Rw5G049920
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
86510581 .. 86511168
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G049920.1

Sequence Viewer

Length: 588 bp
ATGCATCAACCTCGAAAACTTCATATGGAGGCAGCTTTGCGTGTTGTGCGTTATCTCAAAGGTGCACCTGGTCAAGGTTTATTTTTCTCTTCACAGAGTGATCTCAGATTGCGTGCTTATTGTGATTCAGATTGGGCAGGGTGCCCCATTACTAGAAGATCAACCACAGGATATTGTGTTTTTCTTGGTTCTTCGTTGGTTTCATGGAGATCAAAAAGACAGAAAACAGTCTCGCTTTCTTCAGCTGAAGCGGAGTATCGTGCAATGACAAGTGCCTGCTGTGAATTAACGTGGCTTCGATACCTACTCAGAGACTTAGCAATATTACATCAAGAACCCGCCTTGCTATTTTGTGATAACAAGGCAGCGCTACACATTGCAGCGAATCCAGTTTTTCATGAGCGAACTCGTCATATTGAAATGGACTGCCACTACATCAGGGATAAAATCCAAGATGGTTCTGTTGTTACCAAGTTTGTCATTTCTGCTCATCAATTGGCGGATGTCCTCACTAAGGCCTTGGGAAAGGAAATATTCCTTCCTATGATTCGCAAGTTGGGAGTTCGAGATATCCACTCTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

195

Amino Acids

22.15

Weight (kDa)

9.37

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AciI CCGC 3 cut(s) 251, 339, 500
AcuI CTGAAG 2 cut(s) 225, 267
AdeI CACNNNGTG 1 cut(s) 98
AfeI AGCGCT 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 74, 514
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 35, 245
AluI AGCT 2 cut(s) 35, 245
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 235, 306
Alw44I GTGCAC 1 cut(s) 63
Aor51HI AGCGCT 1 cut(s) 369
AoxI GGCC 1 cut(s) 516
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 32, 365, 380
AspLEI GCGC 1 cut(s) 370
BaeGI GKGCMC 2 cut(s) 67, 146
BanI GGYRCC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 44, 377, 392
BccI CCATC 1 cut(s) 449
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 235, 306
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 371
BisI GCNGC 3 cut(s) 33, 366, 381
BlsI GCNGC 3 cut(s) 34, 367, 382
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 519
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 514
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 2 cut(s) 270, 375
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 74, 514
BseMI GCAATG 2 cut(s) 270, 375
BseMII CTCAG 2 cut(s) 118, 322
BseNI ACTGG 1 cut(s) 389
BseSI GKGCMC 2 cut(s) 67, 146
BseXI GCAGC 3 cut(s) 44, 377, 392
BshFI GGCC 1 cut(s) 518
BshNI GGYRCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 74, 514
BsmAI GTCTC 2 cut(s) 235, 306
BsnI GGCC 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 67, 146
Bsp143I GATC 3 cut(s) 100, 158, 209
BspACI CCGC 3 cut(s) 251, 339, 500
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 2 cut(s) 117, 321
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 141
BsrDI GCAATG 2 cut(s) 270, 375
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 3 cut(s) 100, 158, 209
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 114, 277
BstDEI CTNAG 4 cut(s) 104, 308, 316, 513
BstENI CCTNNNNNAGG 2 cut(s) 72, 512
BstF5I GGATG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 3 cut(s) 103, 161, 212
BstMAI GTCTC 2 cut(s) 235, 306
BstMBI GATC 3 cut(s) 100, 158, 209
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSLI GKGCMC 2 cut(s) 67, 146
BstV1I GCAGC 3 cut(s) 44, 377, 392
BsuRI GGCC 1 cut(s) 518
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 114, 277
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 370
CsiI ACCWGGT 1 cut(s) 67
CviAII CATG 2 cut(s) 204, 398
CviJI RGCY 4 cut(s) 35, 245, 295, 518
CviKI_1 RGCY 4 cut(s) 35, 245, 295, 518
DdeI CTNAG 4 cut(s) 104, 308, 316, 513
DpnI GATC 3 cut(s) 102, 160, 211
DpnII GATC 3 cut(s) 100, 158, 209
DraIII CACNNNGTG 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 518
Eco32I GATATC 1 cut(s) 571
Eco47III AGCGCT 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 225, 267
EcoNI CCTNNNNNAGG 2 cut(s) 72, 512
EcoRII CCWGG 1 cut(s) 67
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 519
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 207, 401
FaiI YATR 6 cut(s) 24, 26, 205, 399, 414, 545
FatI CATG 2 cut(s) 203, 397
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 33, 366, 381
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 3 cut(s) 33, 366, 381
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 369
GluI GCNGC 3 cut(s) 33, 366, 381
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 1 cut(s) 518
HhaI GCGC 1 cut(s) 370
Hin1II CATG 2 cut(s) 207, 401
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HinfI GANTC 3 cut(s) 125, 385, 547
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 3 cut(s) 107, 130, 311
Hpy188III TCNNGA 3 cut(s) 332, 398, 566
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 4 cut(s) 4, 65, 263, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 4 cut(s) 104, 308, 316, 513
HpySE526I ACGT 1 cut(s) 290
Hsp92II CATG 2 cut(s) 207, 401
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 3 cut(s) 100, 158, 209
LpnPI CCDG 7 cut(s) 54, 81, 123, 153, 289, 402, 424
Lsp1109I GCAGC 3 cut(s) 44, 377, 392
LweI GCATC 1 cut(s) 13
MabI ACCWGGT 1 cut(s) 67
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 466
MalI GATC 3 cut(s) 102, 160, 211
MboI GATC 3 cut(s) 100, 158, 209
MboII GAAGA 4 cut(s) 81, 168, 183, 231
MfeI CAATTG 1 cut(s) 494
MhlI GDGCHC 2 cut(s) 67, 146
MluCI AATT 2 cut(s) 284, 494
MnlI CCTC 3 cut(s) 21, 22, 518
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeI CATATG 1 cut(s) 24
NdeII GATC 3 cut(s) 100, 158, 209
NlaIII CATG 2 cut(s) 207, 401
NlaIV GGNNCC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 518
PfeI GAWTC 3 cut(s) 125, 385, 547
PkrI GCNGC 3 cut(s) 34, 367, 382
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 3 cut(s) 33, 366, 381
Sau3AI GATC 3 cut(s) 100, 158, 209
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 2 cut(s) 67, 146
SetI ASST 8 cut(s) 13, 37, 64, 70, 79, 247, 293, 306
SexAI ACCWGGT 1 cut(s) 67
SfaNI GCATC 1 cut(s) 13
Sse9I AATT 2 cut(s) 284, 494
SseBI AGGCCT 1 cut(s) 518
SsiI CCGC 3 cut(s) 251, 339, 500
SspI AATATT 2 cut(s) 324, 534
SspMI CTAG 1 cut(s) 153
StuI AGGCCT 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 293
TaqI TCGA 3 cut(s) 13, 298, 565
TasI AATT 2 cut(s) 284, 494
TfiI GAWTC 3 cut(s) 125, 385, 547
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseI GCWGC 3 cut(s) 32, 365, 380
TspDTI ATGAA 3 cut(s) 11, 192, 386
VneI GTGCAC 1 cut(s) 63
XagI CCTNNNNNAGG 2 cut(s) 72, 512
XspI CTAG 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.