gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 862 |
| AccB1I | GGYRCC | 1 cut(s) | 599 |
| AciI | CCGC | 1 cut(s) | 797 |
| AclWI | GGATC | 2 cut(s) | 7, 665 |
| AcoI | YGGCCR | 1 cut(s) | 835 |
| AcsI | RAATTY | 1 cut(s) | 843 |
| AfaI | GTAC | 1 cut(s) | 563 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 172, 266, 339, 839 |
| AgsI | TTSAA | 5 cut(s) | 128, 581, 794, 877, 1006 |
| AjnI | CCWGG | 2 cut(s) | 832, 968 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 551, 583 |
| AluBI | AGCT | 3 cut(s) | 298, 374, 483 |
| AluI | AGCT | 3 cut(s) | 298, 374, 483 |
| Alw26I | GTCTC | 2 cut(s) | 185, 312 |
| AlwI | GGATC | 2 cut(s) | 7, 665 |
| AoxI | GGCC | 1 cut(s) | 835 |
| ApeKI | GCWGC | 1 cut(s) | 437 |
| ApoI | RAATTY | 1 cut(s) | 843 |
| AseI | ATTAAT | 1 cut(s) | 704 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 421 |
| AspA2I | CCTAGG | 1 cut(s) | 260 |
| AspS9I | GGNCC | 1 cut(s) | 924 |
| AsuHPI | GGTGA | 1 cut(s) | 668 |
| AvaII | GGWCC | 1 cut(s) | 924 |
| AvrII | CCTAGG | 1 cut(s) | 260 |
| BalI | TGGCCA | 1 cut(s) | 837 |
| BanI | GGYRCC | 1 cut(s) | 599 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 282, 314 |
| BauI | CACGAG | 1 cut(s) | 916 |
| BbvI | GCAGC | 1 cut(s) | 449 |
| BccI | CCATC | 3 cut(s) | 110, 616, 682 |
| BceAI | ACGGC | 1 cut(s) | 331 |
| BciT130I | CCWGG | 2 cut(s) | 834, 970 |
| BcoDI | GTCTC | 2 cut(s) | 185, 312 |
| BfaI | CTAG | 3 cut(s) | 261, 596, 777 |
| BfuAI | ACCTGC | 1 cut(s) | 862 |
| BglII | AGATCT | 1 cut(s) | 730 |
| BisI | GCNGC | 2 cut(s) | 438, 798 |
| BlnI | CCTAGG | 1 cut(s) | 260 |
| BlsI | GCNGC | 2 cut(s) | 439, 799 |
| Bme1390I | CCNGG | 2 cut(s) | 834, 970 |
| Bme18I | GGWCC | 1 cut(s) | 924 |
| BmgT120I | GGNCC | 1 cut(s) | 924 |
| BmiI | GGNNCC | 1 cut(s) | 601 |
| BmrFI | CCNGG | 2 cut(s) | 834, 970 |
| BmsI | GCATC | 2 cut(s) | 338, 880 |
| BpuEI | CTTGAG | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 2 cut(s) | 260, 838 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 172, 266, 339, 839 |
| Bse1I | ACTGG | 1 cut(s) | 203 |
| BseBI | CCWGG | 2 cut(s) | 834, 970 |
| BseDI | CCNNGG | 2 cut(s) | 260, 838 |
| BseGI | GGATG | 2 cut(s) | 121, 329 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 172, 266, 339, 839 |
| BseNI | ACTGG | 1 cut(s) | 203 |
| BseRI | GAGGAG | 1 cut(s) | 224 |
| BseXI | GCAGC | 1 cut(s) | 449 |
| BsgI | GTGCAG | 1 cut(s) | 1030 |
| Bsh1285I | CGRYCG | 1 cut(s) | 624 |
| BshFI | GGCC | 1 cut(s) | 837 |
| BshNI | GGYRCC | 1 cut(s) | 599 |
| BsiEI | CGRYCG | 1 cut(s) | 624 |
| BslFI | GGGAC | 1 cut(s) | 133 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 172, 266, 339, 839 |
| BsmAI | GTCTC | 2 cut(s) | 185, 312 |
| BsmFI | GGGAC | 1 cut(s) | 133 |
| BsmI | GAATGC | 1 cut(s) | 942 |
| BsnI | GGCC | 1 cut(s) | 837 |
| Bsp143I | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| BspACI | CCGC | 1 cut(s) | 797 |
| BspANI | GGCC | 1 cut(s) | 837 |
| BspLI | GGNNCC | 1 cut(s) | 601 |
| BspMI | ACCTGC | 1 cut(s) | 862 |
| BspPI | GGATC | 2 cut(s) | 7, 665 |
| BspT107I | GGYRCC | 1 cut(s) | 599 |
| BsrI | ACTGG | 1 cut(s) | 203 |
| BssECI | CCNNGG | 2 cut(s) | 260, 838 |
| BssMI | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| BssSI | CACGAG | 1 cut(s) | 916 |
| BssT1I | CCWWGG | 2 cut(s) | 260, 838 |
| Bst2BI | CACGAG | 1 cut(s) | 916 |
| Bst2UI | CCWGG | 2 cut(s) | 834, 970 |
| Bst4CI | ACNGT | 7 cut(s) | 124, 144, 223, 528, 783, 934, 995 |
| Bst6I | CTCTTC | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 2 cut(s) | 296, 828 |
| BstDEI | CTNAG | 1 cut(s) | 504 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 837 |
| BstF5I | GGATG | 2 cut(s) | 121, 329 |
| BstKTI | GATC | 5 cut(s) | 15, 628, 673, 733, 866 |
| BstMAI | GTCTC | 2 cut(s) | 185, 312 |
| BstMBI | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| BstMCI | CGRYCG | 1 cut(s) | 624 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 206 |
| BstNI | CCWGG | 2 cut(s) | 834, 970 |
| BstNSI | RCATGY | 1 cut(s) | 250 |
| BstSCI | CCNGG | 2 cut(s) | 832, 968 |
| BstV1I | GCAGC | 1 cut(s) | 449 |
| BstX2I | RGATCY | 3 cut(s) | 12, 670, 730 |
| BstYI | RGATCY | 3 cut(s) | 12, 670, 730 |
| BsuRI | GGCC | 1 cut(s) | 837 |
| BtsCI | GGATG | 2 cut(s) | 121, 329 |
| BtsIMutI | CAGTG | 1 cut(s) | 524 |
| BveI | ACCTGC | 1 cut(s) | 862 |
| Cac8I | GCNNGC | 2 cut(s) | 296, 828 |
| Cfr13I | GGNCC | 1 cut(s) | 924 |
| Csp6I | GTAC | 1 cut(s) | 562 |
| CviAII | CATG | 3 cut(s) | 247, 749, 956 |
| CviQI | GTAC | 1 cut(s) | 562 |
| DdeI | CTNAG | 1 cut(s) | 504 |
| DpnI | GATC | 5 cut(s) | 14, 627, 672, 732, 865 |
| DpnII | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| EaeI | YGGCCR | 1 cut(s) | 835 |
| Eam1104I | CTCTTC | 1 cut(s) | 315 |
| EarI | CTCTTC | 1 cut(s) | 315 |
| Eco130I | CCWWGG | 2 cut(s) | 260, 838 |
| Eco47I | GGWCC | 1 cut(s) | 924 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 837 |
| EcoRI | GAATTC | 1 cut(s) | 843 |
| EcoRII | CCWGG | 2 cut(s) | 832, 968 |
| EcoT14I | CCWWGG | 2 cut(s) | 260, 838 |
| ErhI | CCWWGG | 2 cut(s) | 260, 838 |
| FaeI | CATG | 3 cut(s) | 250, 752, 959 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 831, 863 |
| FaqI | GGGAC | 1 cut(s) | 133 |
| FatI | CATG | 3 cut(s) | 246, 748, 955 |
| Fnu4HI | GCNGC | 2 cut(s) | 438, 798 |
| FokI | GGATG | 2 cut(s) | 128, 316 |
| Fsp4HI | GCNGC | 2 cut(s) | 438, 798 |
| FspBI | CTAG | 3 cut(s) | 261, 596, 777 |
| GluI | GCNGC | 2 cut(s) | 438, 798 |
| HaeIII | GGCC | 1 cut(s) | 837 |
| Hin1II | CATG | 3 cut(s) | 250, 752, 959 |
| HincII | GTYRAC | 2 cut(s) | 216, 357 |
| HindII | GTYRAC | 2 cut(s) | 216, 357 |
| HindIII | AAGCTT | 1 cut(s) | 296 |
| HinfI | GANTC | 2 cut(s) | 253, 432 |
| HphI | GGTGA | 1 cut(s) | 668 |
| Hpy166II | GTNNAC | 3 cut(s) | 216, 244, 357 |
| Hpy188I | TCNGA | 3 cut(s) | 269, 416, 687 |
| Hpy188III | TCNNGA | 4 cut(s) | 113, 333, 612, 791 |
| Hpy8I | GTNNAC | 3 cut(s) | 216, 244, 357 |
| HpyAV | CCTTC | 3 cut(s) | 148, 871, 915 |
| HpyCH4III | ACNGT | 7 cut(s) | 124, 144, 223, 528, 783, 934, 995 |
| HpyCH4V | TGCA | 8 cut(s) | 226, 250, 294, 524, 909, 942, 959, 1011 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 504 |
| Hsp92II | CATG | 3 cut(s) | 250, 752, 959 |
| Kzo9I | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| Lsp1109I | GCAGC | 1 cut(s) | 449 |
| LweI | GCATC | 2 cut(s) | 338, 880 |
| MaeI | CTAG | 3 cut(s) | 261, 596, 777 |
| MaeIII | GTNAC | 2 cut(s) | 783, 928 |
| MalI | GATC | 5 cut(s) | 14, 627, 672, 732, 865 |
| MboI | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| MboII | GAAGA | 3 cut(s) | 302, 593, 680 |
| MflI | RGATCY | 3 cut(s) | 12, 670, 730 |
| MlsI | TGGCCA | 1 cut(s) | 837 |
| MluCI | AATT | 5 cut(s) | 509, 659, 761, 843, 872 |
| MluNI | TGGCCA | 1 cut(s) | 837 |
| MnlI | CCTC | 9 cut(s) | 63, 72, 166, 242, 245, 267, 374, 481, 681 |
| Mox20I | TGGCCA | 1 cut(s) | 837 |
| MroXI | GAANNNNTTC | 1 cut(s) | 421 |
| MscI | TGGCCA | 1 cut(s) | 837 |
| MseI | TTAA | 3 cut(s) | 320, 704, 755 |
| MslI | CAYNNNNRTG | 1 cut(s) | 647 |
| Msp20I | TGGCCA | 1 cut(s) | 837 |
| MspA1I | CMGCKG | 1 cut(s) | 374 |
| MspR9I | CCNGG | 2 cut(s) | 834, 970 |
| Mva1269I | GAATGC | 1 cut(s) | 942 |
| MvaI | CCWGG | 2 cut(s) | 834, 970 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 206 |
| NdeII | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| NlaIII | CATG | 3 cut(s) | 250, 752, 959 |
| NlaIV | GGNNCC | 1 cut(s) | 601 |
| NmuCI | GTSAC | 1 cut(s) | 783 |
| NspI | RCATGY | 1 cut(s) | 250 |
| PctI | GAATGC | 1 cut(s) | 942 |
| PdmI | GAANNNNTTC | 1 cut(s) | 421 |
| PfeI | GAWTC | 2 cut(s) | 253, 432 |
| PfoI | TCCNGGA | 1 cut(s) | 968 |
| PkrI | GCNGC | 2 cut(s) | 439, 799 |
| PshBI | ATTAAT | 1 cut(s) | 704 |
| Psp6I | CCWGG | 2 cut(s) | 832, 968 |
| PspGI | CCWGG | 2 cut(s) | 832, 968 |
| PspN4I | GGNNCC | 1 cut(s) | 601 |
| PspPI | GGNCC | 1 cut(s) | 924 |
| PsuI | RGATCY | 3 cut(s) | 12, 670, 730 |
| PvuII | CAGCTG | 1 cut(s) | 374 |
| RsaI | GTAC | 1 cut(s) | 563 |
| RsaNI | GTAC | 1 cut(s) | 562 |
| RseI | CAYNNNNRTG | 1 cut(s) | 647 |
| SaqAI | TTAA | 3 cut(s) | 320, 704, 755 |
| SatI | GCNGC | 2 cut(s) | 438, 798 |
| Sau3AI | GATC | 5 cut(s) | 12, 625, 670, 730, 863 |
| Sau96I | GGNCC | 1 cut(s) | 924 |
| ScrFI | CCNGG | 2 cut(s) | 834, 970 |
| SfaNI | GCATC | 2 cut(s) | 338, 880 |
| SinI | GGWCC | 1 cut(s) | 924 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 647 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| Sse9I | AATT | 5 cut(s) | 509, 659, 761, 843, 872 |
| SsiI | CCGC | 1 cut(s) | 797 |
| SspI | AATATT | 1 cut(s) | 810 |
| SspMI | CTAG | 3 cut(s) | 261, 596, 777 |
| StyD4I | CCNGG | 2 cut(s) | 832, 968 |
| StyI | CCWWGG | 2 cut(s) | 260, 838 |
| TaaI | ACNGT | 7 cut(s) | 124, 144, 223, 528, 783, 934, 995 |
| TaqI | TCGA | 2 cut(s) | 518, 624 |
| TaqII | GACCGA | 2 cut(s) | 610, 1015 |
| TasI | AATT | 5 cut(s) | 509, 659, 761, 843, 872 |
| TauI | GCSGC | 1 cut(s) | 800 |
| TfiI | GAWTC | 2 cut(s) | 253, 432 |
| Tru1I | TTAA | 3 cut(s) | 320, 704, 755 |
| Tru9I | TTAA | 3 cut(s) | 320, 704, 755 |
| TscAI | CASTG | 1 cut(s) | 531 |
| TseFI | GTSAC | 1 cut(s) | 783 |
| TseI | GCWGC | 1 cut(s) | 437 |
| Tsp45I | GTSAC | 1 cut(s) | 783 |
| TspDTI | ATGAA | 4 cut(s) | 17, 371, 665, 737 |
| TspGWI | ACGGA | 1 cut(s) | 916 |
| TspRI | CASTG | 1 cut(s) | 531 |
| VpaK11BI | GGWCC | 1 cut(s) | 924 |
| VspI | ATTAAT | 1 cut(s) | 704 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 837 |
| XapI | RAATTY | 1 cut(s) | 843 |
| XceI | RCATGY | 1 cut(s) | 250 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 865 |
| XmaJI | CCTAGG | 1 cut(s) | 260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 421 |
| XspI | CTAG | 3 cut(s) | 261, 596, 777 |