transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 31 - 162 | 1.5e-44 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 195 |
| AciI | CCGC | 1 cut(s) | 96 |
| AclWI | GGATC | 3 cut(s) | 129, 142, 365 |
| AcsI | RAATTY | 1 cut(s) | 71 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 144 |
| AgsI | TTSAA | 4 cut(s) | 34, 323, 475, 517 |
| AjnI | CCWGG | 1 cut(s) | 349 |
| AluBI | AGCT | 5 cut(s) | 16, 121, 167, 391, 445 |
| AluI | AGCT | 5 cut(s) | 16, 121, 167, 391, 445 |
| Alw26I | GTCTC | 1 cut(s) | 200 |
| AlwI | GGATC | 3 cut(s) | 129, 142, 365 |
| Ama87I | CYCGRG | 1 cut(s) | 374 |
| AoxI | GGCC | 1 cut(s) | 272 |
| ApoI | RAATTY | 1 cut(s) | 71 |
| AsuHPI | GGTGA | 1 cut(s) | 326 |
| AsuII | TTCGAA | 1 cut(s) | 69 |
| AvaI | CYCGRG | 1 cut(s) | 374 |
| BamHI | GGATCC | 1 cut(s) | 134 |
| BauI | CACGAG | 1 cut(s) | 426 |
| BccI | CCATC | 1 cut(s) | 125 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 137, 171, 407, 441 |
| BciT130I | CCWGG | 1 cut(s) | 351 |
| BcoDI | GTCTC | 1 cut(s) | 200 |
| Bme1390I | CCNGG | 1 cut(s) | 351 |
| BmeT110I | CYCGRG | 1 cut(s) | 374 |
| BmiI | GGNNCC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 351 |
| Bpu14I | TTCGAA | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 349 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 199, 229 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 144 |
| Bse3DI | GCAATG | 1 cut(s) | 489 |
| BseBI | CCWGG | 1 cut(s) | 351 |
| BseDI | CCNNGG | 2 cut(s) | 138, 349 |
| BseGI | GGATG | 3 cut(s) | 136, 295, 355 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 144 |
| BseMI | GCAATG | 1 cut(s) | 489 |
| BseMII | CTCAG | 1 cut(s) | 449 |
| BseRI | GAGGAG | 1 cut(s) | 414 |
| Bsh1285I | CGRYCG | 1 cut(s) | 100 |
| BshFI | GGCC | 1 cut(s) | 274 |
| BsiEI | CGRYCG | 1 cut(s) | 100 |
| BsiHKCI | CYCGRG | 1 cut(s) | 374 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 144 |
| BsmAI | GTCTC | 1 cut(s) | 200 |
| BsnI | GGCC | 1 cut(s) | 274 |
| BsoBI | CYCGRG | 1 cut(s) | 374 |
| Bsp119I | TTCGAA | 1 cut(s) | 69 |
| Bsp143I | GATC | 3 cut(s) | 134, 316, 370 |
| BspACI | CCGC | 1 cut(s) | 96 |
| BspANI | GGCC | 1 cut(s) | 274 |
| BspCNI | CTCAG | 1 cut(s) | 450 |
| BspHI | TCATGA | 2 cut(s) | 42, 367 |
| BspLI | GGNNCC | 1 cut(s) | 136 |
| BspPI | GGATC | 3 cut(s) | 129, 142, 365 |
| BspT104I | TTCGAA | 1 cut(s) | 69 |
| BsrDI | GCAATG | 1 cut(s) | 489 |
| BssECI | CCNNGG | 2 cut(s) | 138, 349 |
| BssMI | GATC | 3 cut(s) | 134, 316, 370 |
| BssSI | CACGAG | 1 cut(s) | 426 |
| Bst2BI | CACGAG | 1 cut(s) | 426 |
| Bst2UI | CCWGG | 1 cut(s) | 351 |
| BstBI | TTCGAA | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 2 cut(s) | 14, 389 |
| BstDEI | CTNAG | 1 cut(s) | 458 |
| BstDSI | CCRYGG | 1 cut(s) | 138 |
| BstF5I | GGATG | 3 cut(s) | 136, 295, 355 |
| BstKTI | GATC | 3 cut(s) | 137, 319, 373 |
| BstMAI | GTCTC | 1 cut(s) | 200 |
| BstMBI | GATC | 3 cut(s) | 134, 316, 370 |
| BstMCI | CGRYCG | 1 cut(s) | 100 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 437 |
| BstNI | CCWGG | 1 cut(s) | 351 |
| BstSCI | CCNGG | 1 cut(s) | 349 |
| BstX2I | RGATCY | 1 cut(s) | 134 |
| BstYI | RGATCY | 1 cut(s) | 134 |
| BsuRI | GGCC | 1 cut(s) | 274 |
| BtgI | CCRYGG | 1 cut(s) | 138 |
| BtsCI | GGATG | 3 cut(s) | 136, 295, 355 |
| Cac8I | GCNNGC | 2 cut(s) | 14, 389 |
| CciI | TCATGA | 2 cut(s) | 42, 367 |
| CviAII | CATG | 6 cut(s) | 43, 56, 266, 311, 337, 368 |
| CviJI | RGCY | 8 cut(s) | 16, 121, 155, 167, 274, 391, 411, 445 |
| CviKI_1 | RGCY | 8 cut(s) | 16, 121, 155, 167, 274, 391, 411, 445 |
| DdeI | CTNAG | 1 cut(s) | 458 |
| DpnI | GATC | 3 cut(s) | 136, 318, 372 |
| DpnII | GATC | 3 cut(s) | 134, 316, 370 |
| Eco88I | CYCGRG | 1 cut(s) | 374 |
| EcoRI | GAATTC | 1 cut(s) | 71 |
| EcoRII | CCWGG | 1 cut(s) | 349 |
| EcoT22I | ATGCAT | 2 cut(s) | 304, 489 |
| FaeI | CATG | 6 cut(s) | 46, 59, 269, 314, 340, 371 |
| FatI | CATG | 6 cut(s) | 42, 55, 265, 310, 336, 367 |
| FauNDI | CATATG | 1 cut(s) | 187 |
| FblI | GTMKAC | 1 cut(s) | 195 |
| FokI | GGATG | 3 cut(s) | 143, 302, 342 |
| HaeIII | GGCC | 1 cut(s) | 274 |
| Hin1II | CATG | 6 cut(s) | 46, 59, 269, 314, 340, 371 |
| HindIII | AAGCTT | 2 cut(s) | 119, 389 |
| HphI | GGTGA | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 3 cut(s) | 109, 196, 334 |
| Hpy188I | TCNGA | 1 cut(s) | 130 |
| Hpy188III | TCNNGA | 4 cut(s) | 43, 320, 368, 374 |
| Hpy8I | GTNNAC | 3 cut(s) | 109, 196, 334 |
| HpyAV | CCTTC | 1 cut(s) | 81 |
| HpyCH4V | TGCA | 3 cut(s) | 302, 387, 487 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 437 |
| HpyF3I | CTNAG | 1 cut(s) | 458 |
| Hsp92II | CATG | 6 cut(s) | 46, 59, 269, 314, 340, 371 |
| Kzo9I | GATC | 3 cut(s) | 134, 316, 370 |
| LmnI | GCTCC | 1 cut(s) | 220 |
| LpnPI | CCDG | 3 cut(s) | 231, 336, 363 |
| MalI | GATC | 3 cut(s) | 136, 318, 372 |
| MboI | GATC | 3 cut(s) | 134, 316, 370 |
| MboII | GAAGA | 4 cut(s) | 96, 335, 338, 485 |
| MflI | RGATCY | 1 cut(s) | 134 |
| MluCI | AATT | 1 cut(s) | 71 |
| MnlI | CCTC | 6 cut(s) | 86, 138, 285, 369, 435, 453 |
| Mph1103I | ATGCAT | 2 cut(s) | 304, 489 |
| MseI | TTAA | 1 cut(s) | 413 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| MspR9I | CCNGG | 1 cut(s) | 351 |
| MvaI | CCWGG | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 437 |
| NdeI | CATATG | 1 cut(s) | 187 |
| NdeII | GATC | 3 cut(s) | 134, 316, 370 |
| NlaIII | CATG | 6 cut(s) | 46, 59, 269, 314, 340, 371 |
| NlaIV | GGNNCC | 1 cut(s) | 136 |
| NsiI | ATGCAT | 2 cut(s) | 304, 489 |
| NspV | TTCGAA | 1 cut(s) | 69 |
| PagI | TCATGA | 2 cut(s) | 42, 367 |
| Psp6I | CCWGG | 1 cut(s) | 349 |
| PspGI | CCWGG | 1 cut(s) | 349 |
| PspN4I | GGNNCC | 1 cut(s) | 136 |
| PsuI | RGATCY | 1 cut(s) | 134 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SaqAI | TTAA | 1 cut(s) | 413 |
| Sau3AI | GATC | 3 cut(s) | 134, 316, 370 |
| ScrFI | CCNGG | 1 cut(s) | 351 |
| SetI | ASST | 5 cut(s) | 18, 123, 169, 393, 447 |
| SfuI | TTCGAA | 1 cut(s) | 69 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| Sse9I | AATT | 1 cut(s) | 71 |
| SsiI | CCGC | 1 cut(s) | 96 |
| StyD4I | CCNGG | 1 cut(s) | 349 |
| TaqI | TCGA | 3 cut(s) | 69, 452, 507 |
| TasI | AATT | 1 cut(s) | 71 |
| Tru1I | TTAA | 1 cut(s) | 413 |
| Tru9I | TTAA | 1 cut(s) | 413 |
| TspDTI | ATGAA | 4 cut(s) | 31, 41, 113, 353 |
| TspGWI | ACGGA | 1 cut(s) | 127 |
| XapI | RAATTY | 1 cut(s) | 71 |
| XmiI | GTMKAC | 1 cut(s) | 195 |
| Zsp2I | ATGCAT | 2 cut(s) | 304, 489 |