FvH4_4g13391

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000071
Physical Location & Seq
Forward (+)
17022952 .. 17024937
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13391.t1

Sequence Viewer

Length: 1986 bp
ATGACTCCTCCAATTTCTCATCCAAATTCCAAGTCTTCCGCTGACTCTCACTCTTCTAATCATCTTCCTTATTCGGCCACACCATCAGACCACATCCTTTCACCACCACTAGATACAAACCCTATCATTCCTTCTGCCAATGAGCCTAATAACATTCCGCCATCTATTCCTACTTCACCACCTTCACCGCCACGTCAACCATCACCACCACCACCACGAAGATCTACTCGAGCCACTAAGGTACCTTCCGCATTGCAGGACTTTCATATTGATGCAGCCCTCCCATCACGCACCGGACCGTCATCTTCTCCGACCGAGGTTCCTATCCCAGGTACTGCTCATAGCCTCTCCCAAGTTTTGTCTTATGCTAACCTCTCTTCCTCTCATAGAACTTTTACTGCCAATATTACCTTGCAAAAAGAACCCACTTCATTCTCTCAGGCAGTTCGGGACCCTAAATGGAGAGCAGCTATGCAACAGGAAATTCAAGCACTTCAAGATAACCAGACTTGGAGCTTGGTTCCTCCTCCCGCTCACAAACGCCCAATTGGTTGTAAATGGGTTTACAAGATCAAGTACAACCCCGATGGCACAGTTGAGCGGTACAAGGCCCGGTTAGTGGCTAAGGATTATAGTCAAGTTGAAGGGCTTGATTACAGGGAAACATTTGCGCCGGTTGCTAAGCTCACAACAGTCCGAGTCCTACTCAGTCTTGCGGCTCTGCAAAATTGGCACCTTCACCAATTGGACGTCAACAATGCCTTTCTCAATGGCGACCTCACTGAAGATGTGTACATGCACCTCCCTCCTGGCTTCGAACGAAAGGGGGAGAATAGGGTCTGCAAACTCCACAAGTCACTATATGGGTTGAAGCAAGCCTCTAGACAATGGTTTTTGAAGCTATCCTCCGCACTAAAGTCAGCCGGGTTCAAGCAATCATGGTCTGATTATTCATTATTCGTCCGAAGCCATGAAGGTATTTTTACAGCTTTGTTGGTCTATGTTGACGATGTCATTCTAGCAGGAAACAGTTTAGCAGATATCACAGAAACAAAACGTTTCCTTTCGAGCCACTTCAAGCTAAAGGATATGGGGCAATTACGATACTTTCTGGGAATAGAAGTTGCAAGGTCCAAACAGGGAATTGCCCTAAGTCAAAGGAAGTACGCATTGGAAATCCTTGAGGATACGGGATTCCTGGGAGCAAAACCATCACAGTTTCCAGTTAAGCAGAATGCAACGCTTACACAAGGAGGTGGAGATTTATTGGAAGATGCATCACAATATCGAAGGCTGGTTGGGCGTCTCATTTACCTAACCATCACAAGACCGGATCTTGTATATGCAGTTCACATACTCAGTCAGTTCATGGACAAACCAAGACAACCCCACTTGGATGCAGCGCACAAGGTATTGAGATACATCAAACAAACACCTGGTCAAGGAATTTTGTTGCCTTCCACAGGGTCACTAGAGCTAAGAGCGTATTGTGACGCAGACTGGGCTCGTTGCAAGGACACTCGAAGATCAACAACTGGCTATTGTATCTTTCTTGGACATGCTCCTATCTCATGGAAAACGAAGAAACAAGGTACAGTCTCACGTTCGAGTGCAGAGGCTGAGTACCGTTCAGTGGCCACCACGTGTTGTGAAATTACGTGGCTACAATACATATTGAAGGATTTGAATGTCAGACAAGTGCAATCGGTTAAACTGTTCTGCGATAACCAGGCAGCAATACATATAGCATCAAATCCTGTGTTCCATGAACGAACCAAACATATAGAGATAGACTGCCATGTTGTACGTGAAAAGGTGCAGAGGGGATTGGTACAAACAGAACACATACGGACCAAGGAACAACCAGCAGACATTTTCACAAAGCCATTGAGTTCGAACCAGTTCACTACATTACTGGGCAAGTTAGGAGTGATTAACATACACTCCAACTTGAGGGGGAGTATTGAAGGAAAGAATCCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

662

Amino Acids

73.86

Weight (kDa)

9.51

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 168 - 409 2.2e-73 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 753
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 241, 732
AccBSI CCGCTC 2 cut(s) 533, 601
AciI CCGC 8 cut(s) 39, 158, 188, 249, 531, 601, 716, 909
AclI AACGTT 1 cut(s) 1057
AclWI GGATC 1 cut(s) 1341
AcoI YGGCCR 2 cut(s) 75, 1635
AcsI RAATTY 3 cut(s) 25, 483, 1446
AcuI CTGAAG 1 cut(s) 804
AcvI CACGTG 1 cut(s) 1644
AcyI GRCGYC 2 cut(s) 750, 1303
AdeI CACNNNGTG 1 cut(s) 1644
AfiI CCNNNNNNNGG 6 cut(s) 329, 619, 1442, 1463, 1633, 1953
AflIII ACRYGT 1 cut(s) 1643
AjiI CACGTC 1 cut(s) 194
AjnI CCWGG 5 cut(s) 328, 808, 1197, 1435, 1728
AjuI GAANNNNNNNTTGG 2 cut(s) 1154, 1186
AluBI AGCT 7 cut(s) 470, 516, 685, 901, 989, 1081, 1477
AluI AGCT 7 cut(s) 470, 516, 685, 901, 989, 1081, 1477
Alw26I GTCTC 2 cut(s) 1310, 1603
AlwI GGATC 1 cut(s) 1341
AlwNI CAGNNNCTG 2 cut(s) 335, 1619
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 3 cut(s) 75, 609, 1635
ApeKI GCWGC 4 cut(s) 275, 467, 1400, 1733
ApoI RAATTY 3 cut(s) 25, 483, 1446
ArsI GACNNNNNNTTYG 4 cut(s) 17, 49, 1423, 1455
Asp700I GAANNNNTTC 1 cut(s) 1901
Asp718I GGTACC 1 cut(s) 241
AspLEI GCGC 2 cut(s) 673, 1405
AspS9I GGNCC 5 cut(s) 296, 451, 610, 1131, 1851
AsuC2I CCSGG 2 cut(s) 613, 925
AsuHPI GGTGA 5 cut(s) 93, 168, 177, 195, 731
AsuII TTCGAA 2 cut(s) 816, 1895
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 4 cut(s) 296, 451, 1131, 1851
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BalI TGGCCA 1 cut(s) 1637
BanI GGYRCC 2 cut(s) 241, 732
BanII GRGCYC 1 cut(s) 1507
BbrPI CACGTG 1 cut(s) 1644
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 287, 479, 1412, 1745
BccI CCATC 7 cut(s) 91, 169, 208, 292, 581, 1219, 1328
BciT130I CCWGG 5 cut(s) 330, 810, 1199, 1437, 1730
BciVI GTATCC 1 cut(s) 1180
BcnI CCSGG 2 cut(s) 613, 925
BcoDI GTCTC 2 cut(s) 1310, 1603
BfaI CTAG 4 cut(s) 110, 882, 1019, 1472
BfuI GTATCC 1 cut(s) 1180
BglII AGATCT 1 cut(s) 221
BisI GCNGC 5 cut(s) 276, 468, 717, 1401, 1734
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 5 cut(s) 277, 469, 718, 1402, 1735
Bme1390I CCNGG 7 cut(s) 330, 613, 810, 925, 1199, 1437, 1730
Bme18I GGWCC 4 cut(s) 296, 451, 1131, 1851
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 5 cut(s) 296, 451, 610, 1131, 1851
BmiI GGNNCC 6 cut(s) 243, 321, 452, 453, 522, 734
BmrFI CCNGG 7 cut(s) 330, 613, 810, 925, 1199, 1437, 1730
BmrI ACTGGG 2 cut(s) 1510, 1925
BmsI GCATC 5 cut(s) 262, 1264, 1286, 1387, 1757
BmuI ACTGGG 2 cut(s) 1510, 1925
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 690, 722
Bpu10I CCTNAGC 1 cut(s) 624
Bpu1102I GCTNAGC 1 cut(s) 681
Bpu14I TTCGAA 2 cut(s) 816, 1895
BpuEI CTTGAG 2 cut(s) 1202, 1972
BpuMI CCSGG 2 cut(s) 613, 925
BsaAI YACGTR 3 cut(s) 1644, 1659, 1808
BsaHI GRCGYC 2 cut(s) 750, 1303
BsaJI CCNNGG 4 cut(s) 315, 328, 1198, 1854
BsaWI WCCGGW 2 cut(s) 293, 1330
BsaXI ACNNNNNCTCC 2 cut(s) 1928, 1958
Bsc4I CCNNNNNNNGG 6 cut(s) 329, 619, 1442, 1463, 1633, 1953
Bse118I RCCGGY 1 cut(s) 673
Bse1I ACTGG 5 cut(s) 1223, 1505, 1540, 1900, 1920
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 5 cut(s) 330, 810, 1199, 1437, 1730
BseDI CCNNGG 4 cut(s) 315, 328, 1198, 1854
BseGI GGATG 3 cut(s) 19, 93, 1402
BseLI CCNNNNNNNGG 6 cut(s) 329, 619, 1442, 1463, 1633, 1953
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 4 cut(s) 452, 721, 1372, 1611
BseNI ACTGG 5 cut(s) 1223, 1505, 1540, 1900, 1920
BseRI GAGGAG 1 cut(s) 516
BseXI GCAGC 4 cut(s) 287, 479, 1412, 1745
BsgI GTGCAG 2 cut(s) 1632, 1838
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 77, 611, 1637
BshNI GGYRCC 2 cut(s) 241, 732
BsiEI CGRYCG 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 5 cut(s) 294, 613, 674, 924, 1331
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 6 cut(s) 329, 619, 1442, 1463, 1633, 1953
BsmAI GTCTC 2 cut(s) 1310, 1603
BsmBI CGTCTC 1 cut(s) 1310
BsmFI GGGAC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 1240
BsnI GGCC 3 cut(s) 77, 611, 1637
BsoBI CYCGRG 1 cut(s) 228
Bsp119I TTCGAA 2 cut(s) 816, 1895
Bsp1286I GDGCHC 1 cut(s) 1507
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 4 cut(s) 221, 570, 1333, 1526
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 8 cut(s) 39, 158, 188, 249, 531, 601, 716, 909
BspANI GGCC 3 cut(s) 77, 611, 1637
BspCNI CTCAG 4 cut(s) 451, 720, 1371, 1612
BspLI GGNNCC 6 cut(s) 243, 321, 452, 453, 522, 734
BspPI GGATC 1 cut(s) 1341
BspT104I TTCGAA 2 cut(s) 816, 1895
BspT107I GGYRCC 2 cut(s) 241, 732
BsrBI CCGCTC 2 cut(s) 533, 601
BsrDI GCAATG 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 673
BsrGI TGTACA 1 cut(s) 792
BsrI ACTGG 5 cut(s) 1223, 1505, 1540, 1900, 1920
BssAI RCCGGY 1 cut(s) 673
BssECI CCNNGG 4 cut(s) 315, 328, 1198, 1854
BssMI GATC 4 cut(s) 221, 570, 1333, 1526
BssNI GRCGYC 2 cut(s) 750, 1303
BssT1I CCWWGG 1 cut(s) 1854
Bst2UI CCWGG 5 cut(s) 330, 810, 1199, 1437, 1730
Bst4CI ACNGT 8 cut(s) 300, 595, 694, 1031, 1218, 1597, 1628, 1716
Bst6I CTCTTC 2 cut(s) 58, 382
BstACI GRCGYC 2 cut(s) 750, 1303
BstAUI TGTACA 1 cut(s) 792
BstBAI YACGTR 3 cut(s) 1644, 1659, 1808
BstBI TTCGAA 2 cut(s) 816, 1895
BstC8I GCNNGC 1 cut(s) 876
BstDEI CTNAG 9 cut(s) 237, 438, 624, 681, 707, 1151, 1358, 1478, 1620
BstENI CCTNNNNNAGG 3 cut(s) 327, 1440, 1461
BstF5I GGATG 3 cut(s) 19, 93, 1402
BstHHI GCGC 2 cut(s) 673, 1405
BstKTI GATC 4 cut(s) 224, 573, 1336, 1529
BstMAI GTCTC 2 cut(s) 1310, 1603
BstMBI GATC 4 cut(s) 221, 570, 1333, 1526
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 4 cut(s) 677, 730, 1300, 1502
BstNI CCWGG 5 cut(s) 330, 810, 1199, 1437, 1730
BstNSI RCATGY 2 cut(s) 799, 1562
BstSCI CCNGG 7 cut(s) 328, 611, 808, 923, 1197, 1435, 1728
BstV1I GCAGC 4 cut(s) 287, 479, 1412, 1745
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 2 cut(s) 221, 1333
BstYI RGATCY 2 cut(s) 221, 1333
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 3 cut(s) 77, 611, 1637
BtrI CACGTC 1 cut(s) 194
BtsCI GGATG 3 cut(s) 19, 93, 1402
BtsIMutI CAGTG 2 cut(s) 780, 1638
Cac8I GCNNGC 1 cut(s) 876
CaiI CAGNNNCTG 2 cut(s) 335, 1619
CfoI GCGC 2 cut(s) 673, 1405
Cfr10I RCCGGY 1 cut(s) 673
Cfr13I GGNCC 5 cut(s) 296, 451, 610, 1131, 1851
CpoI CGGWCCG 1 cut(s) 296
CseI GACGC 2 cut(s) 1292, 1502
CsiI ACCWGGT 1 cut(s) 1435
CspI CGGWCCG 1 cut(s) 296
CviAII CATG 8 cut(s) 796, 939, 971, 1369, 1559, 1572, 1766, 1799
DdeI CTNAG 9 cut(s) 237, 438, 624, 681, 707, 1151, 1358, 1478, 1620
DpnI GATC 4 cut(s) 223, 572, 1335, 1528
DpnII GATC 4 cut(s) 221, 570, 1333, 1526
DraIII CACNNNGTG 1 cut(s) 1644
EaeI YGGCCR 2 cut(s) 75, 1635
Eam1104I CTCTTC 2 cut(s) 58, 382
EarI CTCTTC 2 cut(s) 58, 382
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 1854
Eco24I GRGCYC 1 cut(s) 1507
Eco32I GATATC 1 cut(s) 1042
Eco47I GGWCC 4 cut(s) 296, 451, 1131, 1851
Eco57I CTGAAG 1 cut(s) 804
Eco72I CACGTG 1 cut(s) 1644
Eco88I CYCGRG 1 cut(s) 228
EcoNI CCTNNNNNAGG 3 cut(s) 327, 1440, 1461
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 5 cut(s) 328, 808, 1197, 1435, 1728
EcoRV GATATC 1 cut(s) 1042
EcoT14I CCWWGG 1 cut(s) 1854
EcoT22I ATGCAT 1 cut(s) 1279
EcoT38I GRGCYC 1 cut(s) 1507
ErhI CCWWGG 1 cut(s) 1854
Esp3I CGTCTC 1 cut(s) 1310
FaeI CATG 8 cut(s) 799, 942, 974, 1372, 1562, 1575, 1769, 1802
FaqI GGGAC 1 cut(s) 464
FatI CATG 8 cut(s) 795, 938, 970, 1368, 1558, 1571, 1765, 1798
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 5 cut(s) 276, 468, 717, 1401, 1734
FokI GGATG 3 cut(s) 6, 80, 1409
FriOI GRGCYC 1 cut(s) 1507
Fsp4HI GCNGC 5 cut(s) 276, 468, 717, 1401, 1734
FspBI CTAG 4 cut(s) 110, 882, 1019, 1472
GlaI GCGC 2 cut(s) 672, 1404
GluI GCNGC 5 cut(s) 276, 468, 717, 1401, 1734
HaeIII GGCC 3 cut(s) 77, 611, 1637
HapII CCGG 5 cut(s) 294, 613, 674, 924, 1331
HgaI GACGC 2 cut(s) 1292, 1502
HhaI GCGC 2 cut(s) 673, 1405
Hin1I GRCGYC 2 cut(s) 750, 1303
Hin1II CATG 8 cut(s) 799, 942, 974, 1372, 1562, 1575, 1769, 1802
Hin6I GCGC 2 cut(s) 671, 1403
HinP1I GCGC 2 cut(s) 671, 1403
HincII GTYRAC 3 cut(s) 197, 754, 1006
HindII GTYRAC 3 cut(s) 197, 754, 1006
HinfI GANTC 5 cut(s) 4, 44, 699, 1194, 1975
HpaII CCGG 5 cut(s) 294, 613, 674, 924, 1331
HphI GGTGA 5 cut(s) 93, 168, 177, 195, 731
Hpy166II GTNNAC 7 cut(s) 197, 565, 754, 793, 1006, 1351, 1905
Hpy188I TCNGA 6 cut(s) 88, 312, 698, 946, 965, 1694
Hpy188III TCNNGA 3 cut(s) 449, 497, 882
Hpy8I GTNNAC 7 cut(s) 197, 565, 754, 793, 1006, 1351, 1905
HpyCH4III ACNGT 8 cut(s) 300, 595, 694, 1031, 1218, 1597, 1628, 1716
HpyCH4IV ACGT 7 cut(s) 193, 750, 1057, 1603, 1643, 1658, 1807
HpyF10VI GCNNNNNNNGC 4 cut(s) 677, 730, 1300, 1502
HpyF3I CTNAG 9 cut(s) 237, 438, 624, 681, 707, 1151, 1358, 1478, 1620
HpySE526I ACGT 7 cut(s) 193, 750, 1057, 1603, 1643, 1658, 1807
Hsp92I GRCGYC 2 cut(s) 750, 1303
Hsp92II CATG 8 cut(s) 799, 942, 974, 1372, 1562, 1575, 1769, 1802
HspAI GCGC 2 cut(s) 671, 1403
KflI GGGWCCC 1 cut(s) 451
KpnI GGTACC 1 cut(s) 245
Kzo9I GATC 4 cut(s) 221, 570, 1333, 1526
LmnI GCTCC 3 cut(s) 513, 1202, 1567
Lsp1109I GCAGC 4 cut(s) 287, 479, 1412, 1745
LweI GCATC 5 cut(s) 262, 1264, 1286, 1387, 1757
MabI ACCWGGT 1 cut(s) 1435
MaeI CTAG 4 cut(s) 110, 882, 1019, 1472
MaeII ACGT 7 cut(s) 193, 750, 1057, 1603, 1643, 1658, 1807
MaeIII GTNAC 3 cut(s) 855, 1467, 1490
MalI GATC 4 cut(s) 223, 572, 1335, 1528
MbiI CCGCTC 2 cut(s) 533, 601
MboI GATC 4 cut(s) 221, 570, 1333, 1526
MfeI CAATTG 2 cut(s) 546, 743
MflI RGATCY 2 cut(s) 221, 1333
MhlI GDGCHC 1 cut(s) 1507
MlsI TGGCCA 1 cut(s) 1637
MluNI TGGCCA 1 cut(s) 1637
MlyI GAGTC 2 cut(s) 38, 708
MmeI TCCRAC 2 cut(s) 335, 1971
Mox20I TGGCCA 1 cut(s) 1637
Mph1103I ATGCAT 1 cut(s) 1279
MroXI GAANNNNTTC 1 cut(s) 1901
MscI TGGCCA 1 cut(s) 1637
MseI TTAA 3 cut(s) 1227, 1710, 1935
MslI CAYNNNNRTG 2 cut(s) 270, 1395
Msp20I TGGCCA 1 cut(s) 1637
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 5 cut(s) 294, 613, 674, 924, 1331
MspR9I CCNGG 7 cut(s) 330, 613, 810, 925, 1199, 1437, 1730
MunI CAATTG 2 cut(s) 546, 743
Mva1269I GAATGC 1 cut(s) 1240
MvaI CCWGG 5 cut(s) 330, 810, 1199, 1437, 1730
MwoI GCNNNNNNNGC 4 cut(s) 677, 730, 1300, 1502
NciI CCSGG 2 cut(s) 613, 925
NdeII GATC 4 cut(s) 221, 570, 1333, 1526
NlaIII CATG 8 cut(s) 799, 942, 974, 1372, 1562, 1575, 1769, 1802
NlaIV GGNNCC 6 cut(s) 243, 321, 452, 453, 522, 734
NmuCI GTSAC 3 cut(s) 855, 1467, 1490
NsiI ATGCAT 1 cut(s) 1279
NspI RCATGY 2 cut(s) 799, 1562
NspV TTCGAA 2 cut(s) 816, 1895
PaeR7I CTCGAG 1 cut(s) 228
PctI GAATGC 1 cut(s) 1240
PdmI GAANNNNTTC 1 cut(s) 1901
PfeI GAWTC 2 cut(s) 1194, 1975
PflFI GACNNNGTC 1 cut(s) 1010
PkrI GCNGC 5 cut(s) 277, 469, 718, 1402, 1735
PleI GAGTC 2 cut(s) 38, 707
PmaCI CACGTG 1 cut(s) 1644
PmlI CACGTG 1 cut(s) 1644
PpsI GAGTC 2 cut(s) 38, 707
Ppu21I YACGTR 3 cut(s) 1644, 1659, 1808
PpuMI RGGWCCY 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 1057
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 5 cut(s) 328, 808, 1197, 1435, 1728
PspCI CACGTG 1 cut(s) 1644
PspGI CCWGG 5 cut(s) 328, 808, 1197, 1435, 1728
PspN4I GGNNCC 6 cut(s) 243, 321, 452, 453, 522, 734
PspPI GGNCC 5 cut(s) 296, 451, 610, 1131, 1851
PspPPI RGGWCCY 1 cut(s) 451
PspXI VCTCGAGB 1 cut(s) 228
PsrI GAACNNNNNNTAC 2 cut(s) 1332, 1364
PstNI CAGNNNCTG 2 cut(s) 335, 1619
PsuI RGATCY 2 cut(s) 221, 1333
PsyI GACNNNGTC 1 cut(s) 1010
RseI CAYNNNNRTG 2 cut(s) 270, 1395
Rsr2I CGGWCCG 1 cut(s) 296
RsrII CGGWCCG 1 cut(s) 296
SaqAI TTAA 3 cut(s) 1227, 1710, 1935
SatI GCNGC 5 cut(s) 276, 468, 717, 1401, 1734
Sau3AI GATC 4 cut(s) 221, 570, 1333, 1526
Sau96I GGNCC 5 cut(s) 296, 451, 610, 1131, 1851
SchI GAGTC 2 cut(s) 38, 708
ScrFI CCNGG 7 cut(s) 330, 613, 810, 925, 1199, 1437, 1730
SduI GDGCHC 1 cut(s) 1507
SexAI ACCWGGT 1 cut(s) 1435
SfaNI GCATC 5 cut(s) 262, 1264, 1286, 1387, 1757
Sfr274I CTCGAG 1 cut(s) 228
SfuI TTCGAA 2 cut(s) 816, 1895
SinI GGWCC 4 cut(s) 296, 451, 1131, 1851
SlaI CTCGAG 1 cut(s) 228
SmiMI CAYNNNNRTG 2 cut(s) 270, 1395
SmlI CTYRAG 3 cut(s) 228, 1181, 1951
SmoI CTYRAG 3 cut(s) 228, 1181, 1951
SsiI CCGC 8 cut(s) 39, 158, 188, 249, 531, 601, 716, 909
SspI AATATT 1 cut(s) 406
SspMI CTAG 4 cut(s) 110, 882, 1019, 1472
StyD4I CCNGG 7 cut(s) 328, 611, 808, 923, 1197, 1435, 1728
StyI CCWWGG 1 cut(s) 1854
TaaI ACNGT 8 cut(s) 300, 595, 694, 1031, 1218, 1597, 1628, 1716
TaiI ACGT 7 cut(s) 196, 753, 1060, 1606, 1646, 1661, 1810
TaqI TCGA 7 cut(s) 229, 816, 1067, 1288, 1522, 1607, 1895
TaqII GACCGA 1 cut(s) 329
TatI WGTACW 2 cut(s) 576, 792
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 2 cut(s) 1194, 1975
Tru1I TTAA 3 cut(s) 1227, 1710, 1935
Tru9I TTAA 3 cut(s) 1227, 1710, 1935
TscAI CASTG 2 cut(s) 787, 1638
TseFI GTSAC 3 cut(s) 855, 1467, 1490
TseI GCWGC 4 cut(s) 275, 467, 1400, 1733
Tsp45I GTSAC 3 cut(s) 855, 1467, 1490
TspDTI ATGAA 6 cut(s) 254, 420, 942, 987, 1357, 1782
TspGWI ACGGA 1 cut(s) 1864
TspRI CASTG 2 cut(s) 787, 1638
Tth111I GACNNNGTC 1 cut(s) 1010
VpaK11BI GGWCC 4 cut(s) 296, 451, 1131, 1851
XagI CCTNNNNNAGG 3 cut(s) 327, 1440, 1461
XapI RAATTY 3 cut(s) 25, 483, 1446
XbaI TCTAGA 1 cut(s) 881
XceI RCATGY 2 cut(s) 799, 1562
XhoI CTCGAG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 1901
XspI CTAG 4 cut(s) 110, 882, 1019, 1472
ZraI GACGTC 1 cut(s) 751
Zsp2I ATGCAT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.