Rw4G008970

Reverse transcriptase (RNA-dependent DNA polymerase)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
20072117 .. 20075463
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008970.1

Sequence Viewer

Length: 2031 bp
ATGGCTTTAAAGGTTTCTCACTTTGTTGGTTCTGATACATGGATTATTGATTCTGGTGCCTCTGACCATATGACTTATGATAAATCATTTTTTACTGAGTTGTCTCCCCCACCAGTGTCCTATGTCACCAATGCCAATGGTGAGGCTTTTCCTGTGTTAGGGTCAGGGTCCGATCTTCTCACCAGGGAGTTAATCGGTCGGGGGTATCTGAGGGGCAGATTGTTCCATCTGGATCAGACATACGCAGGGGAGAAACCAGGAGCACCGTCTCGCGCCGCTTTGACTTTGAATTCTGATAAGCTAACTTTTCAAACTTTTCGTACTCTTGTTCAAACACAATATCATAGCACCATTAAAGTCCTTCGTTCTGACAATGGGGGAGAATATGTTAATCATGTTTTCCAAGAGTTTTTCAAAGCCCATGGGATTGTTCACCAAACCACATGTCCACAAACACCAGAGCAAAATGGTAAAGGGTACAAGTGCTATCATCCACCAACCAGAAAGTACTATGTCACTATGGATGTTACTTTCTTTGAGGACATGAGTTATTTTTCCTCCTCAGATACAGCTCTTCAGGGGGAGAATTCATTTTTTGAAGAGCTATATCATGGAGAGGGGGAGGAATCAGAAGGCGAAGGAGAAGTCGCACAGACAGGAGGTATTTTGACGGATCCAGTTGAGAACAGTGACTCATCAGAAGTAGAAGCTCCAAACATTCAGACACCAGTTTCAATCATTGAACATGCAGTTGAAGACACAACTGCCCCTACTGTCATCACTTCTACCCCTGACCCACAACTTGCTGGTGCTGAAGATCACTCAGTTGAGGTATGTCCACCCACTAATACTGGCAATAGTGAGTCTAATGTTGAGCAATATGTGTTACCAAGTAGGACTACTCGAGGTCAATCAGCCAAAAGATATGAACCTACTCTTACTGCCAAGTCAAAATACCCAGTAGCCAATTATATGTCCACTAGGAGGTTGTCTAAGTCATATGAATCGTTTGTGAATCAAATATCTGCTGTATCAGTACCTAACAAAGTGCAGGATGCATTGGGGGATCCAAAGTGGAGGAAGGCAATGGATGAAGAGATGGAGGCGTTGCAGAAGAACAATACTTGGCAACTTGTGCCTCCACCACAAGGCAAGCAAGCTGTAGGCTGTCGTTGGGTTTTTACTGTGAAACATAATGCAGATGGATCAGTGAATCGATACAAAGCAAGCCTTGTAGCAAAGGGACTGCAGAGACAGCTAGCCTCTGAGTTCGAGATGAAGGACTTGGGTGAACTTAAGTACTTCTTAGGAATTGAGGTAGCCAGGGGGAGAGAAGGAATCTACTTGTGCCAGAGGAAGTATGTTCTTGACTTGTTAACAGAGACAGGTTTGTTGGATTGCAGACCCATTGATACTCCTATTGAGCAGAATCATTGTTTAGCTGAGTATCCAGATCAGGTACCTACTGATCGAGCTCGCTATCAGAGGTTAGTTGGGCGCTTGATTTATTTGGCTCATACTAGACCAGATGTTGCATATGCAGTGAGTGTGGTCTGTGGCTTTACAGATGCAGATTGGGCTGGAAATATTACAGACAGGAGGTCAACATCAGGTTACTTTACCTTTGTGGGAGGTAATTTGGTTACATGGAAGAGTAAGAAACAGAAAGTTGTGGCACGATCTAGTGCTGAGGCCGAGTATAGAGGTATGGCTCACGGAGTGTGTGAATTGCTGTGGCTGAGAAATCTGGTACGTGATCTGGGTTTCAAACTCAAAAGTACTATGCAGTTGTATTGTGACAACAAGGCAGCCATTGACATATCACAGAATCCAGTACAACATGATCGTACTAAGCATGTGGAAGTTGATCGTCACTTTATAAAGGAGAAGCTAGATGCCAAAATTATTAGTTTTCCTTTTGTTCCGACGGAAGAGCAACTTGCAGATATACTTACCAAAGGAGTTTCTAGGAAGGCGTTTTATGACTCACTAAGCAAGTTGGGCATGGTCGATGTGTATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

676

Amino Acids

75.57

Weight (kDa)

5.89

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 14 - 57 9.8e-09 Pol polyprotein, beta-barrel domain
rve PF00665 98 - 153 5.1e-07 Integrase core domain
SH3_retrovirus PF25597 155 - 188 5.5e-07 Retroviral polymerase SH3-like domain
RVT_2 PF07727 373 - 417 6.3e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 415 - 475 7.7e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1880
Acc65I GGTACC 1 cut(s) 1459
AccB1I GGYRCC 2 cut(s) 56, 1459
AccII CGCG 1 cut(s) 273
AciI CCGC 1 cut(s) 276
AclWI GGATC 6 cut(s) 240, 668, 681, 1061, 1074, 1213
AcsI RAATTY 2 cut(s) 289, 586
AcuI CTGAAG 2 cut(s) 560, 834
AdeI CACNNNGTG 1 cut(s) 1720
AfiI CCNNNNNNNGG 3 cut(s) 158, 984, 1148
AflII CTTAAG 1 cut(s) 1295
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 9 cut(s) 289, 311, 332, 415, 599, 735, 743, 755, 1768
AhdI GACNNNNNGTC 1 cut(s) 1600
AjnI CCWGG 3 cut(s) 182, 256, 1322
AluBI AGCT 9 cut(s) 301, 572, 604, 710, 1160, 1258, 1442, 1475, 1891
AluI AGCT 9 cut(s) 301, 572, 604, 710, 1160, 1258, 1442, 1475, 1891
Alw21I GWGCWC 2 cut(s) 265, 1477
Alw26I GTCTC 4 cut(s) 108, 273, 1246, 1376
AlwI GGATC 6 cut(s) 240, 668, 681, 1061, 1074, 1213
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 1 cut(s) 1692
ApeKI GCWGC 1 cut(s) 1808
ApoI RAATTY 2 cut(s) 289, 586
ArsI GACNNNNNNTTYG 4 cut(s) 430, 462, 630, 662
Asp718I GGTACC 1 cut(s) 1459
AspLEI GCGC 3 cut(s) 275, 1500, 2023
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 5 cut(s) 118, 152, 172, 425, 1301
AsuNHI GCTAGC 1 cut(s) 1258
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 1 cut(s) 168
BamHI GGATCC 2 cut(s) 673, 1066
BanI GGYRCC 2 cut(s) 56, 1459
BanII GRGCYC 1 cut(s) 1477
BbsI GAAGAC 1 cut(s) 762
Bbv12I GWGCWC 2 cut(s) 265, 1477
BbvCI CCTCAGC 1 cut(s) 1689
BbvI GCAGC 1 cut(s) 1820
BccI CCATC 3 cut(s) 234, 1093, 1196
BcgI CGANNNNNNTGC 1 cut(s) 2000
BciT130I CCWGG 3 cut(s) 184, 258, 1324
BciVI GTATCC 1 cut(s) 1458
BcoDI GTCTC 4 cut(s) 108, 273, 1246, 1376
BfaI CTAG 6 cut(s) 981, 1259, 1521, 1683, 1892, 1968
BfmI CTRYAG 2 cut(s) 1161, 1247
BfoI RGCGCY 1 cut(s) 1501
BfrI CTTAAG 1 cut(s) 1295
BfuI GTATCC 1 cut(s) 1458
BisI GCNGC 2 cut(s) 276, 1809
BlsI GCNGC 2 cut(s) 277, 1810
BmcAI AGTACT 3 cut(s) 509, 1301, 1780
Bme1390I CCNGG 3 cut(s) 184, 258, 1324
Bme18I GGWCC 1 cut(s) 168
BmeRI GACNNNNNGTC 1 cut(s) 1600
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 5 cut(s) 58, 169, 675, 1068, 1461
BmrFI CCNGG 3 cut(s) 184, 258, 1324
BmrI ACTGGG 1 cut(s) 953
BmsI GCATC 3 cut(s) 1045, 1558, 1885
BmtI GCTAGC 1 cut(s) 1262
BmuI ACTGGG 1 cut(s) 953
BpiI GAAGAC 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 1689
Bsa29I ATCGAT 1 cut(s) 1216
BsaAI YACGTR 1 cut(s) 1754
BsaJI CCNNGG 3 cut(s) 183, 421, 1323
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 984, 1148
Bse1I ACTGG 6 cut(s) 113, 677, 728, 856, 959, 1832
Bse3DI GCAATG 1 cut(s) 1092
BseBI CCWGG 3 cut(s) 184, 258, 1324
BseCI ATCGAT 1 cut(s) 1216
BseDI CCNNGG 3 cut(s) 183, 421, 1323
BseGI GGATG 4 cut(s) 490, 529, 1060, 1096
BseLI CCNNNNNNNGG 3 cut(s) 158, 984, 1148
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 8 cut(s) 87, 200, 576, 837, 1257, 1434, 1680, 1730
BseNI ACTGG 6 cut(s) 113, 677, 728, 856, 959, 1832
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 1 cut(s) 1820
BsgI GTGCAG 1 cut(s) 1070
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 1694
BshNI GGYRCC 2 cut(s) 56, 1459
BshVI ATCGAT 1 cut(s) 1216
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 265, 1477
BsiHKCI CYCGRG 1 cut(s) 903
BslFI GGGAC 1 cut(s) 1257
BslI CCNNNNNNNGG 3 cut(s) 158, 984, 1148
BsmAI GTCTC 4 cut(s) 108, 273, 1246, 1376
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 1257
BsnI GGCC 1 cut(s) 1694
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 2 cut(s) 265, 1477
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 1 cut(s) 276
BspANI GGCC 1 cut(s) 1694
BspCNI CTCAG 8 cut(s) 88, 201, 575, 836, 1258, 1435, 1681, 1731
BspDI ATCGAT 1 cut(s) 1216
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 58, 169, 675, 1068, 1461
BspMAI CTGCAG 1 cut(s) 1251
BspOI GCTAGC 1 cut(s) 1262
BspPI GGATC 6 cut(s) 240, 668, 681, 1061, 1074, 1213
BspQI GCTCTTC 3 cut(s) 579, 594, 1926
BspT107I GGYRCC 2 cut(s) 56, 1459
BspTI CTTAAG 1 cut(s) 1295
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 6 cut(s) 113, 677, 728, 856, 959, 1832
BssECI CCNNGG 3 cut(s) 183, 421, 1323
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 3 cut(s) 184, 258, 1324
Bst4CI ACNGT 4 cut(s) 267, 689, 775, 1186
Bst6I CTCTTC 5 cut(s) 579, 594, 1089, 1646, 1926
BstAFI CTTAAG 1 cut(s) 1295
BstAPI GCANNNNNTGC 1 cut(s) 1135
BstBAI YACGTR 1 cut(s) 1754
BstC8I GCNNGC 5 cut(s) 1154, 1158, 1228, 1260, 1477
BstDSI CCRYGG 1 cut(s) 421
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 4 cut(s) 490, 529, 1060, 1096
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 1501
BstHHI GCGC 3 cut(s) 275, 1500, 2023
BstMAI GTCTC 4 cut(s) 108, 273, 1246, 1376
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 4 cut(s) 1135, 1255, 1577, 2001
BstNI CCWGG 3 cut(s) 184, 258, 1324
BstNSI RCATGY 3 cut(s) 447, 749, 1859
BstSCI CCNGG 3 cut(s) 182, 256, 1322
BstSFI CTRYAG 2 cut(s) 1161, 1247
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 1820
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 2 cut(s) 673, 1066
BstYI RGATCY 2 cut(s) 673, 1066
Bsu15I ATCGAT 1 cut(s) 1216
BsuI GTATCC 1 cut(s) 1458
BsuRI GGCC 1 cut(s) 1694
BsuTUI ATCGAT 1 cut(s) 1216
BtgI CCRYGG 1 cut(s) 421
BtsCI GGATG 4 cut(s) 490, 529, 1060, 1096
BtsI GCAGTG 1 cut(s) 1548
BtsIMutI CAGTG 4 cut(s) 120, 694, 1215, 1548
Cac8I GCNNGC 5 cut(s) 1154, 1158, 1228, 1260, 1477
CfoI GCGC 3 cut(s) 275, 1500, 2023
Cfr13I GGNCC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 1216
DraI TTTAAA 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 1720
DriI GACNNNNNGTC 1 cut(s) 1600
Eam1104I CTCTTC 5 cut(s) 579, 594, 1089, 1646, 1926
Eam1105I GACNNNNNGTC 1 cut(s) 1600
EarI CTCTTC 5 cut(s) 579, 594, 1089, 1646, 1926
Ecl136II GAGCTC 1 cut(s) 1475
Eco130I CCWWGG 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 1477
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 1475
Eco57I CTGAAG 2 cut(s) 560, 834
Eco88I CYCGRG 1 cut(s) 903
EcoICRI GAGCTC 1 cut(s) 1475
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoRI GAATTC 2 cut(s) 289, 586
EcoRII CCWGG 3 cut(s) 182, 256, 1322
EcoT14I CCWWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 1060
EcoT38I GRGCYC 1 cut(s) 1477
ErhI CCWWGG 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 273
FalI AAGNNNNNCTT 6 cut(s) 1215, 1247, 1289, 1321, 1923, 1955
FaqI GGGAC 1 cut(s) 1257
FauNDI CATATG 3 cut(s) 69, 1000, 1537
Fnu4HI GCNGC 2 cut(s) 276, 1809
FokI GGATG 4 cut(s) 477, 536, 1067, 1103
FriOI GRGCYC 1 cut(s) 1477
Fsp4HI GCNGC 2 cut(s) 276, 1809
FspBI CTAG 6 cut(s) 981, 1259, 1521, 1683, 1892, 1968
GlaI GCGC 3 cut(s) 274, 1499, 2022
GluI GCNGC 2 cut(s) 276, 1809
HaeII RGCGCY 1 cut(s) 1501
HaeIII GGCC 1 cut(s) 1694
HhaI GCGC 3 cut(s) 275, 1500, 2023
Hin6I GCGC 3 cut(s) 273, 1498, 2021
HinP1I GCGC 3 cut(s) 273, 1498, 2021
HincII GTYRAC 2 cut(s) 1377, 1605
HindII GTYRAC 2 cut(s) 1377, 1605
HpaI GTTAAC 1 cut(s) 1377
HphI GGTGA 5 cut(s) 118, 152, 172, 425, 1301
Hpy166II GTNNAC 7 cut(s) 433, 449, 839, 978, 1292, 1377, 1605
Hpy188III TCNNGA 4 cut(s) 230, 1273, 1367, 1451
Hpy8I GTNNAC 7 cut(s) 433, 449, 839, 978, 1292, 1377, 1605
Hpy99I CGWCG 1 cut(s) 1930
HpyAV CCTTC 7 cut(s) 371, 626, 632, 1075, 1273, 1328, 1966
HpyCH4III ACNGT 4 cut(s) 267, 689, 775, 1186
HpyCH4IV ACGT 1 cut(s) 1753
HpyF10VI GCNNNNNNNGC 4 cut(s) 1135, 1255, 1577, 2001
HpySE526I ACGT 1 cut(s) 1753
HspAI GCGC 3 cut(s) 273, 1498, 2021
KpnI GGTACC 1 cut(s) 1463
KspAI GTTAAC 1 cut(s) 1377
LguI GCTCTTC 3 cut(s) 579, 594, 1926
LmnI GCTCC 2 cut(s) 260, 715
Lsp1109I GCAGC 1 cut(s) 1820
LweI GCATC 3 cut(s) 1045, 1558, 1885
MaeI CTAG 6 cut(s) 981, 1259, 1521, 1683, 1892, 1968
MaeII ACGT 1 cut(s) 1753
MaeIII GTNAC 9 cut(s) 124, 514, 526, 689, 885, 1613, 1642, 1796, 1871
MboII GAAGA 9 cut(s) 167, 566, 611, 767, 827, 1106, 1126, 1663, 1943
MflI RGATCY 2 cut(s) 673, 1066
MhlI GDGCHC 2 cut(s) 265, 1477
MluCI AATT 7 cut(s) 289, 586, 967, 1311, 1636, 1727, 1902
MlyI GAGTC 3 cut(s) 686, 872, 1979
MmeI TCCRAC 2 cut(s) 1374, 1949
Mph1103I ATGCAT 1 cut(s) 1060
MseI TTAA 6 cut(s) 8, 191, 354, 390, 1296, 1376
MspCI CTTAAG 1 cut(s) 1295
MspR9I CCNGG 3 cut(s) 184, 258, 1324
MvaI CCWGG 3 cut(s) 184, 258, 1324
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 1135, 1255, 1577, 2001
NcoI CCATGG 1 cut(s) 421
NdeI CATATG 3 cut(s) 69, 1000, 1537
NheI GCTAGC 1 cut(s) 1258
NlaIV GGNNCC 5 cut(s) 58, 169, 675, 1068, 1461
NmeAIII GCCGAG 1 cut(s) 1720
NmuCI GTSAC 5 cut(s) 124, 514, 689, 1796, 1871
NsiI ATGCAT 1 cut(s) 1060
NspI RCATGY 3 cut(s) 447, 749, 1859
PaeR7I CTCGAG 1 cut(s) 903
PciI ACATGT 1 cut(s) 443
PciSI GCTCTTC 3 cut(s) 579, 594, 1926
PfeI GAWTC 8 cut(s) 50, 626, 1004, 1015, 1213, 1338, 1429, 1828
PkrI GCNGC 2 cut(s) 277, 1810
PleI GAGTC 3 cut(s) 686, 871, 1979
PpsI GAGTC 3 cut(s) 686, 871, 1979
Ppu21I YACGTR 1 cut(s) 1754
PscI ACATGT 1 cut(s) 443
PsiI TTATAA 1 cut(s) 1880
Psp124BI GAGCTC 1 cut(s) 1477
Psp6I CCWGG 3 cut(s) 182, 256, 1322
PspGI CCWGG 3 cut(s) 182, 256, 1322
PspN4I GGNNCC 5 cut(s) 58, 169, 675, 1068, 1461
PspPI GGNCC 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 903
PstI CTGCAG 1 cut(s) 1251
PsuI RGATCY 2 cut(s) 673, 1066
SacI GAGCTC 1 cut(s) 1477
SapI GCTCTTC 3 cut(s) 579, 594, 1926
SaqAI TTAA 6 cut(s) 8, 191, 354, 390, 1296, 1376
SatI GCNGC 2 cut(s) 276, 1809
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 3 cut(s) 509, 1301, 1780
SchI GAGTC 3 cut(s) 686, 872, 1979
ScrFI CCNGG 3 cut(s) 184, 258, 1324
SduI GDGCHC 2 cut(s) 265, 1477
SfaNI GCATC 3 cut(s) 1045, 1558, 1885
SfcI CTRYAG 2 cut(s) 1161, 1247
Sfr274I CTCGAG 1 cut(s) 903
SinI GGWCC 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 903
SmlI CTYRAG 2 cut(s) 903, 1295
SmoI CTYRAG 2 cut(s) 903, 1295
Sse9I AATT 7 cut(s) 289, 586, 967, 1311, 1636, 1727, 1902
SsiI CCGC 1 cut(s) 276
SspI AATATT 1 cut(s) 1588
SspMI CTAG 6 cut(s) 981, 1259, 1521, 1683, 1892, 1968
SstI GAGCTC 1 cut(s) 1477
StyD4I CCNGG 3 cut(s) 182, 256, 1322
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 4 cut(s) 267, 689, 775, 1186
TaiI ACGT 1 cut(s) 1756
TaqI TCGA 5 cut(s) 904, 1216, 1272, 1471, 2010
TaqII GACCGA 1 cut(s) 185
TasI AATT 7 cut(s) 289, 586, 967, 1311, 1636, 1727, 1902
TatI WGTACW 4 cut(s) 507, 1299, 1778, 1834
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 8 cut(s) 50, 626, 1004, 1015, 1213, 1338, 1429, 1828
Tru1I TTAA 6 cut(s) 8, 191, 354, 390, 1296, 1376
Tru9I TTAA 6 cut(s) 8, 191, 354, 390, 1296, 1376
TscAI CASTG 4 cut(s) 120, 694, 1215, 1548
TseFI GTSAC 5 cut(s) 124, 514, 689, 1796, 1871
TseI GCWGC 1 cut(s) 1808
Tsp45I GTSAC 5 cut(s) 124, 514, 689, 1796, 1871
TspDTI ATGAA 5 cut(s) 579, 942, 1017, 1107, 1292
TspGWI ACGGA 3 cut(s) 686, 1731, 1943
TspRI CASTG 4 cut(s) 120, 694, 1215, 1548
Vha464I CTTAAG 1 cut(s) 1295
VpaK11BI GGWCC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 2 cut(s) 289, 586
XceI RCATGY 3 cut(s) 447, 749, 1859
XhoI CTCGAG 1 cut(s) 903
XspI CTAG 6 cut(s) 981, 1259, 1521, 1683, 1892, 1968
ZrmI AGTACT 3 cut(s) 509, 1301, 1780
Zsp2I ATGCAT 1 cut(s) 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.