Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 1 - 50 | 3.8e-07 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 416 |
| AccI | GTMKAC | 1 cut(s) | 610 |
| AclWI | GGATC | 4 cut(s) | 9, 22, 167, 290 |
| AcsI | RAATTY | 4 cut(s) | 63, 366, 573, 734 |
| AfaI | GTAC | 3 cut(s) | 186, 532, 681 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 362 |
| AflII | CTTAAG | 1 cut(s) | 584 |
| AgsI | TTSAA | 5 cut(s) | 160, 346, 401, 450, 707 |
| AjnI | CCWGG | 2 cut(s) | 298, 355 |
| AleI | CACNNNNGTG | 1 cut(s) | 393 |
| AluBI | AGCT | 5 cut(s) | 122, 137, 163, 589, 653 |
| AluI | AGCT | 5 cut(s) | 122, 137, 163, 589, 653 |
| Alw26I | GTCTC | 1 cut(s) | 78 |
| AlwI | GGATC | 4 cut(s) | 9, 22, 167, 290 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 1 cut(s) | 653 |
| ApoI | RAATTY | 4 cut(s) | 63, 366, 573, 734 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 55 |
| AspS9I | GGNCC | 2 cut(s) | 7, 253 |
| AsuHPI | GGTGA | 1 cut(s) | 182 |
| AvaII | GGWCC | 2 cut(s) | 7, 253 |
| BamHI | GGATCC | 1 cut(s) | 14 |
| BauI | CACGAG | 1 cut(s) | 657 |
| BbvI | GCAGC | 1 cut(s) | 640 |
| BceAI | ACGGC | 1 cut(s) | 207 |
| BciT130I | CCWGG | 2 cut(s) | 300, 357 |
| BclI | TGATCA | 1 cut(s) | 619 |
| BcoDI | GTCTC | 1 cut(s) | 78 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BfrI | CTTAAG | 1 cut(s) | 584 |
| BfuAI | ACCTGC | 1 cut(s) | 416 |
| BisI | GCNGC | 1 cut(s) | 654 |
| BlsI | GCNGC | 1 cut(s) | 655 |
| Bme1390I | CCNGG | 2 cut(s) | 300, 357 |
| Bme18I | GGWCC | 2 cut(s) | 7, 253 |
| BmgT120I | GGNCC | 2 cut(s) | 7, 253 |
| BmiI | GGNNCC | 2 cut(s) | 16, 430 |
| BmrFI | CCNGG | 2 cut(s) | 300, 357 |
| BmrI | ACTGGG | 1 cut(s) | 430 |
| BmsI | GCATC | 1 cut(s) | 403 |
| BmuI | ACTGGG | 1 cut(s) | 430 |
| BpmI | CTGGAG | 1 cut(s) | 321 |
| BpuEI | CTTGAG | 1 cut(s) | 289 |
| BsaBI | GATNNNNATC | 1 cut(s) | 177 |
| BsaJI | CCNNGG | 1 cut(s) | 10 |
| BsaWI | WCCGGW | 2 cut(s) | 250, 676 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 362 |
| Bse1I | ACTGG | 4 cut(s) | 131, 188, 425, 528 |
| Bse3DI | GCAATG | 1 cut(s) | 663 |
| Bse8I | GATNNNNATC | 1 cut(s) | 177 |
| BseBI | CCWGG | 2 cut(s) | 300, 357 |
| BseDI | CCNNGG | 1 cut(s) | 10 |
| BseJI | GATNNNNATC | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 362 |
| BseMI | GCAATG | 1 cut(s) | 663 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BseNI | ACTGG | 4 cut(s) | 131, 188, 425, 528 |
| BseXI | GCAGC | 1 cut(s) | 640 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BsiSI | CCGG | 2 cut(s) | 251, 677 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 362 |
| BsmAI | GTCTC | 1 cut(s) | 78 |
| BsmI | GAATGC | 1 cut(s) | 322 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp143I | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspLI | GGNNCC | 2 cut(s) | 16, 430 |
| BspMI | ACCTGC | 1 cut(s) | 416 |
| BspPI | GGATC | 4 cut(s) | 9, 22, 167, 290 |
| BspTI | CTTAAG | 1 cut(s) | 584 |
| BsrDI | GCAATG | 1 cut(s) | 663 |
| BsrI | ACTGG | 4 cut(s) | 131, 188, 425, 528 |
| BssECI | CCNNGG | 1 cut(s) | 10 |
| BssMI | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| BssNAI | GTATAC | 1 cut(s) | 611 |
| BssSI | CACGAG | 1 cut(s) | 657 |
| BssT1I | CCWWGG | 1 cut(s) | 10 |
| Bst1107I | GTATAC | 1 cut(s) | 611 |
| Bst2BI | CACGAG | 1 cut(s) | 657 |
| Bst2UI | CCWGG | 2 cut(s) | 300, 357 |
| Bst6I | CTCTTC | 1 cut(s) | 736 |
| BstAFI | CTTAAG | 1 cut(s) | 584 |
| BstDEI | CTNAG | 2 cut(s) | 75, 164 |
| BstKTI | GATC | 5 cut(s) | 17, 175, 298, 622, 715 |
| BstMAI | GTCTC | 1 cut(s) | 78 |
| BstMBI | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 422 |
| BstNI | CCWGG | 2 cut(s) | 300, 357 |
| BstNSI | RCATGY | 3 cut(s) | 118, 292, 704 |
| BstSCI | CCNGG | 2 cut(s) | 298, 355 |
| BstV1I | GCAGC | 1 cut(s) | 640 |
| BstX2I | RGATCY | 1 cut(s) | 14 |
| BstYI | RGATCY | 1 cut(s) | 14 |
| BstZ17I | GTATAC | 1 cut(s) | 611 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BveI | ACCTGC | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 2 cut(s) | 7, 253 |
| Csp6I | GTAC | 3 cut(s) | 185, 531, 680 |
| CviAII | CATG | 8 cut(s) | 115, 289, 293, 492, 617, 628, 686, 701 |
| CviQI | GTAC | 3 cut(s) | 185, 531, 680 |
| DdeI | CTNAG | 2 cut(s) | 75, 164 |
| DpnI | GATC | 5 cut(s) | 16, 174, 297, 621, 714 |
| DpnII | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| Eam1104I | CTCTTC | 1 cut(s) | 736 |
| EarI | CTCTTC | 1 cut(s) | 736 |
| Eco130I | CCWWGG | 1 cut(s) | 10 |
| Eco47I | GGWCC | 2 cut(s) | 7, 253 |
| EcoO109I | RGGNCCY | 1 cut(s) | 7 |
| EcoRII | CCWGG | 2 cut(s) | 298, 355 |
| EcoT14I | CCWWGG | 1 cut(s) | 10 |
| EcoT22I | ATGCAT | 1 cut(s) | 294 |
| ErhI | CCWWGG | 1 cut(s) | 10 |
| FaeI | CATG | 8 cut(s) | 118, 292, 296, 495, 620, 631, 689, 704 |
| FatI | CATG | 8 cut(s) | 114, 288, 292, 491, 616, 627, 685, 700 |
| FauNDI | CATATG | 1 cut(s) | 312 |
| FbaI | TGATCA | 1 cut(s) | 619 |
| FblI | GTMKAC | 1 cut(s) | 610 |
| Fnu4HI | GCNGC | 1 cut(s) | 654 |
| Fsp4HI | GCNGC | 1 cut(s) | 654 |
| FspBI | CTAG | 1 cut(s) | 111 |
| GluI | GCNGC | 1 cut(s) | 654 |
| GsuI | CTGGAG | 1 cut(s) | 321 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HapII | CCGG | 2 cut(s) | 251, 677 |
| Hin1II | CATG | 8 cut(s) | 118, 292, 296, 495, 620, 631, 689, 704 |
| HincII | GTYRAC | 1 cut(s) | 193 |
| HindII | GTYRAC | 1 cut(s) | 193 |
| HindIII | AAGCTT | 2 cut(s) | 161, 587 |
| HinfI | GANTC | 1 cut(s) | 280 |
| HpaII | CCGG | 2 cut(s) | 251, 677 |
| HphI | GGTGA | 1 cut(s) | 182 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 611 |
| Hpy188I | TCNGA | 1 cut(s) | 78 |
| Hpy188III | TCNNGA | 3 cut(s) | 48, 60, 659 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 611 |
| HpyAV | CCTTC | 3 cut(s) | 146, 340, 395 |
| HpyCH4IV | ACGT | 2 cut(s) | 445, 467 |
| HpyCH4V | TGCA | 4 cut(s) | 103, 292, 416, 668 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 422 |
| HpyF3I | CTNAG | 2 cut(s) | 75, 164 |
| HpySE526I | ACGT | 2 cut(s) | 445, 467 |
| Hsp92II | CATG | 8 cut(s) | 118, 292, 296, 495, 620, 631, 689, 704 |
| Ksp22I | TGATCA | 1 cut(s) | 619 |
| Kzo9I | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| Lsp1109I | GCAGC | 1 cut(s) | 640 |
| LweI | GCATC | 1 cut(s) | 403 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MaeII | ACGT | 2 cut(s) | 445, 467 |
| MaeIII | GTNAC | 4 cut(s) | 458, 479, 487, 659 |
| MalI | GATC | 5 cut(s) | 16, 174, 297, 621, 714 |
| MboI | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| MboII | GAAGA | 4 cut(s) | 161, 213, 712, 753 |
| MflI | RGATCY | 1 cut(s) | 14 |
| MluCI | AATT | 6 cut(s) | 63, 366, 573, 632, 734, 751 |
| MlyI | GAGTC | 1 cut(s) | 289 |
| MnlI | CCTC | 4 cut(s) | 34, 72, 372, 542 |
| Mph1103I | ATGCAT | 1 cut(s) | 294 |
| MroXI | GAANNNNTTC | 1 cut(s) | 55 |
| MseI | TTAA | 3 cut(s) | 375, 585, 596 |
| MslI | CAYNNNNRTG | 2 cut(s) | 315, 393 |
| MspCI | CTTAAG | 1 cut(s) | 584 |
| MspI | CCGG | 2 cut(s) | 251, 677 |
| MspR9I | CCNGG | 2 cut(s) | 300, 357 |
| Mva1269I | GAATGC | 1 cut(s) | 322 |
| MvaI | CCWGG | 2 cut(s) | 300, 357 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 422 |
| NdeI | CATATG | 1 cut(s) | 312 |
| NdeII | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| NlaIII | CATG | 8 cut(s) | 118, 292, 296, 495, 620, 631, 689, 704 |
| NlaIV | GGNNCC | 2 cut(s) | 16, 430 |
| NmuCI | GTSAC | 1 cut(s) | 659 |
| NsiI | ATGCAT | 1 cut(s) | 294 |
| NspI | RCATGY | 3 cut(s) | 118, 292, 704 |
| OliI | CACNNNNGTG | 1 cut(s) | 393 |
| PctI | GAATGC | 1 cut(s) | 322 |
| PdmI | GAANNNNTTC | 1 cut(s) | 55 |
| PfoI | TCCNGGA | 1 cut(s) | 298 |
| PkrI | GCNGC | 1 cut(s) | 655 |
| PleI | GAGTC | 1 cut(s) | 288 |
| PpsI | GAGTC | 1 cut(s) | 288 |
| PpuMI | RGGWCCY | 1 cut(s) | 7 |
| Psp5II | RGGWCCY | 1 cut(s) | 7 |
| Psp6I | CCWGG | 2 cut(s) | 298, 355 |
| PspGI | CCWGG | 2 cut(s) | 298, 355 |
| PspN4I | GGNNCC | 2 cut(s) | 16, 430 |
| PspPI | GGNCC | 2 cut(s) | 7, 253 |
| PspPPI | RGGWCCY | 1 cut(s) | 7 |
| PsuI | RGATCY | 1 cut(s) | 14 |
| RsaI | GTAC | 3 cut(s) | 186, 532, 681 |
| RsaNI | GTAC | 3 cut(s) | 185, 531, 680 |
| RseI | CAYNNNNRTG | 2 cut(s) | 315, 393 |
| SaqAI | TTAA | 3 cut(s) | 375, 585, 596 |
| SatI | GCNGC | 1 cut(s) | 654 |
| Sau3AI | GATC | 5 cut(s) | 14, 172, 295, 619, 712 |
| Sau96I | GGNCC | 2 cut(s) | 7, 253 |
| SchI | GAGTC | 1 cut(s) | 289 |
| ScrFI | CCNGG | 2 cut(s) | 300, 357 |
| SfaNI | GCATC | 1 cut(s) | 403 |
| SinI | GGWCC | 2 cut(s) | 7, 253 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 315, 393 |
| SmlI | CTYRAG | 2 cut(s) | 268, 584 |
| SmoI | CTYRAG | 2 cut(s) | 268, 584 |
| Sse9I | AATT | 6 cut(s) | 63, 366, 573, 632, 734, 751 |
| SspI | AATATT | 2 cut(s) | 26, 333 |
| SspMI | CTAG | 1 cut(s) | 111 |
| StyD4I | CCNGG | 2 cut(s) | 298, 355 |
| StyI | CCWWGG | 1 cut(s) | 10 |
| TaiI | ACGT | 2 cut(s) | 448, 470 |
| TaqI | TCGA | 1 cut(s) | 47 |
| TasI | AATT | 6 cut(s) | 63, 366, 573, 632, 734, 751 |
| TatI | WGTACW | 1 cut(s) | 530 |
| Tru1I | TTAA | 3 cut(s) | 375, 585, 596 |
| Tru9I | TTAA | 3 cut(s) | 375, 585, 596 |
| TseFI | GTSAC | 1 cut(s) | 659 |
| TseI | GCWGC | 1 cut(s) | 653 |
| Tsp45I | GTSAC | 1 cut(s) | 659 |
| TspDTI | ATGAA | 4 cut(s) | 17, 329, 644, 712 |
| Vha464I | CTTAAG | 1 cut(s) | 584 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 253 |
| XapI | RAATTY | 4 cut(s) | 63, 366, 573, 734 |
| XceI | RCATGY | 3 cut(s) | 118, 292, 704 |
| XmiI | GTMKAC | 1 cut(s) | 610 |
| XmnI | GAANNNNTTC | 1 cut(s) | 55 |
| XspI | CTAG | 1 cut(s) | 111 |
| Zsp2I | ATGCAT | 1 cut(s) | 294 |