Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 3 - 146 | 8.6e-36 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 427, 704 |
| AccI | GTMKAC | 1 cut(s) | 415 |
| AclWI | GGATC | 2 cut(s) | 12, 607 |
| AcoI | YGGCCR | 2 cut(s) | 536, 760 |
| AcsI | RAATTY | 1 cut(s) | 351 |
| AfaI | GTAC | 2 cut(s) | 137, 461 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 650 |
| AgsI | TTSAA | 2 cut(s) | 254, 666 |
| AjnI | CCWGG | 4 cut(s) | 13, 335, 643, 762 |
| AluBI | AGCT | 3 cut(s) | 95, 119, 608 |
| AluI | AGCT | 3 cut(s) | 95, 119, 608 |
| Alw26I | GTCTC | 1 cut(s) | 389 |
| AlwI | GGATC | 2 cut(s) | 12, 607 |
| AoxI | GGCC | 2 cut(s) | 536, 760 |
| ApoI | RAATTY | 1 cut(s) | 351 |
| AseI | ATTAAT | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 2 cut(s) | 78, 245 |
| BalI | TGGCCA | 1 cut(s) | 762 |
| BauI | CACGAG | 1 cut(s) | 90 |
| BciT130I | CCWGG | 4 cut(s) | 15, 337, 645, 764 |
| BcoDI | GTCTC | 1 cut(s) | 389 |
| BfaI | CTAG | 1 cut(s) | 407 |
| BfuAI | ACCTGC | 2 cut(s) | 427, 704 |
| BglII | AGATCT | 2 cut(s) | 265, 295 |
| Bme1390I | CCNGG | 4 cut(s) | 15, 337, 645, 764 |
| BmrFI | CCNGG | 4 cut(s) | 15, 337, 645, 764 |
| BmrI | ACTGGG | 1 cut(s) | 718 |
| BmsI | GCATC | 2 cut(s) | 284, 691 |
| BmuI | ACTGGG | 1 cut(s) | 718 |
| BpuEI | CTTGAG | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 1 cut(s) | 336 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 650 |
| Bse1I | ACTGG | 3 cut(s) | 235, 456, 713 |
| Bse3DI | GCAATG | 1 cut(s) | 543 |
| BseBI | CCWGG | 4 cut(s) | 15, 337, 645, 764 |
| BseDI | CCNNGG | 1 cut(s) | 336 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 650 |
| BseMI | GCAATG | 1 cut(s) | 543 |
| BseMII | CTCAG | 2 cut(s) | 447, 614 |
| BseNI | ACTGG | 3 cut(s) | 235, 456, 713 |
| BseRI | GAGGAG | 1 cut(s) | 260 |
| BsgI | GTGCAG | 1 cut(s) | 624 |
| BshFI | GGCC | 2 cut(s) | 538, 762 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 650 |
| BsmAI | GTCTC | 1 cut(s) | 389 |
| BsmI | GAATGC | 1 cut(s) | 408 |
| BsnI | GGCC | 2 cut(s) | 538, 762 |
| Bsp143I | GATC | 4 cut(s) | 4, 265, 295, 612 |
| BspANI | GGCC | 2 cut(s) | 538, 762 |
| BspCNI | CTCAG | 2 cut(s) | 448, 615 |
| BspMI | ACCTGC | 2 cut(s) | 427, 704 |
| BspPI | GGATC | 2 cut(s) | 12, 607 |
| BsrDI | GCAATG | 1 cut(s) | 543 |
| BsrI | ACTGG | 3 cut(s) | 235, 456, 713 |
| BssECI | CCNNGG | 1 cut(s) | 336 |
| BssMI | GATC | 4 cut(s) | 4, 265, 295, 612 |
| BssSI | CACGAG | 1 cut(s) | 90 |
| Bst2BI | CACGAG | 1 cut(s) | 90 |
| Bst2UI | CCWGG | 4 cut(s) | 15, 337, 645, 764 |
| BstC8I | GCNNGC | 3 cut(s) | 28, 273, 490 |
| BstDEI | CTNAG | 2 cut(s) | 456, 623 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 648 |
| BstKTI | GATC | 4 cut(s) | 7, 268, 298, 615 |
| BstMAI | GTCTC | 1 cut(s) | 389 |
| BstMBI | GATC | 4 cut(s) | 4, 265, 295, 612 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 710 |
| BstNI | CCWGG | 4 cut(s) | 15, 337, 645, 764 |
| BstSCI | CCNGG | 4 cut(s) | 13, 335, 643, 762 |
| BstX2I | RGATCY | 3 cut(s) | 4, 265, 295 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 96 |
| BstYI | RGATCY | 3 cut(s) | 4, 265, 295 |
| BsuRI | GGCC | 2 cut(s) | 538, 762 |
| BveI | ACCTGC | 2 cut(s) | 427, 704 |
| Cac8I | GCNNGC | 3 cut(s) | 28, 273, 490 |
| CseI | GACGC | 1 cut(s) | 113 |
| Csp6I | GTAC | 2 cut(s) | 136, 460 |
| CviAII | CATG | 1 cut(s) | 577 |
| CviJI | RGCY | 7 cut(s) | 95, 119, 455, 488, 538, 608, 762 |
| CviKI_1 | RGCY | 7 cut(s) | 95, 119, 455, 488, 538, 608, 762 |
| CviQI | GTAC | 2 cut(s) | 136, 460 |
| DdeI | CTNAG | 2 cut(s) | 456, 623 |
| DpnI | GATC | 4 cut(s) | 6, 267, 297, 614 |
| DpnII | GATC | 4 cut(s) | 4, 265, 295, 612 |
| DraI | TTTAAA | 1 cut(s) | 633 |
| EaeI | YGGCCR | 2 cut(s) | 536, 760 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 648 |
| EcoRII | CCWGG | 4 cut(s) | 13, 335, 643, 762 |
| EcoT22I | ATGCAT | 1 cut(s) | 582 |
| FaeI | CATG | 1 cut(s) | 580 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 255, 287 |
| FatI | CATG | 1 cut(s) | 576 |
| FauNDI | CATATG | 2 cut(s) | 550, 600 |
| FblI | GTMKAC | 1 cut(s) | 415 |
| FspBI | CTAG | 1 cut(s) | 407 |
| HaeIII | GGCC | 2 cut(s) | 538, 762 |
| HgaI | GACGC | 1 cut(s) | 113 |
| Hin1II | CATG | 1 cut(s) | 580 |
| HincII | GTYRAC | 1 cut(s) | 390 |
| HindII | GTYRAC | 1 cut(s) | 390 |
| HinfI | GANTC | 3 cut(s) | 75, 108, 568 |
| HphI | GGTGA | 2 cut(s) | 78, 245 |
| Hpy166II | GTNNAC | 2 cut(s) | 390, 416 |
| Hpy188I | TCNGA | 7 cut(s) | 154, 171, 244, 280, 498, 624, 745 |
| Hpy188III | TCNNGA | 2 cut(s) | 348, 680 |
| Hpy8I | GTNNAC | 2 cut(s) | 390, 416 |
| Hpy99I | CGWCG | 1 cut(s) | 129 |
| HpyAV | CCTTC | 2 cut(s) | 176, 478 |
| HpyCH4V | TGCA | 6 cut(s) | 275, 548, 554, 580, 641, 704 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 710 |
| HpyF3I | CTNAG | 2 cut(s) | 456, 623 |
| Hsp92II | CATG | 1 cut(s) | 580 |
| Kzo9I | GATC | 4 cut(s) | 4, 265, 295, 612 |
| LweI | GCATC | 2 cut(s) | 284, 691 |
| MaeI | CTAG | 1 cut(s) | 407 |
| MaeIII | GTNAC | 1 cut(s) | 721 |
| MalI | GATC | 4 cut(s) | 6, 267, 297, 614 |
| MboI | GATC | 4 cut(s) | 4, 265, 295, 612 |
| MboII | GAAGA | 1 cut(s) | 117 |
| MflI | RGATCY | 3 cut(s) | 4, 265, 295 |
| MlsI | TGGCCA | 1 cut(s) | 762 |
| MluCI | AATT | 5 cut(s) | 188, 225, 238, 351, 572 |
| MluNI | TGGCCA | 1 cut(s) | 762 |
| MlyI | GAGTC | 2 cut(s) | 69, 577 |
| MnlI | CCTC | 7 cut(s) | 16, 29, 238, 241, 322, 492, 618 |
| Mox20I | TGGCCA | 1 cut(s) | 762 |
| Mph1103I | ATGCAT | 1 cut(s) | 582 |
| MscI | TGGCCA | 1 cut(s) | 762 |
| MseI | TTAA | 6 cut(s) | 56, 191, 260, 309, 515, 632 |
| Msp20I | TGGCCA | 1 cut(s) | 762 |
| MspR9I | CCNGG | 4 cut(s) | 15, 337, 645, 764 |
| Mva1269I | GAATGC | 1 cut(s) | 408 |
| MvaI | CCWGG | 4 cut(s) | 15, 337, 645, 764 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 710 |
| NdeI | CATATG | 2 cut(s) | 550, 600 |
| NdeII | GATC | 4 cut(s) | 4, 265, 295, 612 |
| NlaIII | CATG | 1 cut(s) | 580 |
| NmeAIII | GCCGAG | 1 cut(s) | 514 |
| NsiI | ATGCAT | 1 cut(s) | 582 |
| PctI | GAATGC | 1 cut(s) | 408 |
| PfeI | GAWTC | 1 cut(s) | 108 |
| PleI | GAGTC | 2 cut(s) | 69, 576 |
| PpsI | GAGTC | 2 cut(s) | 69, 576 |
| PshBI | ATTAAT | 1 cut(s) | 515 |
| Psp6I | CCWGG | 4 cut(s) | 13, 335, 643, 762 |
| PspGI | CCWGG | 4 cut(s) | 13, 335, 643, 762 |
| PsuI | RGATCY | 3 cut(s) | 4, 265, 295 |
| RsaI | GTAC | 2 cut(s) | 137, 461 |
| RsaNI | GTAC | 2 cut(s) | 136, 460 |
| SaqAI | TTAA | 6 cut(s) | 56, 191, 260, 309, 515, 632 |
| Sau3AI | GATC | 4 cut(s) | 4, 265, 295, 612 |
| SchI | GAGTC | 2 cut(s) | 69, 577 |
| ScrFI | CCNGG | 4 cut(s) | 15, 337, 645, 764 |
| SfaNI | GCATC | 2 cut(s) | 284, 691 |
| SmlI | CTYRAG | 1 cut(s) | 114 |
| SmoI | CTYRAG | 1 cut(s) | 114 |
| Sse9I | AATT | 5 cut(s) | 188, 225, 238, 351, 572 |
| SspI | AATATT | 1 cut(s) | 314 |
| SspMI | CTAG | 1 cut(s) | 407 |
| StyD4I | CCNGG | 4 cut(s) | 13, 335, 643, 762 |
| TasI | AATT | 5 cut(s) | 188, 225, 238, 351, 572 |
| TfiI | GAWTC | 1 cut(s) | 108 |
| Tru1I | TTAA | 6 cut(s) | 56, 191, 260, 309, 515, 632 |
| Tru9I | TTAA | 6 cut(s) | 56, 191, 260, 309, 515, 632 |
| TspDTI | ATGAA | 2 cut(s) | 305, 565 |
| TspGWI | ACGGA | 2 cut(s) | 605, 740 |
| VspI | ATTAAT | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 648 |
| XapI | RAATTY | 1 cut(s) | 351 |
| XmiI | GTMKAC | 1 cut(s) | 415 |
| XspI | CTAG | 1 cut(s) | 407 |
| Zsp2I | ATGCAT | 1 cut(s) | 582 |