Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 14 - 57 | 8.8e-09 | Pol polyprotein, beta-barrel domain |
| rve | PF00665 | 98 - 153 | 8.6e-07 | Integrase core domain |
| SH3_retrovirus | PF25597 | 155 - 188 | 5.5e-07 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 375 - 419 | 2e-09 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 417 - 477 | 5.8e-11 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1886 |
| Acc65I | GGTACC | 1 cut(s) | 1465 |
| AccB1I | GGYRCC | 2 cut(s) | 56, 1465 |
| AccII | CGCG | 1 cut(s) | 273 |
| AciI | CCGC | 1 cut(s) | 276 |
| AclWI | GGATC | 6 cut(s) | 240, 668, 681, 1067, 1080, 1219 |
| AcsI | RAATTY | 2 cut(s) | 289, 586 |
| AcuI | CTGAAG | 3 cut(s) | 560, 840, 1956 |
| AdeI | CACNNNGTG | 1 cut(s) | 1726 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 158, 990, 1154 |
| AflII | CTTAAG | 1 cut(s) | 1301 |
| AflIII | ACRYGT | 1 cut(s) | 443 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1606 |
| AhlI | ACTAGT | 1 cut(s) | 851 |
| AjnI | CCWGG | 4 cut(s) | 182, 256, 811, 1328 |
| AluBI | AGCT | 9 cut(s) | 301, 572, 604, 716, 1264, 1448, 1481, 1897, 1917 |
| AluI | AGCT | 9 cut(s) | 301, 572, 604, 716, 1264, 1448, 1481, 1897, 1917 |
| Alw21I | GWGCWC | 3 cut(s) | 265, 606, 1483 |
| Alw26I | GTCTC | 3 cut(s) | 273, 1252, 1382 |
| AlwI | GGATC | 6 cut(s) | 240, 668, 681, 1067, 1080, 1219 |
| Ama87I | CYCGRG | 1 cut(s) | 909 |
| AoxI | GGCC | 1 cut(s) | 1698 |
| ApeKI | GCWGC | 1 cut(s) | 1814 |
| ApoI | RAATTY | 2 cut(s) | 289, 586 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 430, 462 |
| Asp718I | GGTACC | 1 cut(s) | 1465 |
| AspLEI | GCGC | 3 cut(s) | 275, 1506, 2029 |
| AspS9I | GGNCC | 2 cut(s) | 168, 903 |
| AsuHPI | GGTGA | 5 cut(s) | 118, 152, 172, 425, 1307 |
| AsuNHI | GCTAGC | 1 cut(s) | 1264 |
| AvaI | CYCGRG | 1 cut(s) | 909 |
| AvaII | GGWCC | 2 cut(s) | 168, 903 |
| BamHI | GGATCC | 2 cut(s) | 673, 1072 |
| BanI | GGYRCC | 2 cut(s) | 56, 1465 |
| BanII | GRGCYC | 2 cut(s) | 606, 1483 |
| BbsI | GAAGAC | 3 cut(s) | 96, 546, 768 |
| Bbv12I | GWGCWC | 3 cut(s) | 265, 606, 1483 |
| BbvCI | CCTCAGC | 1 cut(s) | 1695 |
| BbvI | GCAGC | 1 cut(s) | 1826 |
| BccI | CCATC | 3 cut(s) | 234, 791, 1202 |
| BciT130I | CCWGG | 4 cut(s) | 184, 258, 813, 1330 |
| BciVI | GTATCC | 1 cut(s) | 1464 |
| BcoDI | GTCTC | 3 cut(s) | 273, 1252, 1382 |
| BcuI | ACTAGT | 1 cut(s) | 851 |
| BfaI | CTAG | 6 cut(s) | 852, 987, 1265, 1527, 1689, 1898 |
| BfmI | CTRYAG | 2 cut(s) | 1167, 1253 |
| BfoI | RGCGCY | 1 cut(s) | 1507 |
| BfrI | CTTAAG | 1 cut(s) | 1301 |
| BfuI | GTATCC | 1 cut(s) | 1464 |
| BisI | GCNGC | 2 cut(s) | 276, 1815 |
| BlsI | GCNGC | 2 cut(s) | 277, 1816 |
| BmcAI | AGTACT | 4 cut(s) | 509, 856, 1307, 1786 |
| Bme1390I | CCNGG | 4 cut(s) | 184, 258, 813, 1330 |
| Bme18I | GGWCC | 2 cut(s) | 168, 903 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1606 |
| BmeT110I | CYCGRG | 1 cut(s) | 909 |
| BmgT120I | GGNCC | 2 cut(s) | 168, 903 |
| BmiI | GGNNCC | 5 cut(s) | 58, 169, 675, 1074, 1467 |
| BmrFI | CCNGG | 4 cut(s) | 184, 258, 813, 1330 |
| BmrI | ACTGGG | 1 cut(s) | 959 |
| BmsI | GCATC | 3 cut(s) | 1051, 1564, 1891 |
| BmtI | GCTAGC | 1 cut(s) | 1268 |
| BmuI | ACTGGG | 1 cut(s) | 959 |
| BpiI | GAAGAC | 3 cut(s) | 96, 546, 768 |
| BpmI | CTGGAG | 1 cut(s) | 702 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1695 |
| Bsa29I | ATCGAT | 1 cut(s) | 1222 |
| BsaAI | YACGTR | 1 cut(s) | 1760 |
| BsaJI | CCNNGG | 3 cut(s) | 183, 421, 1329 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 372, 402, 630, 660 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 158, 990, 1154 |
| Bse1I | ACTGG | 5 cut(s) | 113, 677, 734, 965, 1838 |
| Bse3DI | GCAATG | 1 cut(s) | 1098 |
| BseBI | CCWGG | 4 cut(s) | 184, 258, 813, 1330 |
| BseCI | ATCGAT | 1 cut(s) | 1222 |
| BseDI | CCNNGG | 3 cut(s) | 183, 421, 1329 |
| BseGI | GGATG | 5 cut(s) | 490, 529, 723, 1066, 1102 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 158, 990, 1154 |
| BseMI | GCAATG | 1 cut(s) | 1098 |
| BseMII | CTCAG | 7 cut(s) | 87, 200, 576, 1263, 1440, 1686, 1736 |
| BseNI | ACTGG | 5 cut(s) | 113, 677, 734, 965, 1838 |
| BseRI | GAGGAG | 2 cut(s) | 393, 550 |
| BseXI | GCAGC | 1 cut(s) | 1826 |
| BsgI | GTGCAG | 1 cut(s) | 1076 |
| Bsh1236I | CGCG | 1 cut(s) | 273 |
| Bsh1285I | CGRYCG | 1 cut(s) | 199 |
| BshFI | GGCC | 1 cut(s) | 1700 |
| BshNI | GGYRCC | 2 cut(s) | 56, 1465 |
| BshVI | ATCGAT | 1 cut(s) | 1222 |
| BsiEI | CGRYCG | 1 cut(s) | 199 |
| BsiHKAI | GWGCWC | 3 cut(s) | 265, 606, 1483 |
| BsiHKCI | CYCGRG | 1 cut(s) | 909 |
| BslFI | GGGAC | 1 cut(s) | 1263 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 158, 990, 1154 |
| BsmAI | GTCTC | 3 cut(s) | 273, 1252, 1382 |
| BsmBI | CGTCTC | 1 cut(s) | 273 |
| BsmFI | GGGAC | 1 cut(s) | 1263 |
| BsnI | GGCC | 1 cut(s) | 1700 |
| BsoBI | CYCGRG | 1 cut(s) | 909 |
| Bsp1286I | GDGCHC | 3 cut(s) | 265, 606, 1483 |
| Bsp19I | CCATGG | 1 cut(s) | 421 |
| BspACI | CCGC | 1 cut(s) | 276 |
| BspANI | GGCC | 1 cut(s) | 1700 |
| BspCNI | CTCAG | 7 cut(s) | 88, 201, 575, 1264, 1441, 1687, 1737 |
| BspDI | ATCGAT | 1 cut(s) | 1222 |
| BspFNI | CGCG | 1 cut(s) | 273 |
| BspLI | GGNNCC | 5 cut(s) | 58, 169, 675, 1074, 1467 |
| BspMAI | CTGCAG | 1 cut(s) | 1257 |
| BspOI | GCTAGC | 1 cut(s) | 1268 |
| BspPI | GGATC | 6 cut(s) | 240, 668, 681, 1067, 1080, 1219 |
| BspQI | GCTCTTC | 3 cut(s) | 579, 594, 1932 |
| BspT107I | GGYRCC | 2 cut(s) | 56, 1465 |
| BspTI | CTTAAG | 1 cut(s) | 1301 |
| BsrDI | GCAATG | 1 cut(s) | 1098 |
| BsrI | ACTGG | 5 cut(s) | 113, 677, 734, 965, 1838 |
| BssECI | CCNNGG | 3 cut(s) | 183, 421, 1329 |
| BssT1I | CCWWGG | 1 cut(s) | 421 |
| Bst2UI | CCWGG | 4 cut(s) | 184, 258, 813, 1330 |
| Bst4CI | ACNGT | 2 cut(s) | 267, 1192 |
| Bst6I | CTCTTC | 4 cut(s) | 579, 594, 1652, 1932 |
| BstAFI | CTTAAG | 1 cut(s) | 1301 |
| BstBAI | YACGTR | 1 cut(s) | 1760 |
| BstC8I | GCNNGC | 3 cut(s) | 1234, 1266, 1483 |
| BstDSI | CCRYGG | 1 cut(s) | 421 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 156 |
| BstF5I | GGATG | 5 cut(s) | 490, 529, 723, 1066, 1102 |
| BstFNI | CGCG | 1 cut(s) | 273 |
| BstH2I | RGCGCY | 1 cut(s) | 1507 |
| BstHHI | GCGC | 3 cut(s) | 275, 1506, 2029 |
| BstMAI | GTCTC | 3 cut(s) | 273, 1252, 1382 |
| BstMCI | CGRYCG | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 779, 1261, 1583, 2007 |
| BstNI | CCWGG | 4 cut(s) | 184, 258, 813, 1330 |
| BstNSI | RCATGY | 3 cut(s) | 447, 755, 1865 |
| BstSCI | CCNGG | 4 cut(s) | 182, 256, 811, 1328 |
| BstSFI | CTRYAG | 2 cut(s) | 1167, 1253 |
| BstUI | CGCG | 1 cut(s) | 273 |
| BstV1I | GCAGC | 1 cut(s) | 1826 |
| BstV2I | GAAGAC | 3 cut(s) | 96, 546, 768 |
| BstX2I | RGATCY | 2 cut(s) | 673, 1072 |
| BstYI | RGATCY | 2 cut(s) | 673, 1072 |
| Bsu15I | ATCGAT | 1 cut(s) | 1222 |
| BsuI | GTATCC | 1 cut(s) | 1464 |
| BsuRI | GGCC | 1 cut(s) | 1700 |
| BsuTUI | ATCGAT | 1 cut(s) | 1222 |
| BtgI | CCRYGG | 1 cut(s) | 421 |
| BtsCI | GGATG | 5 cut(s) | 490, 529, 723, 1066, 1102 |
| BtsI | GCAGTG | 1 cut(s) | 1554 |
| BtsIMutI | CAGTG | 3 cut(s) | 120, 1221, 1554 |
| Cac8I | GCNNGC | 3 cut(s) | 1234, 1266, 1483 |
| CfoI | GCGC | 3 cut(s) | 275, 1506, 2029 |
| Cfr13I | GGNCC | 2 cut(s) | 168, 903 |
| ClaI | ATCGAT | 1 cut(s) | 1222 |
| DraI | TTTAAA | 1 cut(s) | 9 |
| DraIII | CACNNNGTG | 1 cut(s) | 1726 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1606 |
| Eam1104I | CTCTTC | 4 cut(s) | 579, 594, 1652, 1932 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1606 |
| EarI | CTCTTC | 4 cut(s) | 579, 594, 1652, 1932 |
| Ecl136II | GAGCTC | 2 cut(s) | 604, 1481 |
| Eco130I | CCWWGG | 1 cut(s) | 421 |
| Eco24I | GRGCYC | 2 cut(s) | 606, 1483 |
| Eco47I | GGWCC | 2 cut(s) | 168, 903 |
| Eco53kI | GAGCTC | 2 cut(s) | 604, 1481 |
| Eco57I | CTGAAG | 3 cut(s) | 560, 840, 1956 |
| Eco88I | CYCGRG | 1 cut(s) | 909 |
| EcoICRI | GAGCTC | 2 cut(s) | 604, 1481 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 156 |
| EcoRI | GAATTC | 2 cut(s) | 289, 586 |
| EcoRII | CCWGG | 4 cut(s) | 182, 256, 811, 1328 |
| EcoT14I | CCWWGG | 1 cut(s) | 421 |
| EcoT22I | ATGCAT | 1 cut(s) | 1066 |
| EcoT38I | GRGCYC | 2 cut(s) | 606, 1483 |
| ErhI | CCWWGG | 1 cut(s) | 421 |
| Esp3I | CGTCTC | 1 cut(s) | 273 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1221, 1253, 1295, 1327, 1929, 1961 |
| FaqI | GGGAC | 1 cut(s) | 1263 |
| FauNDI | CATATG | 3 cut(s) | 69, 1006, 1543 |
| Fnu4HI | GCNGC | 2 cut(s) | 276, 1815 |
| FokI | GGATG | 5 cut(s) | 477, 536, 710, 1073, 1109 |
| FriOI | GRGCYC | 2 cut(s) | 606, 1483 |
| Fsp4HI | GCNGC | 2 cut(s) | 276, 1815 |
| FspBI | CTAG | 6 cut(s) | 852, 987, 1265, 1527, 1689, 1898 |
| GlaI | GCGC | 3 cut(s) | 274, 1505, 2028 |
| GluI | GCNGC | 2 cut(s) | 276, 1815 |
| GsuI | CTGGAG | 1 cut(s) | 702 |
| HaeII | RGCGCY | 1 cut(s) | 1507 |
| HaeIII | GGCC | 1 cut(s) | 1700 |
| HhaI | GCGC | 3 cut(s) | 275, 1506, 2029 |
| Hin6I | GCGC | 3 cut(s) | 273, 1504, 2027 |
| HinP1I | GCGC | 3 cut(s) | 273, 1504, 2027 |
| HincII | GTYRAC | 1 cut(s) | 1611 |
| HindII | GTYRAC | 1 cut(s) | 1611 |
| HphI | GGTGA | 5 cut(s) | 118, 152, 172, 425, 1307 |
| Hpy166II | GTNNAC | 7 cut(s) | 433, 449, 845, 984, 1188, 1298, 1611 |
| Hpy188III | TCNNGA | 7 cut(s) | 230, 704, 719, 727, 1279, 1373, 1457 |
| Hpy8I | GTNNAC | 7 cut(s) | 433, 449, 845, 984, 1188, 1298, 1611 |
| HpyAV | CCTTC | 6 cut(s) | 371, 1081, 1156, 1279, 1334, 1972 |
| HpyCH4III | ACNGT | 2 cut(s) | 267, 1192 |
| HpyCH4IV | ACGT | 2 cut(s) | 1368, 1759 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 779, 1261, 1583, 2007 |
| HpySE526I | ACGT | 2 cut(s) | 1368, 1759 |
| HspAI | GCGC | 3 cut(s) | 273, 1504, 2027 |
| KpnI | GGTACC | 1 cut(s) | 1469 |
| LguI | GCTCTTC | 3 cut(s) | 579, 594, 1932 |
| LmnI | GCTCC | 2 cut(s) | 260, 721 |
| Lsp1109I | GCAGC | 1 cut(s) | 1826 |
| LweI | GCATC | 3 cut(s) | 1051, 1564, 1891 |
| MaeI | CTAG | 6 cut(s) | 852, 987, 1265, 1527, 1689, 1898 |
| MaeII | ACGT | 2 cut(s) | 1368, 1759 |
| MaeIII | GTNAC | 7 cut(s) | 124, 514, 526, 891, 1619, 1648, 1802 |
| MflI | RGATCY | 2 cut(s) | 673, 1072 |
| MhlI | GDGCHC | 3 cut(s) | 265, 606, 1483 |
| MluCI | AATT | 7 cut(s) | 289, 586, 973, 1317, 1642, 1733, 1908 |
| MlyI | GAGTC | 3 cut(s) | 686, 878, 1985 |
| MmeI | TCCRAC | 2 cut(s) | 1380, 1955 |
| Mph1103I | ATGCAT | 1 cut(s) | 1066 |
| MseI | TTAA | 5 cut(s) | 8, 191, 354, 390, 1302 |
| MspCI | CTTAAG | 1 cut(s) | 1301 |
| MspR9I | CCNGG | 4 cut(s) | 184, 258, 813, 1330 |
| MvaI | CCWGG | 4 cut(s) | 184, 258, 813, 1330 |
| MvnI | CGCG | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 779, 1261, 1583, 2007 |
| NcoI | CCATGG | 1 cut(s) | 421 |
| NdeI | CATATG | 3 cut(s) | 69, 1006, 1543 |
| NheI | GCTAGC | 1 cut(s) | 1264 |
| NlaIV | GGNNCC | 5 cut(s) | 58, 169, 675, 1074, 1467 |
| NmeAIII | GCCGAG | 1 cut(s) | 1726 |
| NmuCI | GTSAC | 3 cut(s) | 124, 514, 1802 |
| NsiI | ATGCAT | 1 cut(s) | 1066 |
| NspI | RCATGY | 3 cut(s) | 447, 755, 1865 |
| PaeR7I | CTCGAG | 1 cut(s) | 909 |
| PciI | ACATGT | 1 cut(s) | 443 |
| PciSI | GCTCTTC | 3 cut(s) | 579, 594, 1932 |
| PfeI | GAWTC | 9 cut(s) | 50, 626, 1010, 1021, 1144, 1219, 1344, 1435, 1834 |
| PkrI | GCNGC | 2 cut(s) | 277, 1816 |
| PleI | GAGTC | 3 cut(s) | 686, 877, 1985 |
| PpsI | GAGTC | 3 cut(s) | 686, 877, 1985 |
| Ppu21I | YACGTR | 1 cut(s) | 1760 |
| PscI | ACATGT | 1 cut(s) | 443 |
| PsiI | TTATAA | 1 cut(s) | 1886 |
| Psp124BI | GAGCTC | 2 cut(s) | 606, 1483 |
| Psp6I | CCWGG | 4 cut(s) | 182, 256, 811, 1328 |
| PspGI | CCWGG | 4 cut(s) | 182, 256, 811, 1328 |
| PspN4I | GGNNCC | 5 cut(s) | 58, 169, 675, 1074, 1467 |
| PspPI | GGNCC | 2 cut(s) | 168, 903 |
| PspXI | VCTCGAGB | 1 cut(s) | 909 |
| PstI | CTGCAG | 1 cut(s) | 1257 |
| PsuI | RGATCY | 2 cut(s) | 673, 1072 |
| SacI | GAGCTC | 2 cut(s) | 606, 1483 |
| SapI | GCTCTTC | 3 cut(s) | 579, 594, 1932 |
| SaqAI | TTAA | 5 cut(s) | 8, 191, 354, 390, 1302 |
| SatI | GCNGC | 2 cut(s) | 276, 1815 |
| Sau96I | GGNCC | 2 cut(s) | 168, 903 |
| ScaI | AGTACT | 4 cut(s) | 509, 856, 1307, 1786 |
| SchI | GAGTC | 3 cut(s) | 686, 878, 1985 |
| ScrFI | CCNGG | 4 cut(s) | 184, 258, 813, 1330 |
| SduI | GDGCHC | 3 cut(s) | 265, 606, 1483 |
| SfaNI | GCATC | 3 cut(s) | 1051, 1564, 1891 |
| SfcI | CTRYAG | 2 cut(s) | 1167, 1253 |
| Sfr274I | CTCGAG | 1 cut(s) | 909 |
| SinI | GGWCC | 2 cut(s) | 168, 903 |
| SlaI | CTCGAG | 1 cut(s) | 909 |
| SmlI | CTYRAG | 2 cut(s) | 909, 1301 |
| SmoI | CTYRAG | 2 cut(s) | 909, 1301 |
| SpeI | ACTAGT | 1 cut(s) | 851 |
| Sse9I | AATT | 7 cut(s) | 289, 586, 973, 1317, 1642, 1733, 1908 |
| SsiI | CCGC | 1 cut(s) | 276 |
| SspI | AATATT | 1 cut(s) | 1594 |
| SspMI | CTAG | 6 cut(s) | 852, 987, 1265, 1527, 1689, 1898 |
| SstI | GAGCTC | 2 cut(s) | 606, 1483 |
| StyD4I | CCNGG | 4 cut(s) | 182, 256, 811, 1328 |
| StyI | CCWWGG | 1 cut(s) | 421 |
| TaaI | ACNGT | 2 cut(s) | 267, 1192 |
| TaiI | ACGT | 2 cut(s) | 1371, 1762 |
| TaqI | TCGA | 4 cut(s) | 910, 1222, 1278, 1477 |
| TaqII | GACCGA | 1 cut(s) | 185 |
| TasI | AATT | 7 cut(s) | 289, 586, 973, 1317, 1642, 1733, 1908 |
| TatI | WGTACW | 5 cut(s) | 507, 854, 1305, 1784, 1840 |
| TauI | GCSGC | 1 cut(s) | 278 |
| TfiI | GAWTC | 9 cut(s) | 50, 626, 1010, 1021, 1144, 1219, 1344, 1435, 1834 |
| Tru1I | TTAA | 5 cut(s) | 8, 191, 354, 390, 1302 |
| Tru9I | TTAA | 5 cut(s) | 8, 191, 354, 390, 1302 |
| TscAI | CASTG | 3 cut(s) | 120, 1221, 1554 |
| TseFI | GTSAC | 3 cut(s) | 124, 514, 1802 |
| TseI | GCWGC | 1 cut(s) | 1814 |
| Tsp45I | GTSAC | 3 cut(s) | 124, 514, 1802 |
| TspDTI | ATGAA | 5 cut(s) | 579, 948, 1023, 1113, 1298 |
| TspGWI | ACGGA | 2 cut(s) | 686, 1737 |
| TspRI | CASTG | 3 cut(s) | 120, 1221, 1554 |
| Vha464I | CTTAAG | 1 cut(s) | 1301 |
| VpaK11BI | GGWCC | 2 cut(s) | 168, 903 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 156 |
| XapI | RAATTY | 2 cut(s) | 289, 586 |
| XceI | RCATGY | 3 cut(s) | 447, 755, 1865 |
| XhoI | CTCGAG | 1 cut(s) | 909 |
| XspI | CTAG | 6 cut(s) | 852, 987, 1265, 1527, 1689, 1898 |
| ZrmI | AGTACT | 4 cut(s) | 509, 856, 1307, 1786 |
| Zsp2I | ATGCAT | 1 cut(s) | 1066 |