Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 101 - 181 | 8.9e-17 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 402, 839 |
| AccI | GTMKAC | 1 cut(s) | 830 |
| AccII | CGCG | 1 cut(s) | 74 |
| AclWI | GGATC | 1 cut(s) | 372 |
| AdeI | CACNNNGTG | 2 cut(s) | 725, 986 |
| AfaI | GTAC | 1 cut(s) | 764 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 785 |
| AflII | CTTAAG | 1 cut(s) | 344 |
| AflIII | ACRYGT | 1 cut(s) | 122 |
| AgsI | TTSAA | 6 cut(s) | 7, 112, 439, 769, 817, 1009 |
| AjnI | CCWGG | 1 cut(s) | 778 |
| AluBI | AGCT | 4 cut(s) | 176, 310, 731, 962 |
| AluI | AGCT | 4 cut(s) | 176, 310, 731, 962 |
| Alw26I | GTCTC | 1 cut(s) | 666 |
| AlwI | GGATC | 1 cut(s) | 372 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 962 |
| AoxI | GGCC | 1 cut(s) | 787 |
| ApeKI | GCWGC | 1 cut(s) | 1076 |
| AseI | ATTAAT | 1 cut(s) | 650 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 326 |
| AspLEI | GCGC | 1 cut(s) | 74 |
| AspS9I | GGNCC | 1 cut(s) | 215 |
| AsuHPI | GGTGA | 3 cut(s) | 84, 350, 711 |
| AsuII | TTCGAA | 1 cut(s) | 280 |
| AvaII | GGWCC | 1 cut(s) | 215 |
| BbvI | GCAGC | 1 cut(s) | 1063 |
| BccI | CCATC | 1 cut(s) | 281 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 563, 597 |
| BciT130I | CCWGG | 1 cut(s) | 780 |
| BcoDI | GTCTC | 1 cut(s) | 666 |
| BfaI | CTAG | 4 cut(s) | 450, 723, 879, 945 |
| BfrI | CTTAAG | 1 cut(s) | 344 |
| BfuAI | ACCTGC | 2 cut(s) | 402, 839 |
| BglII | AGATCT | 1 cut(s) | 1024 |
| BisI | GCNGC | 1 cut(s) | 1077 |
| BlpI | GCTNAGC | 1 cut(s) | 79 |
| BlsI | GCNGC | 1 cut(s) | 1078 |
| Bme1390I | CCNGG | 1 cut(s) | 780 |
| Bme18I | GGWCC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 1 cut(s) | 215 |
| BmiI | GGNNCC | 1 cut(s) | 216 |
| BmrFI | CCNGG | 1 cut(s) | 780 |
| BmsI | GCATC | 1 cut(s) | 92 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 79 |
| Bpu14I | TTCGAA | 1 cut(s) | 280 |
| BsaBI | GATNNNNATC | 1 cut(s) | 874 |
| BsaWI | WCCGGW | 1 cut(s) | 94 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 341, 371 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 785 |
| Bse1I | ACTGG | 2 cut(s) | 158, 1100 |
| Bse3DI | GCAATG | 1 cut(s) | 678 |
| Bse8I | GATNNNNATC | 1 cut(s) | 874 |
| BseBI | CCWGG | 1 cut(s) | 780 |
| BseGI | GGATG | 2 cut(s) | 103, 301 |
| BseJI | GATNNNNATC | 1 cut(s) | 874 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 785 |
| BseMI | GCAATG | 1 cut(s) | 678 |
| BseMII | CTCAG | 1 cut(s) | 954 |
| BseNI | ACTGG | 2 cut(s) | 158, 1100 |
| BseRI | GAGGAG | 1 cut(s) | 269 |
| BseXI | GCAGC | 1 cut(s) | 1063 |
| BsgI | GTGCAG | 4 cut(s) | 230, 293, 762, 975 |
| Bsh1236I | CGCG | 1 cut(s) | 74 |
| BshFI | GGCC | 1 cut(s) | 789 |
| BsiSI | CCGG | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 785 |
| BsmAI | GTCTC | 1 cut(s) | 666 |
| BsmBI | CGTCTC | 1 cut(s) | 666 |
| BsmI | GAATGC | 1 cut(s) | 328 |
| BsnI | GGCC | 1 cut(s) | 789 |
| Bsp119I | TTCGAA | 1 cut(s) | 280 |
| Bsp143I | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 789 |
| BspCNI | CTCAG | 1 cut(s) | 955 |
| BspFNI | CGCG | 1 cut(s) | 74 |
| BspLI | GGNNCC | 1 cut(s) | 216 |
| BspMI | ACCTGC | 2 cut(s) | 402, 839 |
| BspPI | GGATC | 1 cut(s) | 372 |
| BspT104I | TTCGAA | 1 cut(s) | 280 |
| BspTI | CTTAAG | 1 cut(s) | 344 |
| BsrDI | GCAATG | 1 cut(s) | 678 |
| BsrI | ACTGG | 2 cut(s) | 158, 1100 |
| BssMI | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| BssNAI | GTATAC | 1 cut(s) | 831 |
| Bst1107I | GTATAC | 1 cut(s) | 831 |
| Bst2UI | CCWGG | 1 cut(s) | 780 |
| Bst4CI | ACNGT | 1 cut(s) | 627 |
| Bst6I | CTCTTC | 1 cut(s) | 277 |
| BstAFI | CTTAAG | 1 cut(s) | 344 |
| BstBI | TTCGAA | 1 cut(s) | 280 |
| BstC8I | GCNNGC | 1 cut(s) | 76 |
| BstDEI | CTNAG | 3 cut(s) | 79, 135, 963 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 783 |
| BstF5I | GGATG | 2 cut(s) | 103, 301 |
| BstFNI | CGCG | 1 cut(s) | 74 |
| BstHHI | GCGC | 1 cut(s) | 74 |
| BstKTI | GATC | 7 cut(s) | 343, 367, 517, 604, 865, 872, 1027 |
| BstMAI | GTCTC | 1 cut(s) | 666 |
| BstMBI | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 80, 845 |
| BstNI | CCWGG | 1 cut(s) | 780 |
| BstNSI | RCATGY | 1 cut(s) | 126 |
| BstSCI | CCNGG | 1 cut(s) | 778 |
| BstUI | CGCG | 1 cut(s) | 74 |
| BstV1I | GCAGC | 1 cut(s) | 1063 |
| BstX2I | RGATCY | 2 cut(s) | 364, 1024 |
| BstYI | RGATCY | 2 cut(s) | 364, 1024 |
| BstZ17I | GTATAC | 1 cut(s) | 831 |
| BsuRI | GGCC | 1 cut(s) | 789 |
| BtsCI | GGATG | 2 cut(s) | 103, 301 |
| BtsIMutI | CAGTG | 2 cut(s) | 858, 1107 |
| BveI | ACCTGC | 2 cut(s) | 402, 839 |
| Cac8I | GCNNGC | 1 cut(s) | 76 |
| CaiI | CAGNNNCTG | 1 cut(s) | 962 |
| CfoI | GCGC | 1 cut(s) | 74 |
| Cfr13I | GGNCC | 1 cut(s) | 215 |
| Csp6I | GTAC | 1 cut(s) | 763 |
| CviAII | CATG | 5 cut(s) | 123, 130, 335, 983, 1109 |
| CviJI | RGCY | 9 cut(s) | 134, 176, 310, 591, 637, 731, 789, 944, 962 |
| CviKI_1 | RGCY | 9 cut(s) | 134, 176, 310, 591, 637, 731, 789, 944, 962 |
| CviQI | GTAC | 1 cut(s) | 763 |
| DdeI | CTNAG | 3 cut(s) | 79, 135, 963 |
| DpnI | GATC | 7 cut(s) | 342, 366, 516, 603, 864, 871, 1026 |
| DpnII | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| DraIII | CACNNNGTG | 2 cut(s) | 725, 986 |
| Eam1104I | CTCTTC | 1 cut(s) | 277 |
| EarI | CTCTTC | 1 cut(s) | 277 |
| Eco147I | AGGCCT | 1 cut(s) | 789 |
| Eco47I | GGWCC | 1 cut(s) | 215 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 783 |
| EcoRII | CCWGG | 1 cut(s) | 778 |
| EcoT22I | ATGCAT | 1 cut(s) | 841 |
| Esp3I | CGTCTC | 1 cut(s) | 666 |
| FaeI | CATG | 5 cut(s) | 126, 133, 338, 986, 1112 |
| FatI | CATG | 5 cut(s) | 122, 129, 334, 982, 1108 |
| FauNDI | CATATG | 1 cut(s) | 735 |
| FblI | GTMKAC | 1 cut(s) | 830 |
| Fnu4HI | GCNGC | 1 cut(s) | 1077 |
| FokI | GGATG | 2 cut(s) | 110, 308 |
| Fsp4HI | GCNGC | 1 cut(s) | 1077 |
| FspBI | CTAG | 4 cut(s) | 450, 723, 879, 945 |
| GlaI | GCGC | 1 cut(s) | 73 |
| GluI | GCNGC | 1 cut(s) | 1077 |
| HaeIII | GGCC | 1 cut(s) | 789 |
| HapII | CCGG | 1 cut(s) | 95 |
| HhaI | GCGC | 1 cut(s) | 74 |
| Hin1II | CATG | 5 cut(s) | 126, 133, 338, 986, 1112 |
| Hin6I | GCGC | 1 cut(s) | 72 |
| HinP1I | GCGC | 1 cut(s) | 72 |
| HincII | GTYRAC | 1 cut(s) | 25 |
| HindII | GTYRAC | 1 cut(s) | 25 |
| HinfI | GANTC | 8 cut(s) | 101, 139, 167, 240, 277, 505, 577, 775 |
| HpaII | CCGG | 1 cut(s) | 95 |
| HphI | GGTGA | 3 cut(s) | 84, 350, 711 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 471, 831 |
| Hpy188I | TCNGA | 5 cut(s) | 106, 205, 514, 567, 633 |
| Hpy188III | TCNNGA | 3 cut(s) | 502, 599, 879 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 471, 831 |
| Hpy99I | CGWCG | 1 cut(s) | 870 |
| HpyAV | CCTTC | 2 cut(s) | 341, 818 |
| HpyCH4III | ACNGT | 1 cut(s) | 627 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 80, 845 |
| HpyF3I | CTNAG | 3 cut(s) | 79, 135, 963 |
| Hsp92II | CATG | 5 cut(s) | 126, 133, 338, 986, 1112 |
| HspAI | GCGC | 1 cut(s) | 72 |
| Kzo9I | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| Lsp1109I | GCAGC | 1 cut(s) | 1063 |
| LweI | GCATC | 1 cut(s) | 92 |
| MaeI | CTAG | 4 cut(s) | 450, 723, 879, 945 |
| MaeIII | GTNAC | 6 cut(s) | 90, 226, 414, 745, 910, 978 |
| MalI | GATC | 7 cut(s) | 342, 366, 516, 603, 864, 871, 1026 |
| MboI | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| MboII | GAAGA | 3 cut(s) | 294, 496, 781 |
| MflI | RGATCY | 2 cut(s) | 364, 1024 |
| MluCI | AATT | 3 cut(s) | 651, 904, 1013 |
| MlyI | GAGTC | 3 cut(s) | 148, 514, 769 |
| MmeI | TCCRAC | 1 cut(s) | 242 |
| MnlI | CCTC | 7 cut(s) | 247, 254, 343, 459, 627, 753, 779 |
| Mph1103I | ATGCAT | 1 cut(s) | 841 |
| MroXI | GAANNNNTTC | 1 cut(s) | 326 |
| MseI | TTAA | 5 cut(s) | 318, 345, 479, 650, 1035 |
| MslI | CAYNNNNRTG | 3 cut(s) | 204, 738, 816 |
| MspCI | CTTAAG | 1 cut(s) | 344 |
| MspI | CCGG | 1 cut(s) | 95 |
| MspR9I | CCNGG | 1 cut(s) | 780 |
| Mva1269I | GAATGC | 1 cut(s) | 328 |
| MvaI | CCWGG | 1 cut(s) | 780 |
| MvnI | CGCG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 80, 845 |
| NdeI | CATATG | 1 cut(s) | 735 |
| NdeII | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| NlaIII | CATG | 5 cut(s) | 126, 133, 338, 986, 1112 |
| NlaIV | GGNNCC | 1 cut(s) | 216 |
| NmuCI | GTSAC | 2 cut(s) | 90, 978 |
| NsiI | ATGCAT | 1 cut(s) | 841 |
| NspI | RCATGY | 1 cut(s) | 126 |
| NspV | TTCGAA | 1 cut(s) | 280 |
| PceI | AGGCCT | 1 cut(s) | 789 |
| PciI | ACATGT | 1 cut(s) | 122 |
| PctI | GAATGC | 1 cut(s) | 328 |
| PdmI | GAANNNNTTC | 1 cut(s) | 326 |
| PfeI | GAWTC | 5 cut(s) | 101, 167, 240, 277, 577 |
| PkrI | GCNGC | 1 cut(s) | 1078 |
| PleI | GAGTC | 3 cut(s) | 147, 513, 769 |
| PpsI | GAGTC | 3 cut(s) | 147, 513, 769 |
| PscI | ACATGT | 1 cut(s) | 122 |
| PshBI | ATTAAT | 1 cut(s) | 650 |
| Psp6I | CCWGG | 1 cut(s) | 778 |
| PspGI | CCWGG | 1 cut(s) | 778 |
| PspN4I | GGNNCC | 1 cut(s) | 216 |
| PspPI | GGNCC | 1 cut(s) | 215 |
| PstNI | CAGNNNCTG | 1 cut(s) | 962 |
| PsuI | RGATCY | 2 cut(s) | 364, 1024 |
| RsaI | GTAC | 1 cut(s) | 764 |
| RsaNI | GTAC | 1 cut(s) | 763 |
| RseI | CAYNNNNRTG | 3 cut(s) | 204, 738, 816 |
| SaqAI | TTAA | 5 cut(s) | 318, 345, 479, 650, 1035 |
| SatI | GCNGC | 1 cut(s) | 1077 |
| Sau3AI | GATC | 7 cut(s) | 340, 364, 514, 601, 862, 869, 1024 |
| Sau96I | GGNCC | 1 cut(s) | 215 |
| SchI | GAGTC | 3 cut(s) | 148, 514, 769 |
| ScrFI | CCNGG | 1 cut(s) | 780 |
| SfaNI | GCATC | 1 cut(s) | 92 |
| SfuI | TTCGAA | 1 cut(s) | 280 |
| SinI | GGWCC | 1 cut(s) | 215 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 204, 738, 816 |
| SmlI | CTYRAG | 1 cut(s) | 344 |
| SmoI | CTYRAG | 1 cut(s) | 344 |
| Sse9I | AATT | 3 cut(s) | 651, 904, 1013 |
| SseBI | AGGCCT | 1 cut(s) | 789 |
| SspMI | CTAG | 4 cut(s) | 450, 723, 879, 945 |
| StuI | AGGCCT | 1 cut(s) | 789 |
| StyD4I | CCNGG | 1 cut(s) | 778 |
| TaaI | ACNGT | 1 cut(s) | 627 |
| TaqI | TCGA | 5 cut(s) | 48, 68, 280, 822, 865 |
| TasI | AATT | 3 cut(s) | 651, 904, 1013 |
| TfiI | GAWTC | 5 cut(s) | 101, 167, 240, 277, 577 |
| Tru1I | TTAA | 5 cut(s) | 318, 345, 479, 650, 1035 |
| Tru9I | TTAA | 5 cut(s) | 318, 345, 479, 650, 1035 |
| TscAI | CASTG | 2 cut(s) | 865, 1107 |
| TseFI | GTSAC | 2 cut(s) | 90, 978 |
| TseI | GCWGC | 1 cut(s) | 1076 |
| Tsp45I | GTSAC | 2 cut(s) | 90, 978 |
| TspDTI | ATGAA | 5 cut(s) | 141, 323, 497, 1049, 1067 |
| TspRI | CASTG | 2 cut(s) | 865, 1107 |
| Vha464I | CTTAAG | 1 cut(s) | 344 |
| VpaK11BI | GGWCC | 1 cut(s) | 215 |
| VspI | ATTAAT | 1 cut(s) | 650 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 783 |
| XbaI | TCTAGA | 1 cut(s) | 878 |
| XceI | RCATGY | 1 cut(s) | 126 |
| XmiI | GTMKAC | 1 cut(s) | 830 |
| XmnI | GAANNNNTTC | 1 cut(s) | 326 |
| XspI | CTAG | 4 cut(s) | 450, 723, 879, 945 |
| Zsp2I | ATGCAT | 1 cut(s) | 841 |