Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| gag_pre-integrs | PF13976 | 11 - 64 | 5.3e-07 | GAG-pre-integrase domain |
| rve | PF00665 | 78 - 177 | 1.1e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 251 - 310 | 7.1e-25 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 484 - 726 | 3.5e-78 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1314, 2351 |
| Acc36I | ACCTGC | 1 cut(s) | 2013 |
| Acc65I | GGTACC | 1 cut(s) | 1287 |
| AccB1I | GGYRCC | 1 cut(s) | 1287 |
| AclI | AACGTT | 1 cut(s) | 97 |
| AclWI | GGATC | 5 cut(s) | 791, 1127, 1772, 2884, 2888 |
| AcsI | RAATTY | 4 cut(s) | 64, 617, 1318, 1473 |
| AcvI | CACGTG | 1 cut(s) | 1835 |
| AfaI | GTAC | 5 cut(s) | 526, 1289, 1863, 1944, 2057 |
| AflII | CTTAAG | 1 cut(s) | 2051 |
| AjnI | CCWGG | 2 cut(s) | 221, 1756 |
| Alw21I | GWGCWC | 1 cut(s) | 491 |
| Alw26I | GTCTC | 8 cut(s) | 558, 630, 735, 892, 1543, 1776, 2624, 2664 |
| AlwI | GGATC | 5 cut(s) | 791, 1127, 1772, 2884, 2888 |
| AoxI | GGCC | 2 cut(s) | 1679, 2092 |
| ApeKI | GCWGC | 4 cut(s) | 750, 1999, 2188, 2681 |
| ApoI | RAATTY | 4 cut(s) | 64, 617, 1318, 1473 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1709, 1921 |
| Asp718I | GGTACC | 1 cut(s) | 1287 |
| AspA2I | CCTAGG | 1 cut(s) | 823 |
| AspS9I | GGNCC | 2 cut(s) | 266, 1244 |
| AsuHPI | GGTGA | 3 cut(s) | 1733, 1988, 2818 |
| AsuII | TTCGAA | 2 cut(s) | 1915, 2017 |
| AvaII | GGWCC | 2 cut(s) | 266, 1244 |
| AvrII | CCTAGG | 1 cut(s) | 823 |
| BanI | GGYRCC | 1 cut(s) | 1287 |
| BanII | GRGCYC | 1 cut(s) | 491 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1200, 1232 |
| BauI | CACGAG | 1 cut(s) | 1572 |
| BbrPI | CACGTG | 1 cut(s) | 1835 |
| Bbv12I | GWGCWC | 1 cut(s) | 491 |
| BbvI | GCAGC | 4 cut(s) | 737, 1986, 2175, 2668 |
| BccI | CCATC | 6 cut(s) | 118, 281, 1258, 1500, 1529, 1817 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 742, 776, 1178, 1212 |
| BciT130I | CCWGG | 2 cut(s) | 223, 1758 |
| BciVI | GTATCC | 1 cut(s) | 2426 |
| BclI | TGATCA | 1 cut(s) | 2806 |
| BcoDI | GTCTC | 8 cut(s) | 558, 630, 735, 892, 1543, 1776, 2624, 2664 |
| BfaI | CTAG | 9 cut(s) | 57, 195, 228, 513, 669, 801, 824, 873, 2556 |
| BfmI | CTRYAG | 2 cut(s) | 1206, 1494 |
| BfrI | CTTAAG | 1 cut(s) | 2051 |
| BfuAI | ACCTGC | 1 cut(s) | 2013 |
| BfuI | GTATCC | 1 cut(s) | 2426 |
| BglII | AGATCT | 1 cut(s) | 1737 |
| BisI | GCNGC | 4 cut(s) | 751, 2000, 2189, 2682 |
| BlnI | CCTAGG | 1 cut(s) | 823 |
| BlsI | GCNGC | 4 cut(s) | 752, 2001, 2190, 2683 |
| BmcAI | AGTACT | 1 cut(s) | 2057 |
| Bme1390I | CCNGG | 2 cut(s) | 223, 1758 |
| Bme18I | GGWCC | 2 cut(s) | 266, 1244 |
| BmgT120I | GGNCC | 2 cut(s) | 266, 1244 |
| BmiI | GGNNCC | 3 cut(s) | 267, 1289, 2639 |
| BmrFI | CCNGG | 2 cut(s) | 223, 1758 |
| BmsI | GCATC | 3 cut(s) | 100, 514, 2128 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2197, 2229, 2201, 2233 |
| BpmI | CTGGAG | 1 cut(s) | 1035 |
| Bpu14I | TTCGAA | 2 cut(s) | 1915, 2017 |
| BpuEI | CTTGAG | 5 cut(s) | 57, 296, 505, 612, 1244 |
| BsaAI | YACGTR | 1 cut(s) | 1835 |
| BsaBI | GATNNNNATC | 4 cut(s) | 81, 832, 1011, 1077 |
| BsaI | GGTCTC | 1 cut(s) | 630 |
| BsaJI | CCNNGG | 4 cut(s) | 42, 222, 823, 891 |
| BsaWI | WCCGGW | 1 cut(s) | 2704 |
| Bse1I | ACTGG | 5 cut(s) | 269, 952, 1037, 1103, 2488 |
| Bse3DI | GCAATG | 3 cut(s) | 1897, 2283, 2691 |
| Bse8I | GATNNNNATC | 4 cut(s) | 81, 832, 1011, 1077 |
| BseBI | CCWGG | 2 cut(s) | 223, 1758 |
| BseDI | CCNNGG | 4 cut(s) | 42, 222, 823, 891 |
| BseGI | GGATG | 5 cut(s) | 106, 218, 379, 901, 1702 |
| BseJI | GATNNNNATC | 4 cut(s) | 81, 832, 1011, 1077 |
| BseMI | GCAATG | 3 cut(s) | 1897, 2283, 2691 |
| BseMII | CTCAG | 4 cut(s) | 105, 444, 1337, 1781 |
| BseNI | ACTGG | 5 cut(s) | 269, 952, 1037, 1103, 2488 |
| BseRI | GAGGAG | 5 cut(s) | 519, 684, 1748, 2163, 2612 |
| BseXI | GCAGC | 4 cut(s) | 737, 1986, 2175, 2668 |
| BsgI | GTGCAG | 3 cut(s) | 736, 2476, 2580 |
| BshFI | GGCC | 2 cut(s) | 1681, 2094 |
| BshNI | GGYRCC | 1 cut(s) | 1287 |
| BsiHKAI | GWGCWC | 1 cut(s) | 491 |
| BsiSI | CCGG | 1 cut(s) | 2705 |
| BsmAI | GTCTC | 8 cut(s) | 558, 630, 735, 892, 1543, 1776, 2624, 2664 |
| BsmI | GAATGC | 1 cut(s) | 250 |
| BsnI | GGCC | 2 cut(s) | 1681, 2094 |
| Bso31I | GGTCTC | 1 cut(s) | 630 |
| Bsp119I | TTCGAA | 2 cut(s) | 1915, 2017 |
| Bsp1286I | GDGCHC | 1 cut(s) | 491 |
| BspANI | GGCC | 2 cut(s) | 1681, 2094 |
| BspCNI | CTCAG | 4 cut(s) | 106, 445, 1338, 1780 |
| BspHI | TCATGA | 4 cut(s) | 1168, 1366, 1774, 2713 |
| BspLI | GGNNCC | 3 cut(s) | 267, 1289, 2639 |
| BspMI | ACCTGC | 1 cut(s) | 2013 |
| BspPI | GGATC | 5 cut(s) | 791, 1127, 1772, 2884, 2888 |
| BspQI | GCTCTTC | 1 cut(s) | 2519 |
| BspT104I | TTCGAA | 2 cut(s) | 1915, 2017 |
| BspT107I | GGYRCC | 1 cut(s) | 1287 |
| BspTI | CTTAAG | 1 cut(s) | 2051 |
| BspTNI | GGTCTC | 1 cut(s) | 630 |
| BsrDI | GCAATG | 3 cut(s) | 1897, 2283, 2691 |
| BsrI | ACTGG | 5 cut(s) | 269, 952, 1037, 1103, 2488 |
| BssECI | CCNNGG | 4 cut(s) | 42, 222, 823, 891 |
| BssSI | CACGAG | 1 cut(s) | 1572 |
| BssT1I | CCWWGG | 3 cut(s) | 42, 823, 891 |
| Bst2BI | CACGAG | 1 cut(s) | 1572 |
| Bst2UI | CCWGG | 2 cut(s) | 223, 1758 |
| Bst4CI | ACNGT | 5 cut(s) | 1066, 1543, 1642, 2542, 2858 |
| Bst6I | CTCTTC | 3 cut(s) | 1725, 1983, 2519 |
| BstAFI | CTTAAG | 1 cut(s) | 2051 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1844 |
| BstBAI | YACGTR | 1 cut(s) | 1835 |
| BstBI | TTCGAA | 2 cut(s) | 1915, 2017 |
| BstC8I | GCNNGC | 6 cut(s) | 681, 1416, 1796, 2167, 2322, 2870 |
| BstDEI | CTNAG | 6 cut(s) | 114, 453, 1346, 1767, 1853, 2642 |
| BstF5I | GGATG | 5 cut(s) | 106, 218, 379, 901, 1702 |
| BstMAI | GTCTC | 8 cut(s) | 558, 630, 735, 892, 1543, 1776, 2624, 2664 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 495, 756, 1337, 1625, 1844, 2307, 2608 |
| BstNI | CCWGG | 2 cut(s) | 223, 1758 |
| BstNSI | RCATGY | 2 cut(s) | 759, 2324 |
| BstSCI | CCNGG | 2 cut(s) | 221, 1756 |
| BstSFI | CTRYAG | 2 cut(s) | 1206, 1494 |
| BstV1I | GCAGC | 4 cut(s) | 737, 1986, 2175, 2668 |
| BstX2I | RGATCY | 1 cut(s) | 1737 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1839 |
| BstYI | RGATCY | 1 cut(s) | 1737 |
| BsuI | GTATCC | 1 cut(s) | 2426 |
| BsuRI | GGCC | 2 cut(s) | 1681, 2094 |
| BtsCI | GGATG | 5 cut(s) | 106, 218, 379, 901, 1702 |
| BtsI | GCAGTG | 3 cut(s) | 639, 2589, 2841 |
| BtsIMutI | CAGTG | 5 cut(s) | 639, 1539, 2436, 2589, 2841 |
| BveI | ACCTGC | 1 cut(s) | 2013 |
| Cac8I | GCNNGC | 6 cut(s) | 681, 1416, 1796, 2167, 2322, 2870 |
| CciI | TCATGA | 4 cut(s) | 1168, 1366, 1774, 2713 |
| Cfr13I | GGNCC | 2 cut(s) | 266, 1244 |
| Csp6I | GTAC | 5 cut(s) | 525, 1288, 1862, 1943, 2056 |
| CviQI | GTAC | 5 cut(s) | 525, 1288, 1862, 1943, 2056 |
| DdeI | CTNAG | 6 cut(s) | 114, 453, 1346, 1767, 1853, 2642 |
| Eam1104I | CTCTTC | 3 cut(s) | 1725, 1983, 2519 |
| EarI | CTCTTC | 3 cut(s) | 1725, 1983, 2519 |
| Ecl136II | GAGCTC | 1 cut(s) | 489 |
| Eco130I | CCWWGG | 3 cut(s) | 42, 823, 891 |
| Eco147I | AGGCCT | 1 cut(s) | 2094 |
| Eco24I | GRGCYC | 1 cut(s) | 491 |
| Eco31I | GGTCTC | 1 cut(s) | 630 |
| Eco47I | GGWCC | 2 cut(s) | 266, 1244 |
| Eco53kI | GAGCTC | 1 cut(s) | 489 |
| Eco72I | CACGTG | 1 cut(s) | 1835 |
| EcoICRI | GAGCTC | 1 cut(s) | 489 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1244 |
| EcoRII | CCWGG | 2 cut(s) | 221, 1756 |
| EcoT14I | CCWWGG | 3 cut(s) | 42, 823, 891 |
| EcoT22I | ATGCAT | 2 cut(s) | 1678, 2322 |
| EcoT38I | GRGCYC | 1 cut(s) | 491 |
| ErhI | CCWWGG | 3 cut(s) | 42, 823, 891 |
| FbaI | TGATCA | 1 cut(s) | 2806 |
| Fnu4HI | GCNGC | 4 cut(s) | 751, 2000, 2189, 2682 |
| FokI | GGATG | 5 cut(s) | 93, 205, 386, 908, 1709 |
| FriOI | GRGCYC | 1 cut(s) | 491 |
| Fsp4HI | GCNGC | 4 cut(s) | 751, 2000, 2189, 2682 |
| FspBI | CTAG | 9 cut(s) | 57, 195, 228, 513, 669, 801, 824, 873, 2556 |
| GluI | GCNGC | 4 cut(s) | 751, 2000, 2189, 2682 |
| GsuI | CTGGAG | 1 cut(s) | 1035 |
| HaeIII | GGCC | 2 cut(s) | 1681, 2094 |
| HapII | CCGG | 1 cut(s) | 2705 |
| HincII | GTYRAC | 1 cut(s) | 2651 |
| HindII | GTYRAC | 1 cut(s) | 2651 |
| HindIII | AAGCTT | 4 cut(s) | 774, 1796, 2252, 2870 |
| HinfI | GANTC | 6 cut(s) | 278, 1898, 2047, 2358, 2441, 2884 |
| HpaII | CCGG | 1 cut(s) | 2705 |
| HphI | GGTGA | 3 cut(s) | 1733, 1988, 2818 |
| Hpy166II | GTNNAC | 1 cut(s) | 2651 |
| Hpy8I | GTNNAC | 1 cut(s) | 2651 |
| HpyAV | CCTTC | 4 cut(s) | 1026, 1483, 2143, 2372 |
| HpyCH4III | ACNGT | 5 cut(s) | 1066, 1543, 1642, 2542, 2858 |
| HpyCH4IV | ACGT | 3 cut(s) | 97, 784, 1834 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 495, 756, 1337, 1625, 1844, 2307, 2608 |
| HpyF3I | CTNAG | 6 cut(s) | 114, 453, 1346, 1767, 1853, 2642 |
| HpySE526I | ACGT | 3 cut(s) | 97, 784, 1834 |
| KpnI | GGTACC | 1 cut(s) | 1291 |
| Ksp22I | TGATCA | 1 cut(s) | 2806 |
| LguI | GCTCTTC | 1 cut(s) | 2519 |
| LmnI | GCTCC | 3 cut(s) | 1054, 1204, 2329 |
| Lsp1109I | GCAGC | 4 cut(s) | 737, 1986, 2175, 2668 |
| LweI | GCATC | 3 cut(s) | 100, 514, 2128 |
| MaeI | CTAG | 9 cut(s) | 57, 195, 228, 513, 669, 801, 824, 873, 2556 |
| MaeII | ACGT | 3 cut(s) | 97, 784, 1834 |
| MflI | RGATCY | 1 cut(s) | 1737 |
| MhlI | GDGCHC | 1 cut(s) | 491 |
| MlyI | GAGTC | 1 cut(s) | 287 |
| MmeI | TCCRAC | 1 cut(s) | 2351 |
| Mph1103I | ATGCAT | 2 cut(s) | 1678, 2322 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1709, 1921 |
| MseI | TTAA | 9 cut(s) | 294, 381, 1443, 1565, 1668, 1820, 2052, 2103, 2196 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1533, 1837, 2399 |
| MspCI | CTTAAG | 1 cut(s) | 2051 |
| MspI | CCGG | 1 cut(s) | 2705 |
| MspR9I | CCNGG | 2 cut(s) | 223, 1758 |
| Mva1269I | GAATGC | 1 cut(s) | 250 |
| MvaI | CCWGG | 2 cut(s) | 223, 1758 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 495, 756, 1337, 1625, 1844, 2307, 2608 |
| NlaIV | GGNNCC | 3 cut(s) | 267, 1289, 2639 |
| NmeAIII | GCCGAG | 1 cut(s) | 574 |
| NmuCI | GTSAC | 5 cut(s) | 474, 1296, 1976, 2669, 2744 |
| NsiI | ATGCAT | 2 cut(s) | 1678, 2322 |
| NspI | RCATGY | 2 cut(s) | 759, 2324 |
| NspV | TTCGAA | 2 cut(s) | 1915, 2017 |
| PaeI | GCATGC | 1 cut(s) | 2324 |
| PagI | TCATGA | 4 cut(s) | 1168, 1366, 1774, 2713 |
| PceI | AGGCCT | 1 cut(s) | 2094 |
| PciSI | GCTCTTC | 1 cut(s) | 2519 |
| PctI | GAATGC | 1 cut(s) | 250 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1709, 1921 |
| PfeI | GAWTC | 5 cut(s) | 1898, 2047, 2358, 2441, 2884 |
| PkrI | GCNGC | 4 cut(s) | 752, 2001, 2190, 2683 |
| PleI | GAGTC | 1 cut(s) | 286 |
| PmaCI | CACGTG | 1 cut(s) | 1835 |
| PmlI | CACGTG | 1 cut(s) | 1835 |
| PpsI | GAGTC | 1 cut(s) | 286 |
| Ppu21I | YACGTR | 1 cut(s) | 1835 |
| PpuMI | RGGWCCY | 1 cut(s) | 1244 |
| PsiI | TTATAA | 2 cut(s) | 1314, 2351 |
| Psp124BI | GAGCTC | 1 cut(s) | 491 |
| Psp1406I | AACGTT | 1 cut(s) | 97 |
| Psp5II | RGGWCCY | 1 cut(s) | 1244 |
| Psp6I | CCWGG | 2 cut(s) | 221, 1756 |
| PspCI | CACGTG | 1 cut(s) | 1835 |
| PspGI | CCWGG | 2 cut(s) | 221, 1756 |
| PspN4I | GGNNCC | 3 cut(s) | 267, 1289, 2639 |
| PspPI | GGNCC | 2 cut(s) | 266, 1244 |
| PspPPI | RGGWCCY | 1 cut(s) | 1244 |
| PsuI | RGATCY | 1 cut(s) | 1737 |
| RsaI | GTAC | 5 cut(s) | 526, 1289, 1863, 1944, 2057 |
| RsaNI | GTAC | 5 cut(s) | 525, 1288, 1862, 1943, 2056 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1533, 1837, 2399 |
| SacI | GAGCTC | 1 cut(s) | 491 |
| SapI | GCTCTTC | 1 cut(s) | 2519 |
| SaqAI | TTAA | 9 cut(s) | 294, 381, 1443, 1565, 1668, 1820, 2052, 2103, 2196 |
| SatI | GCNGC | 4 cut(s) | 751, 2000, 2189, 2682 |
| Sau96I | GGNCC | 2 cut(s) | 266, 1244 |
| ScaI | AGTACT | 1 cut(s) | 2057 |
| SchI | GAGTC | 1 cut(s) | 287 |
| ScrFI | CCNGG | 2 cut(s) | 223, 1758 |
| SduI | GDGCHC | 1 cut(s) | 491 |
| SfaNI | GCATC | 3 cut(s) | 100, 514, 2128 |
| SfcI | CTRYAG | 2 cut(s) | 1206, 1494 |
| SfuI | TTCGAA | 2 cut(s) | 1915, 2017 |
| SinI | GGWCC | 2 cut(s) | 266, 1244 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1533, 1837, 2399 |
| SmlI | CTYRAG | 6 cut(s) | 72, 275, 484, 627, 1259, 2051 |
| SmoI | CTYRAG | 6 cut(s) | 72, 275, 484, 627, 1259, 2051 |
| SphI | GCATGC | 1 cut(s) | 2324 |
| SseBI | AGGCCT | 1 cut(s) | 2094 |
| SspMI | CTAG | 9 cut(s) | 57, 195, 228, 513, 669, 801, 824, 873, 2556 |
| SstI | GAGCTC | 1 cut(s) | 491 |
| StuI | AGGCCT | 1 cut(s) | 2094 |
| StyD4I | CCNGG | 2 cut(s) | 221, 1756 |
| StyI | CCWWGG | 3 cut(s) | 42, 823, 891 |
| TaaI | ACNGT | 5 cut(s) | 1066, 1543, 1642, 2542, 2858 |
| TaiI | ACGT | 3 cut(s) | 100, 787, 1837 |
| TaqI | TCGA | 6 cut(s) | 562, 1188, 1915, 2017, 2275, 2755 |
| TatI | WGTACW | 1 cut(s) | 2055 |
| TfiI | GAWTC | 5 cut(s) | 1898, 2047, 2358, 2441, 2884 |
| Tru1I | TTAA | 9 cut(s) | 294, 381, 1443, 1565, 1668, 1820, 2052, 2103, 2196 |
| Tru9I | TTAA | 9 cut(s) | 294, 381, 1443, 1565, 1668, 1820, 2052, 2103, 2196 |
| TscAI | CASTG | 5 cut(s) | 646, 1546, 2443, 2596, 2848 |
| TseFI | GTSAC | 5 cut(s) | 474, 1296, 1976, 2669, 2744 |
| TseI | GCWGC | 4 cut(s) | 750, 1999, 2188, 2681 |
| Tsp45I | GTSAC | 5 cut(s) | 474, 1296, 1976, 2669, 2744 |
| TspGWI | ACGGA | 1 cut(s) | 1071 |
| TspRI | CASTG | 5 cut(s) | 646, 1546, 2443, 2596, 2848 |
| Vha464I | CTTAAG | 1 cut(s) | 2051 |
| VpaK11BI | GGWCC | 2 cut(s) | 266, 1244 |
| XapI | RAATTY | 4 cut(s) | 64, 617, 1318, 1473 |
| XbaI | TCTAGA | 1 cut(s) | 194 |
| XceI | RCATGY | 2 cut(s) | 759, 2324 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1936 |
| XmaJI | CCTAGG | 1 cut(s) | 823 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1709, 1921 |
| XspI | CTAG | 9 cut(s) | 57, 195, 228, 513, 669, 801, 824, 873, 2556 |
| ZrmI | AGTACT | 1 cut(s) | 2057 |
| Zsp2I | ATGCAT | 2 cut(s) | 1678, 2322 |