
| TaqI | TCGA | 7 cut(s) | 171, 187, 252, 367, 396, 869, 964 |
| TasI | AATT | 5 cut(s) | 272, 419, 704, 786, 815 |
| TatI | WGTACW | 1 cut(s) | 267 |
| TfiI | GAWTC | 1 cut(s) | 13 |
| Tru1I | TTAA | 3 cut(s) | 422, 491, 818 |
| Tru9I | TTAA | 3 cut(s) | 422, 491, 818 |
| TscAI | CASTG | 1 cut(s) | 516 |
| TseI | GCWGC | 1 cut(s) | 740 |
| TspDTI | ATGAA | 1 cut(s) | 697 |
| TspGWI | ACGGA | 1 cut(s) | 315 |
| TspMI | CCCGGG | 1 cut(s) | 775 |
| TspRI | CASTG | 1 cut(s) | 516 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 977 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 801 |
| XapI | RAATTY | 2 cut(s) | 272, 786 |
| XbaI | TCTAGA | 1 cut(s) | 317 |
| XmaI | CCCGGG | 1 cut(s) | 775 |
| XmiI | GTMKAC | 2 cut(s) | 93, 869 |
| XspI | CTAG | 2 cut(s) | 47, 318 |
| Zsp2I | ATGCAT | 1 cut(s) | 619 |