Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 73 | 1.7e-14 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 316, 521 |
| AclWI | GGATC | 1 cut(s) | 140 |
| AcsI | RAATTY | 1 cut(s) | 62 |
| AfaI | GTAC | 3 cut(s) | 95, 155, 438 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 431 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 68, 406, 467 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 517 |
| AjnI | CCWGG | 2 cut(s) | 116, 424 |
| AluBI | AGCT | 4 cut(s) | 236, 269, 308, 422 |
| AluI | AGCT | 4 cut(s) | 236, 269, 308, 422 |
| Alw21I | GWGCWC | 1 cut(s) | 271 |
| Alw26I | GTCTC | 1 cut(s) | 170 |
| AlwI | GGATC | 1 cut(s) | 140 |
| Ama87I | CYCGRG | 1 cut(s) | 367 |
| ApeKI | GCWGC | 1 cut(s) | 389 |
| ApoI | RAATTY | 1 cut(s) | 62 |
| AspLEI | GCGC | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 2 cut(s) | 95, 358 |
| AvaI | CYCGRG | 1 cut(s) | 367 |
| BanII | GRGCYC | 1 cut(s) | 271 |
| Bbv12I | GWGCWC | 1 cut(s) | 271 |
| BbvI | GCAGC | 1 cut(s) | 376 |
| BccI | CCATC | 1 cut(s) | 25 |
| BciT130I | CCWGG | 2 cut(s) | 118, 426 |
| BciVI | GTATCC | 1 cut(s) | 252 |
| BcoDI | GTCTC | 1 cut(s) | 170 |
| BfoI | RGCGCY | 1 cut(s) | 295 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 252 |
| BisI | GCNGC | 1 cut(s) | 390 |
| BlsI | GCNGC | 1 cut(s) | 391 |
| BmcAI | AGTACT | 2 cut(s) | 95, 438 |
| Bme1390I | CCNGG | 2 cut(s) | 118, 426 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 517 |
| BmeT110I | CYCGRG | 1 cut(s) | 367 |
| BmiI | GGNNCC | 1 cut(s) | 255 |
| BmrFI | CCNGG | 2 cut(s) | 118, 426 |
| BmsI | GCATC | 2 cut(s) | 376, 475 |
| BpmI | CTGGAG | 1 cut(s) | 408 |
| BsaJI | CCNNGG | 1 cut(s) | 117 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 431 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| Bse3DI | GCAATG | 1 cut(s) | 22 |
| BseBI | CCWGG | 2 cut(s) | 118, 426 |
| BseDI | CCNNGG | 1 cut(s) | 117 |
| BseGI | GGATG | 1 cut(s) | 391 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BseMI | GCAATG | 1 cut(s) | 22 |
| BseMII | CTCAG | 1 cut(s) | 228 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 376 |
| BsiHKAI | GWGCWC | 1 cut(s) | 271 |
| BsiHKCI | CYCGRG | 1 cut(s) | 367 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BsmAI | GTCTC | 1 cut(s) | 170 |
| BsoBI | CYCGRG | 1 cut(s) | 367 |
| Bsp1286I | GDGCHC | 1 cut(s) | 271 |
| Bsp143I | GATC | 3 cut(s) | 132, 247, 262 |
| BspCNI | CTCAG | 1 cut(s) | 229 |
| BspLI | GGNNCC | 1 cut(s) | 255 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrDI | GCAATG | 1 cut(s) | 22 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 117 |
| BssMI | GATC | 3 cut(s) | 132, 247, 262 |
| Bst2UI | CCWGG | 2 cut(s) | 118, 426 |
| Bst4CI | ACNGT | 3 cut(s) | 25, 51, 441 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 271 |
| BstDEI | CTNAG | 2 cut(s) | 100, 237 |
| BstF5I | GGATG | 1 cut(s) | 391 |
| BstH2I | RGCGCY | 1 cut(s) | 295 |
| BstHHI | GCGC | 1 cut(s) | 294 |
| BstKTI | GATC | 3 cut(s) | 135, 250, 265 |
| BstMAI | GTCTC | 1 cut(s) | 170 |
| BstMBI | GATC | 3 cut(s) | 132, 247, 262 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 494 |
| BstNI | CCWGG | 2 cut(s) | 118, 426 |
| BstNSI | RCATGY | 1 cut(s) | 567 |
| BstSCI | CCNGG | 2 cut(s) | 116, 424 |
| BstV1I | GCAGC | 1 cut(s) | 376 |
| BstX2I | RGATCY | 1 cut(s) | 132 |
| BstYI | RGATCY | 1 cut(s) | 132 |
| BsuI | GTATCC | 1 cut(s) | 252 |
| BtsCI | GGATG | 1 cut(s) | 391 |
| BtsIMutI | CAGTG | 1 cut(s) | 9 |
| Cac8I | GCNNGC | 1 cut(s) | 271 |
| CfoI | GCGC | 1 cut(s) | 294 |
| Csp6I | GTAC | 3 cut(s) | 94, 154, 437 |
| CviAII | CATG | 3 cut(s) | 358, 382, 564 |
| CviJI | RGCY | 8 cut(s) | 56, 116, 236, 269, 308, 422, 477, 497 |
| CviKI_1 | RGCY | 8 cut(s) | 56, 116, 236, 269, 308, 422, 477, 497 |
| CviQI | GTAC | 3 cut(s) | 94, 154, 437 |
| DdeI | CTNAG | 2 cut(s) | 100, 237 |
| DpnI | GATC | 3 cut(s) | 134, 249, 264 |
| DpnII | GATC | 3 cut(s) | 132, 247, 262 |
| DriI | GACNNNNNGTC | 1 cut(s) | 517 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 517 |
| Ecl136II | GAGCTC | 1 cut(s) | 269 |
| Eco24I | GRGCYC | 1 cut(s) | 271 |
| Eco53kI | GAGCTC | 1 cut(s) | 269 |
| Eco88I | CYCGRG | 1 cut(s) | 367 |
| EcoICRI | GAGCTC | 1 cut(s) | 269 |
| EcoRII | CCWGG | 2 cut(s) | 116, 424 |
| EcoT38I | GRGCYC | 1 cut(s) | 271 |
| FaeI | CATG | 3 cut(s) | 361, 385, 567 |
| FaiI | YATR | 8 cut(s) | 312, 331, 333, 359, 363, 383, 395, 565 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 83, 115 |
| FatI | CATG | 3 cut(s) | 357, 381, 563 |
| FauNDI | CATATG | 1 cut(s) | 331 |
| FblI | GTMKAC | 2 cut(s) | 316, 521 |
| Fnu4HI | GCNGC | 1 cut(s) | 390 |
| FokI | GGATG | 1 cut(s) | 398 |
| FriOI | GRGCYC | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 1 cut(s) | 390 |
| GlaI | GCGC | 1 cut(s) | 293 |
| GluI | GCNGC | 1 cut(s) | 390 |
| GsuI | CTGGAG | 1 cut(s) | 408 |
| HaeII | RGCGCY | 1 cut(s) | 295 |
| HhaI | GCGC | 1 cut(s) | 294 |
| Hin1II | CATG | 3 cut(s) | 361, 385, 567 |
| Hin6I | GCGC | 1 cut(s) | 292 |
| HinP1I | GCGC | 1 cut(s) | 292 |
| HincII | GTYRAC | 1 cut(s) | 522 |
| HindII | GTYRAC | 1 cut(s) | 522 |
| HinfI | GANTC | 3 cut(s) | 223, 349, 376 |
| HphI | GGTGA | 2 cut(s) | 95, 358 |
| Hpy166II | GTNNAC | 3 cut(s) | 86, 317, 522 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 279 |
| Hpy188III | TCNNGA | 3 cut(s) | 161, 245, 464 |
| Hpy8I | GTNNAC | 3 cut(s) | 86, 317, 522 |
| HpyAV | CCTTC | 3 cut(s) | 67, 122, 423 |
| HpyCH4III | ACNGT | 3 cut(s) | 25, 51, 441 |
| HpyCH4IV | ACGT | 1 cut(s) | 156 |
| HpyCH4V | TGCA | 5 cut(s) | 195, 329, 335, 488, 567 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 494 |
| HpyF3I | CTNAG | 2 cut(s) | 100, 237 |
| HpySE526I | ACGT | 1 cut(s) | 156 |
| Hsp92II | CATG | 3 cut(s) | 361, 385, 567 |
| HspAI | GCGC | 1 cut(s) | 292 |
| Kzo9I | GATC | 3 cut(s) | 132, 247, 262 |
| LmnI | GCTCC | 1 cut(s) | 427 |
| Lsp1109I | GCAGC | 1 cut(s) | 376 |
| LweI | GCATC | 2 cut(s) | 376, 475 |
| MaeII | ACGT | 1 cut(s) | 156 |
| MaeIII | GTNAC | 3 cut(s) | 377, 530, 559 |
| MalI | GATC | 3 cut(s) | 134, 249, 264 |
| MboI | GATC | 3 cut(s) | 132, 247, 262 |
| MflI | RGATCY | 1 cut(s) | 132 |
| MhlI | GDGCHC | 1 cut(s) | 271 |
| MluCI | AATT | 3 cut(s) | 62, 105, 553 |
| MlyI | GAGTC | 2 cut(s) | 358, 385 |
| MmeI | TCCRAC | 1 cut(s) | 168 |
| MnlI | CCTC | 7 cut(s) | 67, 103, 141, 273, 390, 510, 542 |
| MseI | TTAA | 2 cut(s) | 90, 413 |
| MslI | CAYNNNNRTG | 2 cut(s) | 384, 456 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 2 cut(s) | 118, 426 |
| MvaI | CCWGG | 2 cut(s) | 118, 426 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 494 |
| NdeI | CATATG | 1 cut(s) | 331 |
| NdeII | GATC | 3 cut(s) | 132, 247, 262 |
| NlaIII | CATG | 3 cut(s) | 361, 385, 567 |
| NlaIV | GGNNCC | 1 cut(s) | 255 |
| NmuCI | GTSAC | 1 cut(s) | 377 |
| NspI | RCATGY | 1 cut(s) | 567 |
| PfeI | GAWTC | 1 cut(s) | 223 |
| PfoI | TCCNGGA | 1 cut(s) | 424 |
| PkrI | GCNGC | 1 cut(s) | 391 |
| PleI | GAGTC | 2 cut(s) | 357, 384 |
| PpsI | GAGTC | 2 cut(s) | 357, 384 |
| Psp124BI | GAGCTC | 1 cut(s) | 271 |
| Psp6I | CCWGG | 2 cut(s) | 116, 424 |
| PspGI | CCWGG | 2 cut(s) | 116, 424 |
| PspN4I | GGNNCC | 1 cut(s) | 255 |
| PsuI | RGATCY | 1 cut(s) | 132 |
| RsaI | GTAC | 3 cut(s) | 95, 155, 438 |
| RsaNI | GTAC | 3 cut(s) | 94, 154, 437 |
| RseI | CAYNNNNRTG | 2 cut(s) | 384, 456 |
| SacI | GAGCTC | 1 cut(s) | 271 |
| SalI | GTCGAC | 1 cut(s) | 520 |
| SaqAI | TTAA | 2 cut(s) | 90, 413 |
| SatI | GCNGC | 1 cut(s) | 390 |
| Sau3AI | GATC | 3 cut(s) | 132, 247, 262 |
| ScaI | AGTACT | 2 cut(s) | 95, 438 |
| SchI | GAGTC | 2 cut(s) | 358, 385 |
| ScrFI | CCNGG | 2 cut(s) | 118, 426 |
| SduI | GDGCHC | 1 cut(s) | 271 |
| SfaNI | GCATC | 2 cut(s) | 376, 475 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 384, 456 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 3 cut(s) | 62, 105, 553 |
| SspI | AATATT | 1 cut(s) | 505 |
| SstI | GAGCTC | 1 cut(s) | 271 |
| StyD4I | CCNGG | 2 cut(s) | 116, 424 |
| TaaI | ACNGT | 3 cut(s) | 25, 51, 441 |
| TaiI | ACGT | 1 cut(s) | 159 |
| TaqI | TCGA | 2 cut(s) | 265, 521 |
| TasI | AATT | 3 cut(s) | 62, 105, 553 |
| TatI | WGTACW | 2 cut(s) | 93, 436 |
| TfiI | GAWTC | 1 cut(s) | 223 |
| Tru1I | TTAA | 2 cut(s) | 90, 413 |
| Tru9I | TTAA | 2 cut(s) | 90, 413 |
| TscAI | CASTG | 1 cut(s) | 16 |
| TseFI | GTSAC | 1 cut(s) | 377 |
| TseI | GCWGC | 1 cut(s) | 389 |
| Tsp45I | GTSAC | 1 cut(s) | 377 |
| TspDTI | ATGAA | 2 cut(s) | 86, 346 |
| TspRI | CASTG | 1 cut(s) | 16 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XapI | RAATTY | 1 cut(s) | 62 |
| XceI | RCATGY | 1 cut(s) | 567 |
| XmiI | GTMKAC | 2 cut(s) | 316, 521 |
| ZrmI | AGTACT | 2 cut(s) | 95, 438 |