FvH4_4g08311

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000071
Physical Location & Seq
Forward (+)
8207098 .. 8209599
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08311.t1

Sequence Viewer

Length: 1485 bp
ATGCGGTCAGAATTACAAGCACTCGAAGAGAATGGCACCTGGACACTTACTCCTCTTCCAGCCGGCAAGACCCTAATTGATTGTCGCTGGGTTTATAAAATCAAGCACAAGTCTGATGGTTCGATTGAGCGGTATAAGGCACGATTAGTGGCAAAAGGGTTTACCCAAATGACAGGTGTTGATTATCAAGACACATTTTCACCTACGGCGAAAATTGTATCTGTCCGGTGTTTATTAGCTTTGGCAGCAGCTCGTGGCTGGTCACTTCATCAGCTGGATGTCAATAACGCCTTTTTACACGGCAATCTTGATGAGGAGATATATATGTCTCCTCCACCAGGGCTCCGGAAACAGGGGGAGGAACACCTGGTATGTCGACTTCATAAGTCGTTATATGGCCTAAAGCAAGCATCTCGGCAGTGGTTTGCTAAATTCTCTGAGGCTATCCGATCTGCTGGTTATGTGCAATCCAAAGCAGATTATTCTTTGTTCACCAGGAAACAAGGCAAGTCCTTTACAGCTCTCTTGATTTACGTTGATGATATTTTAATTACTGGAAATGATCCATTGAGTATTGTTGCACTGAAGAATTTCCTTCATACTCATTTTCGTATTAAAGATTTGGGAGATTTGAAGTATTTTCTTGGCATTGAGGTGTCTGCTTCTAAGAATGGGATTTTTATTTCCCAATGTAAATATGCCTTAGAAATTGTCAAAGATTCAGGGTTGCCTGGTGCAGCTCCTGTTGATACTCCTATGGAAAAAGGGTTGAAATTGTCTGATAAAAGTGAGTTCTTAAAGGATCATGCTCGCTATAGAAGGCTTATTGGGAGATTAATATACGTTACTGTTTCTAGACCGGACATCACATATTCAGTACATGTGCTTAGTAGATTCATGCATCAGCCTCGCAAGATTCATATGGAAGCAGCTTTGCGTATTGTTCGATACATTAAGAATGCACCTGGTCAAGGTTTATTTTTCTCTTGTAAAAGTGATTTCAGATTGCGTTCTTTTTGTGATTCAGATTGGGCAGGATGTCCAATTACTCGGAGATCTACCACAGGTTATTGTGTCTTTCTTGGTCCATCATTAATTTCGTGGAAATCAAAAAGGCAAAAGACAGTTTCACTCTCTTCGGCTGAAGCCGAATACCGCGCAATGACTGGCGCTTGTTGTGAGCTTACATGGCTTCGGTATCTACTCAAAGATTTAGGAGTATTGCATCCGGAACCTGCCTTCCTATATTGTGATAATAGAGCAGCGCTGCACATTGCAGCCAATCCTGTTTTCCATGAGCGAACTCGGCACATTGAAATGGATTGTCACTATATCAGGGACAAGATCCAAGATGGTTATGTTGTGACAAGGTTCGTAGGTTCTACACATCAATTGGCAGACGTCTTCACCAAAGCTTTGGGAAAGGAGCTTTTCATTTCTATGGTTCGCAAGTTGGGAGTTCAGGACATTCATTCTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

495

Amino Acids

56.01

Weight (kDa)

9.41

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 255 2.9e-73 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AatII GACGTC 1 cut(s) 1404
Acc36I ACCTGC 1 cut(s) 1243
AccB1I GGYRCC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 376
AccII CGCG 1 cut(s) 1158
AccIII TCCGGA 2 cut(s) 345, 1228
AciI CCGC 3 cut(s) 4, 130, 1156
AclWI GGATC 3 cut(s) 557, 810, 1339
AcsI RAATTY 2 cut(s) 431, 589
AcuI CTGAAG 2 cut(s) 605, 1164
AcyI GRCGYC 1 cut(s) 1401
AfaI GTAC 1 cut(s) 879
AfeI AGCGCT 1 cut(s) 1266
AfiI CCNNNNNNNGG 3 cut(s) 338, 352, 971
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 3 cut(s) 634, 772, 1316
AjnI CCWGG 6 cut(s) 38, 337, 366, 494, 730, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 1274, 1306
AloI GAACNNNNNNTCC 2 cut(s) 1224, 1256
AluBI AGCT 9 cut(s) 239, 251, 274, 521, 740, 932, 1183, 1415, 1429
AluI AGCT 9 cut(s) 239, 251, 274, 521, 740, 932, 1183, 1415, 1429
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 3 cut(s) 557, 810, 1339
AlwNI CAGNNNCTG 1 cut(s) 743
Aor13HI TCCGGA 2 cut(s) 345, 1228
Aor51HI AGCGCT 1 cut(s) 1266
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 7 cut(s) 245, 248, 737, 929, 1262, 1267, 1277
ApoI RAATTY 2 cut(s) 431, 589
AseI ATTAAT 2 cut(s) 836, 1094
Asp700I GAANNNNTTC 1 cut(s) 590
AspLEI GCGC 3 cut(s) 1160, 1172, 1267
AspS9I GGNCC 1 cut(s) 1085
AsuHPI GGTGA 3 cut(s) 192, 484, 1399
AvaII GGWCC 1 cut(s) 1085
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BauI CACGAG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 1396
BbvI GCAGC 7 cut(s) 257, 260, 749, 941, 1254, 1274, 1289
BccI CCATC 3 cut(s) 110, 1096, 1346
BceAI ACGGC 2 cut(s) 222, 316
BcgI CGANNNNNNTGC 4 cut(s) 395, 429, 890, 924
BciT130I CCWGG 6 cut(s) 40, 339, 368, 496, 732, 966
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 1 cut(s) 814
BfoI RGCGCY 2 cut(s) 1173, 1268
BfuAI ACCTGC 1 cut(s) 1243
BglII AGATCT 1 cut(s) 1055
BisI GCNGC 7 cut(s) 246, 249, 738, 930, 1263, 1268, 1278
BlsI GCNGC 7 cut(s) 247, 250, 739, 931, 1264, 1269, 1279
Bme1390I CCNGG 6 cut(s) 40, 339, 368, 496, 732, 966
Bme18I GGWCC 1 cut(s) 1085
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 3 cut(s) 37, 344, 1233
BmrFI CCNGG 6 cut(s) 40, 339, 368, 496, 732, 966
BmsI GCATC 3 cut(s) 419, 910, 1234
BpiI GAAGAC 1 cut(s) 1396
BsaHI GRCGYC 1 cut(s) 1401
BsaJI CCNNGG 1 cut(s) 338
BsaWI WCCGGW 4 cut(s) 225, 345, 859, 1228
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 327, 357
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 352, 971
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 559, 1171
Bse3DI GCAATG 2 cut(s) 1167, 1272
BseAI TCCGGA 2 cut(s) 345, 1228
BseBI CCWGG 6 cut(s) 40, 339, 368, 496, 732, 966
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 3 cut(s) 283, 1043, 1225
BseLI CCNNNNNNNGG 3 cut(s) 338, 352, 971
BseMI GCAATG 2 cut(s) 1167, 1272
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 559, 1171
BseRI GAGGAG 3 cut(s) 42, 321, 329
BseXI GCAGC 7 cut(s) 257, 260, 749, 941, 1254, 1274, 1289
BseYI CCCAGC 1 cut(s) 87
BsgI GTGCAG 2 cut(s) 756, 1253
Bsh1236I CGCG 1 cut(s) 1158
BshFI GGCC 1 cut(s) 399
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 5 cut(s) 63, 226, 346, 860, 1229
BslFI GGGAC 1 cut(s) 1352
BslI CCNNNNNNNGG 3 cut(s) 338, 352, 971
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 1352
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 345
Bsp13I TCCGGA 2 cut(s) 345, 1228
Bsp143I GATC 5 cut(s) 449, 562, 802, 1055, 1344
BspACI CCGC 3 cut(s) 4, 130, 1156
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 430
BspEI TCCGGA 2 cut(s) 345, 1228
BspFNI CGCG 1 cut(s) 1158
BspLI GGNNCC 3 cut(s) 37, 344, 1233
BspMI ACCTGC 1 cut(s) 1243
BspPI GGATC 3 cut(s) 557, 810, 1339
BspT107I GGYRCC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 130
BsrDI GCAATG 2 cut(s) 1167, 1272
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 2 cut(s) 559, 1171
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 5 cut(s) 449, 562, 802, 1055, 1344
BssNI GRCGYC 1 cut(s) 1401
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 6 cut(s) 40, 339, 368, 496, 732, 966
Bst4CI ACNGT 2 cut(s) 850, 1126
Bst6I CTCTTC 3 cut(s) 21, 60, 1141
BstACI GRCGYC 1 cut(s) 1401
BstC8I GCNNGC 3 cut(s) 64, 408, 811
BstDEI CTNAG 4 cut(s) 438, 666, 703, 887
BstENI CCTNNNNNAGG 2 cut(s) 336, 969
BstF5I GGATG 3 cut(s) 283, 1043, 1225
BstFNI CGCG 1 cut(s) 1158
BstH2I RGCGCY 2 cut(s) 1173, 1268
BstHHI GCGC 3 cut(s) 1160, 1172, 1267
BstKTI GATC 5 cut(s) 452, 565, 805, 1058, 1347
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 5 cut(s) 449, 562, 802, 1055, 1344
BstMWI GCNNNNNNNGC 3 cut(s) 245, 1189, 1306
BstNI CCWGG 6 cut(s) 40, 339, 368, 496, 732, 966
BstNSI RCATGY 1 cut(s) 884
BstSCI CCNGG 6 cut(s) 38, 337, 366, 494, 730, 964
BstSFI CTRYAG 1 cut(s) 814
BstUI CGCG 1 cut(s) 1158
BstV1I GCAGC 7 cut(s) 257, 260, 749, 941, 1254, 1274, 1289
BstV2I GAAGAC 1 cut(s) 1396
BstX2I RGATCY 2 cut(s) 1055, 1344
BstXI CCANNNNNNTGG 1 cut(s) 1417
BstYI RGATCY 2 cut(s) 1055, 1344
BsuRI GGCC 1 cut(s) 399
BtsCI GGATG 3 cut(s) 283, 1043, 1225
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 425, 581
BveI ACCTGC 1 cut(s) 1243
Cac8I GCNNGC 3 cut(s) 64, 408, 811
CaiI CAGNNNCTG 1 cut(s) 743
CfoI GCGC 3 cut(s) 1160, 1172, 1267
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 1085
CsiI ACCWGGT 2 cut(s) 366, 964
Csp6I GTAC 1 cut(s) 878
CviAII CATG 5 cut(s) 806, 881, 898, 1188, 1295
CviQI GTAC 1 cut(s) 878
DdeI CTNAG 4 cut(s) 438, 666, 703, 887
DpnI GATC 5 cut(s) 451, 564, 804, 1057, 1346
DpnII GATC 5 cut(s) 449, 562, 802, 1055, 1344
Eam1104I CTCTTC 3 cut(s) 21, 60, 1141
EarI CTCTTC 3 cut(s) 21, 60, 1141
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 1085
Eco47III AGCGCT 1 cut(s) 1266
Eco57I CTGAAG 2 cut(s) 605, 1164
EcoNI CCTNNNNNAGG 2 cut(s) 336, 969
EcoRII CCWGG 6 cut(s) 38, 337, 366, 494, 730, 964
EcoT22I ATGCAT 1 cut(s) 903
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 5 cut(s) 809, 884, 901, 1191, 1298
FaqI GGGAC 1 cut(s) 1352
FatI CATG 5 cut(s) 805, 880, 897, 1187, 1294
FauNDI CATATG 1 cut(s) 921
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 7 cut(s) 246, 249, 738, 930, 1263, 1268, 1278
FokI GGATG 3 cut(s) 290, 1050, 1212
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 7 cut(s) 246, 249, 738, 930, 1263, 1268, 1278
FspBI CTAG 1 cut(s) 855
GlaI GCGC 3 cut(s) 1159, 1171, 1266
GluI GCNGC 7 cut(s) 246, 249, 738, 930, 1263, 1268, 1278
GsaI CCCAGC 1 cut(s) 91
HaeII RGCGCY 2 cut(s) 1173, 1268
HaeIII GGCC 1 cut(s) 399
HapII CCGG 5 cut(s) 63, 226, 346, 860, 1229
HhaI GCGC 3 cut(s) 1160, 1172, 1267
Hin1I GRCGYC 1 cut(s) 1401
Hin1II CATG 5 cut(s) 809, 884, 901, 1191, 1298
Hin6I GCGC 3 cut(s) 1158, 1170, 1265
HinP1I GCGC 3 cut(s) 1158, 1170, 1265
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 1413
HinfI GANTC 4 cut(s) 719, 894, 916, 1022
HpaII CCGG 5 cut(s) 63, 226, 346, 860, 1229
HphI GGTGA 3 cut(s) 192, 484, 1399
Hpy166II GTNNAC 3 cut(s) 162, 377, 492
Hpy188I TCNGA 8 cut(s) 10, 115, 439, 449, 781, 1004, 1027, 1053
Hpy188III TCNNGA 7 cut(s) 188, 308, 346, 526, 855, 1229, 1463
Hpy8I GTNNAC 3 cut(s) 162, 377, 492
HpyAV CCTTC 3 cut(s) 605, 813, 1249
HpyCH4III ACNGT 2 cut(s) 850, 1126
HpyCH4IV ACGT 3 cut(s) 534, 843, 1401
HpyCH4V TGCA 8 cut(s) 466, 581, 737, 901, 962, 1225, 1270, 1277
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 1189, 1306
HpyF3I CTNAG 4 cut(s) 438, 666, 703, 887
HpySE526I ACGT 3 cut(s) 534, 843, 1401
Hsp92I GRCGYC 1 cut(s) 1401
Hsp92II CATG 5 cut(s) 809, 884, 901, 1191, 1298
HspAI GCGC 3 cut(s) 1158, 1170, 1265
Kpn2I TCCGGA 2 cut(s) 345, 1228
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 5 cut(s) 449, 562, 802, 1055, 1344
LmnI GCTCC 3 cut(s) 348, 745, 1426
Lsp1109I GCAGC 7 cut(s) 257, 260, 749, 941, 1254, 1274, 1289
LweI GCATC 3 cut(s) 419, 910, 1234
MabI ACCWGGT 2 cut(s) 366, 964
MaeI CTAG 1 cut(s) 855
MaeII ACGT 3 cut(s) 534, 843, 1401
MaeIII GTNAC 4 cut(s) 261, 844, 1325, 1363
MalI GATC 5 cut(s) 451, 564, 804, 1057, 1346
MbiI CCGCTC 1 cut(s) 130
MboI GATC 5 cut(s) 449, 562, 802, 1055, 1344
MboII GAAGA 5 cut(s) 38, 47, 598, 1128, 1396
MfeI CAATTG 1 cut(s) 1391
MflI RGATCY 2 cut(s) 1055, 1344
MhlI GDGCHC 1 cut(s) 345
MnlI CCTC 7 cut(s) 63, 307, 342, 352, 433, 646, 918
Mph1103I ATGCAT 1 cut(s) 903
MroI TCCGGA 2 cut(s) 345, 1228
MroNI GCCGGC 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 6 cut(s) 548, 615, 797, 836, 954, 1094
MslI CAYNNNNRTG 3 cut(s) 653, 1316, 1439
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 5 cut(s) 63, 226, 346, 860, 1229
MspR9I CCNGG 6 cut(s) 40, 339, 368, 496, 732, 966
MunI CAATTG 1 cut(s) 1391
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 6 cut(s) 40, 339, 368, 496, 732, 966
MvnI CGCG 1 cut(s) 1158
MwoI GCNNNNNNNGC 3 cut(s) 245, 1189, 1306
NaeI GCCGGC 1 cut(s) 64
NdeI CATATG 1 cut(s) 921
NdeII GATC 5 cut(s) 449, 562, 802, 1055, 1344
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 5 cut(s) 809, 884, 901, 1191, 1298
NlaIV GGNNCC 3 cut(s) 37, 344, 1233
NmeAIII GCCGAG 2 cut(s) 394, 1285
NmuCI GTSAC 3 cut(s) 261, 1325, 1363
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 1 cut(s) 884
PciI ACATGT 1 cut(s) 880
PctI GAATGC 1 cut(s) 964
PdiI GCCGGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 4 cut(s) 719, 894, 916, 1022
PkrI GCNGC 7 cut(s) 247, 250, 739, 931, 1264, 1269, 1279
PscI ACATGT 1 cut(s) 880
PshBI ATTAAT 2 cut(s) 836, 1094
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 6 cut(s) 38, 337, 366, 494, 730, 964
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 6 cut(s) 38, 337, 366, 494, 730, 964
PspN4I GGNNCC 3 cut(s) 37, 344, 1233
PspPI GGNCC 1 cut(s) 1085
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 1055, 1344
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 1 cut(s) 879
RsaNI GTAC 1 cut(s) 878
RseI CAYNNNNRTG 3 cut(s) 653, 1316, 1439
SalI GTCGAC 1 cut(s) 375
SaqAI TTAA 6 cut(s) 548, 615, 797, 836, 954, 1094
SatI GCNGC 7 cut(s) 246, 249, 738, 930, 1263, 1268, 1278
Sau3AI GATC 5 cut(s) 449, 562, 802, 1055, 1344
Sau96I GGNCC 1 cut(s) 1085
ScrFI CCNGG 6 cut(s) 40, 339, 368, 496, 732, 966
SduI GDGCHC 1 cut(s) 345
SexAI ACCWGGT 2 cut(s) 366, 964
SfaNI GCATC 3 cut(s) 419, 910, 1234
SfcI CTRYAG 1 cut(s) 814
SinI GGWCC 1 cut(s) 1085
SmiMI CAYNNNNRTG 3 cut(s) 653, 1316, 1439
SsiI CCGC 3 cut(s) 4, 130, 1156
SspMI CTAG 1 cut(s) 855
StyD4I CCNGG 6 cut(s) 38, 337, 366, 494, 730, 964
TaaI ACNGT 2 cut(s) 850, 1126
TaiI ACGT 3 cut(s) 537, 846, 1404
TaqI TCGA 4 cut(s) 24, 122, 376, 946
TatI WGTACW 1 cut(s) 877
TfiI GAWTC 4 cut(s) 719, 894, 916, 1022
Tru1I TTAA 6 cut(s) 548, 615, 797, 836, 954, 1094
Tru9I TTAA 6 cut(s) 548, 615, 797, 836, 954, 1094
TscAI CASTG 2 cut(s) 425, 588
TseFI GTSAC 3 cut(s) 261, 1325, 1363
TseI GCWGC 7 cut(s) 245, 248, 737, 929, 1262, 1267, 1277
Tsp45I GTSAC 3 cut(s) 261, 1325, 1363
TspDTI ATGAA 7 cut(s) 257, 371, 587, 886, 908, 1423, 1460
TspRI CASTG 2 cut(s) 425, 588
VpaK11BI GGWCC 1 cut(s) 1085
VspI ATTAAT 2 cut(s) 836, 1094
XagI CCTNNNNNAGG 2 cut(s) 336, 969
XapI RAATTY 2 cut(s) 431, 589
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 1 cut(s) 855
ZraI GACGTC 1 cut(s) 1402
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.