Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 2 - 183 | 4.2e-52 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 625 |
| AccI | GTMKAC | 1 cut(s) | 848 |
| AclWI | GGATC | 1 cut(s) | 501 |
| AcoI | YGGCCR | 1 cut(s) | 47 |
| AcsI | RAATTY | 2 cut(s) | 406, 988 |
| AcuI | CTGAAG | 3 cut(s) | 120, 356, 954 |
| AcyI | GRCGYC | 1 cut(s) | 622 |
| AdeI | CACNNNGTG | 1 cut(s) | 149 |
| AfaI | GTAC | 4 cut(s) | 110, 425, 740, 860 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 88, 207, 761 |
| AflIII | ACRYGT | 1 cut(s) | 1099 |
| AgsI | TTSAA | 4 cut(s) | 169, 421, 440, 745 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 844 |
| AjnI | CCWGG | 2 cut(s) | 124, 754 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 413, 445 |
| AleI | CACNNNNGTG | 1 cut(s) | 869 |
| AluBI | AGCT | 5 cut(s) | 446, 583, 938, 1055, 1205 |
| AluI | AGCT | 5 cut(s) | 446, 583, 938, 1055, 1205 |
| Alw26I | GTCTC | 3 cut(s) | 229, 408, 500 |
| AlwI | GGATC | 1 cut(s) | 501 |
| Ama87I | CYCGRG | 1 cut(s) | 201 |
| AoxI | GGCC | 1 cut(s) | 47 |
| ApeKI | GCWGC | 2 cut(s) | 32, 1052 |
| ApoI | RAATTY | 2 cut(s) | 406, 988 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AsuC2I | CCSGG | 2 cut(s) | 202, 203 |
| AsuHPI | GGTGA | 3 cut(s) | 161, 189, 856 |
| AvaI | CYCGRG | 1 cut(s) | 201 |
| BalI | TGGCCA | 1 cut(s) | 49 |
| BbsI | GAAGAC | 3 cut(s) | 110, 362, 1241 |
| BbvI | GCAGC | 2 cut(s) | 44, 1064 |
| BccI | CCATC | 1 cut(s) | 452 |
| BciT130I | CCWGG | 2 cut(s) | 126, 756 |
| BciVI | GTATCC | 1 cut(s) | 239 |
| BclI | TGATCA | 1 cut(s) | 577 |
| BcnI | CCSGG | 2 cut(s) | 202, 203 |
| BcoDI | GTCTC | 3 cut(s) | 229, 408, 500 |
| BfaI | CTAG | 5 cut(s) | 447, 563, 645, 791, 1212 |
| BfuI | GTATCC | 1 cut(s) | 239 |
| BisI | GCNGC | 2 cut(s) | 33, 1053 |
| BlsI | GCNGC | 2 cut(s) | 34, 1054 |
| BmcAI | AGTACT | 1 cut(s) | 425 |
| Bme1390I | CCNGG | 4 cut(s) | 126, 202, 203, 756 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 844 |
| BmeT110I | CYCGRG | 1 cut(s) | 201 |
| BmrFI | CCNGG | 4 cut(s) | 126, 202, 203, 756 |
| BmsI | GCATC | 4 cut(s) | 143, 471, 802, 1129 |
| BpiI | GAAGAC | 3 cut(s) | 110, 362, 1241 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 106, 138 |
| BpuEI | CTTGAG | 1 cut(s) | 754 |
| BpuMI | CCSGG | 2 cut(s) | 202, 203 |
| BsaHI | GRCGYC | 1 cut(s) | 622 |
| BsaJI | CCNNGG | 4 cut(s) | 125, 200, 201, 1173 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 88, 207, 761 |
| Bse3DI | GCAATG | 1 cut(s) | 1032 |
| BseBI | CCWGG | 2 cut(s) | 126, 756 |
| BseDI | CCNNGG | 4 cut(s) | 125, 200, 201, 1173 |
| BseGI | GGATG | 3 cut(s) | 331, 352, 1144 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 88, 207, 761 |
| BseMI | GCAATG | 1 cut(s) | 1032 |
| BseMII | CTCAG | 2 cut(s) | 239, 381 |
| BseRI | GAGGAG | 1 cut(s) | 1190 |
| BseXI | GCAGC | 2 cut(s) | 44, 1064 |
| BshFI | GGCC | 1 cut(s) | 49 |
| BsiHKCI | CYCGRG | 1 cut(s) | 201 |
| BsiSI | CCGG | 1 cut(s) | 202 |
| BslFI | GGGAC | 2 cut(s) | 10, 633 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 88, 207, 761 |
| BsmAI | GTCTC | 3 cut(s) | 229, 408, 500 |
| BsmBI | CGTCTC | 1 cut(s) | 229 |
| BsmFI | GGGAC | 2 cut(s) | 10, 633 |
| BsmI | GAATGC | 1 cut(s) | 77 |
| BsnI | GGCC | 1 cut(s) | 49 |
| BsoBI | CYCGRG | 1 cut(s) | 201 |
| Bsp1407I | TGTACA | 1 cut(s) | 108 |
| Bsp143I | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| BspANI | GGCC | 1 cut(s) | 49 |
| BspCNI | CTCAG | 2 cut(s) | 238, 382 |
| BspPI | GGATC | 1 cut(s) | 501 |
| BsrDI | GCAATG | 1 cut(s) | 1032 |
| BsrGI | TGTACA | 1 cut(s) | 108 |
| BssECI | CCNNGG | 4 cut(s) | 125, 200, 201, 1173 |
| BssMI | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| BssNI | GRCGYC | 1 cut(s) | 622 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 756 |
| Bst4CI | ACNGT | 3 cut(s) | 10, 195, 307 |
| BstACI | GRCGYC | 1 cut(s) | 622 |
| BstAUI | TGTACA | 1 cut(s) | 108 |
| BstDEI | CTNAG | 3 cut(s) | 225, 390, 1017 |
| BstF5I | GGATG | 3 cut(s) | 331, 352, 1144 |
| BstKTI | GATC | 4 cut(s) | 496, 580, 926, 1114 |
| BstMAI | GTCTC | 3 cut(s) | 229, 408, 500 |
| BstMBI | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 821 |
| BstNI | CCWGG | 2 cut(s) | 126, 756 |
| BstNSI | RCATGY | 2 cut(s) | 517, 1103 |
| BstSCI | CCNGG | 4 cut(s) | 124, 200, 201, 754 |
| BstV1I | GCAGC | 2 cut(s) | 44, 1064 |
| BstV2I | GAAGAC | 3 cut(s) | 110, 362, 1241 |
| BstX2I | RGATCY | 1 cut(s) | 493 |
| BstYI | RGATCY | 1 cut(s) | 493 |
| BsuI | GTATCC | 1 cut(s) | 239 |
| BsuRI | GGCC | 1 cut(s) | 49 |
| BtsCI | GGATG | 3 cut(s) | 331, 352, 1144 |
| Cfr9I | CCCGGG | 1 cut(s) | 201 |
| CseI | GACGC | 1 cut(s) | 246 |
| Csp6I | GTAC | 4 cut(s) | 109, 424, 739, 859 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1083, 1118 |
| CviQI | GTAC | 4 cut(s) | 109, 424, 739, 859 |
| DdeI | CTNAG | 3 cut(s) | 225, 390, 1017 |
| DpnI | GATC | 4 cut(s) | 495, 579, 925, 1113 |
| DpnII | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| DraIII | CACNNNGTG | 1 cut(s) | 149 |
| DriI | GACNNNNNGTC | 1 cut(s) | 844 |
| EaeI | YGGCCR | 1 cut(s) | 47 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 844 |
| Eco57I | CTGAAG | 3 cut(s) | 120, 356, 954 |
| Eco88I | CYCGRG | 1 cut(s) | 201 |
| EcoRII | CCWGG | 2 cut(s) | 124, 754 |
| EcoT22I | ATGCAT | 2 cut(s) | 79, 136 |
| Esp3I | CGTCTC | 1 cut(s) | 229 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 413, 445 |
| FaqI | GGGAC | 2 cut(s) | 10, 633 |
| FauNDI | CATATG | 1 cut(s) | 711 |
| FbaI | TGATCA | 1 cut(s) | 577 |
| FblI | GTMKAC | 1 cut(s) | 848 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 1053 |
| FokI | GGATG | 3 cut(s) | 338, 359, 1151 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 1053 |
| FspBI | CTAG | 5 cut(s) | 447, 563, 645, 791, 1212 |
| GluI | GCNGC | 2 cut(s) | 33, 1053 |
| HaeIII | GGCC | 1 cut(s) | 49 |
| HapII | CCGG | 1 cut(s) | 202 |
| HgaI | GACGC | 1 cut(s) | 246 |
| Hin1I | GRCGYC | 1 cut(s) | 622 |
| HincII | GTYRAC | 1 cut(s) | 96 |
| HindII | GTYRAC | 1 cut(s) | 96 |
| HinfI | GANTC | 5 cut(s) | 115, 219, 679, 729, 1229 |
| HpaI | GTTAAC | 1 cut(s) | 96 |
| HpaII | CCGG | 1 cut(s) | 202 |
| HphI | GGTGA | 3 cut(s) | 161, 189, 856 |
| Hpy166II | GTNNAC | 4 cut(s) | 96, 109, 849, 971 |
| Hpy188I | TCNGA | 7 cut(s) | 42, 265, 375, 391, 477, 531, 627 |
| Hpy188III | TCNNGA | 3 cut(s) | 575, 733, 1253 |
| Hpy8I | GTNNAC | 4 cut(s) | 96, 109, 849, 971 |
| HpyAV | CCTTC | 1 cut(s) | 292 |
| HpyCH4III | ACNGT | 3 cut(s) | 10, 195, 307 |
| HpyCH4IV | ACGT | 2 cut(s) | 622, 1257 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 821 |
| HpyF3I | CTNAG | 3 cut(s) | 225, 390, 1017 |
| HpySE526I | ACGT | 2 cut(s) | 622, 1257 |
| Hsp92I | GRCGYC | 1 cut(s) | 622 |
| Ksp22I | TGATCA | 1 cut(s) | 577 |
| KspAI | GTTAAC | 1 cut(s) | 96 |
| Kzo9I | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| LmnI | GCTCC | 1 cut(s) | 1177 |
| Lsp1109I | GCAGC | 2 cut(s) | 44, 1064 |
| LweI | GCATC | 4 cut(s) | 143, 471, 802, 1129 |
| MaeI | CTAG | 5 cut(s) | 447, 563, 645, 791, 1212 |
| MaeII | ACGT | 2 cut(s) | 622, 1257 |
| MaeIII | GTNAC | 5 cut(s) | 195, 301, 636, 886, 1253 |
| MalI | GATC | 4 cut(s) | 495, 579, 925, 1113 |
| MboI | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| MboII | GAAGA | 8 cut(s) | 110, 113, 181, 362, 388, 415, 457, 1241 |
| MfeI | CAATTG | 1 cut(s) | 1031 |
| MflI | RGATCY | 1 cut(s) | 493 |
| MlsI | TGGCCA | 1 cut(s) | 49 |
| MluCI | AATT | 8 cut(s) | 43, 59, 259, 360, 406, 988, 1031, 1181 |
| MluNI | TGGCCA | 1 cut(s) | 49 |
| MlyI | GAGTC | 3 cut(s) | 124, 688, 1223 |
| MmeI | TCCRAC | 4 cut(s) | 471, 498, 611, 1116 |
| MnlI | CCTC | 7 cut(s) | 132, 603, 709, 729, 869, 941, 1168 |
| Mox20I | TGGCCA | 1 cut(s) | 49 |
| Mph1103I | ATGCAT | 2 cut(s) | 79, 136 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MscI | TGGCCA | 1 cut(s) | 49 |
| MseI | TTAA | 7 cut(s) | 95, 189, 281, 767, 1011, 1125, 1148 |
| MslI | CAYNNNNRTG | 3 cut(s) | 150, 792, 869 |
| Msp20I | TGGCCA | 1 cut(s) | 49 |
| MspI | CCGG | 1 cut(s) | 202 |
| MspR9I | CCNGG | 4 cut(s) | 126, 202, 203, 756 |
| MunI | CAATTG | 1 cut(s) | 1031 |
| Mva1269I | GAATGC | 1 cut(s) | 77 |
| MvaI | CCWGG | 2 cut(s) | 126, 756 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 821 |
| NciI | CCSGG | 2 cut(s) | 202, 203 |
| NdeI | CATATG | 1 cut(s) | 711 |
| NdeII | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| NmeAIII | GCCGAG | 1 cut(s) | 1198 |
| NmuCI | GTSAC | 3 cut(s) | 195, 636, 1253 |
| NsiI | ATGCAT | 2 cut(s) | 79, 136 |
| NspI | RCATGY | 2 cut(s) | 517, 1103 |
| OliI | CACNNNNGTG | 1 cut(s) | 869 |
| PciI | ACATGT | 1 cut(s) | 1099 |
| PctI | GAATGC | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 219, 729 |
| PkrI | GCNGC | 2 cut(s) | 34, 1054 |
| PleI | GAGTC | 3 cut(s) | 123, 687, 1223 |
| PpsI | GAGTC | 3 cut(s) | 123, 687, 1223 |
| PscI | ACATGT | 1 cut(s) | 1099 |
| Psp6I | CCWGG | 2 cut(s) | 124, 754 |
| PspGI | CCWGG | 2 cut(s) | 124, 754 |
| PsuI | RGATCY | 1 cut(s) | 493 |
| RsaI | GTAC | 4 cut(s) | 110, 425, 740, 860 |
| RsaNI | GTAC | 4 cut(s) | 109, 424, 739, 859 |
| RseI | CAYNNNNRTG | 3 cut(s) | 150, 792, 869 |
| SaqAI | TTAA | 7 cut(s) | 95, 189, 281, 767, 1011, 1125, 1148 |
| SatI | GCNGC | 2 cut(s) | 33, 1053 |
| Sau3AI | GATC | 4 cut(s) | 493, 577, 923, 1111 |
| ScaI | AGTACT | 1 cut(s) | 425 |
| SchI | GAGTC | 3 cut(s) | 124, 688, 1223 |
| ScrFI | CCNGG | 4 cut(s) | 126, 202, 203, 756 |
| SfaNI | GCATC | 4 cut(s) | 143, 471, 802, 1129 |
| SmaI | CCCGGG | 1 cut(s) | 203 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 150, 792, 869 |
| SmlI | CTYRAG | 1 cut(s) | 733 |
| SmoI | CTYRAG | 1 cut(s) | 733 |
| Sse9I | AATT | 8 cut(s) | 43, 59, 259, 360, 406, 988, 1031, 1181 |
| SspMI | CTAG | 5 cut(s) | 447, 563, 645, 791, 1212 |
| StyD4I | CCNGG | 4 cut(s) | 124, 200, 201, 754 |
| TaaI | ACNGT | 3 cut(s) | 10, 195, 307 |
| TaiI | ACGT | 2 cut(s) | 625, 1260 |
| TaqI | TCGA | 2 cut(s) | 546, 1114 |
| TaqII | GACCGA | 1 cut(s) | 1104 |
| TasI | AATT | 8 cut(s) | 43, 59, 259, 360, 406, 988, 1031, 1181 |
| TatI | WGTACW | 2 cut(s) | 108, 423 |
| TfiI | GAWTC | 2 cut(s) | 219, 729 |
| Tru1I | TTAA | 7 cut(s) | 95, 189, 281, 767, 1011, 1125, 1148 |
| Tru9I | TTAA | 7 cut(s) | 95, 189, 281, 767, 1011, 1125, 1148 |
| TseFI | GTSAC | 3 cut(s) | 195, 636, 1253 |
| TseI | GCWGC | 2 cut(s) | 32, 1052 |
| Tsp45I | GTSAC | 3 cut(s) | 195, 636, 1253 |
| TspDTI | ATGAA | 4 cut(s) | 17, 44, 416, 1111 |
| TspMI | CCCGGG | 1 cut(s) | 201 |
| XapI | RAATTY | 2 cut(s) | 406, 988 |
| XceI | RCATGY | 2 cut(s) | 517, 1103 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1232 |
| XmaI | CCCGGG | 1 cut(s) | 201 |
| XmiI | GTMKAC | 1 cut(s) | 848 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 5 cut(s) | 447, 563, 645, 791, 1212 |
| ZraI | GACGTC | 1 cut(s) | 623 |
| ZrmI | AGTACT | 1 cut(s) | 425 |
| Zsp2I | ATGCAT | 2 cut(s) | 79, 136 |