Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 28 - 88 | 4.4e-15 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 355 |
| AcoI | YGGCCR | 1 cut(s) | 119 |
| AcsI | RAATTY | 2 cut(s) | 54, 406 |
| AdeI | CACNNNGTG | 1 cut(s) | 535 |
| AfaI | GTAC | 1 cut(s) | 302 |
| AflII | CTTAAG | 1 cut(s) | 82 |
| AgsI | TTSAA | 3 cut(s) | 17, 170, 406 |
| AjnI | CCWGG | 1 cut(s) | 196 |
| AluBI | AGCT | 5 cut(s) | 20, 238, 373, 439, 521 |
| AluI | AGCT | 5 cut(s) | 20, 238, 373, 439, 521 |
| Alw26I | GTCTC | 1 cut(s) | 284 |
| AoxI | GGCC | 1 cut(s) | 119 |
| ApeKI | GCWGC | 2 cut(s) | 238, 373 |
| ApoI | RAATTY | 2 cut(s) | 54, 406 |
| AsuHPI | GGTGA | 1 cut(s) | 173 |
| AsuII | TTCGAA | 1 cut(s) | 52 |
| BalI | TGGCCA | 1 cut(s) | 121 |
| BbvI | GCAGC | 2 cut(s) | 225, 360 |
| BccI | CCATC | 1 cut(s) | 127 |
| BciT130I | CCWGG | 1 cut(s) | 198 |
| BciVI | GTATCC | 1 cut(s) | 611 |
| BcoDI | GTCTC | 1 cut(s) | 284 |
| BfrI | CTTAAG | 1 cut(s) | 82 |
| BfuAI | ACCTGC | 1 cut(s) | 355 |
| BfuI | GTATCC | 1 cut(s) | 611 |
| BisI | GCNGC | 2 cut(s) | 239, 374 |
| BlsI | GCNGC | 2 cut(s) | 240, 375 |
| Bme1390I | CCNGG | 1 cut(s) | 198 |
| BmrFI | CCNGG | 1 cut(s) | 198 |
| Bpu14I | TTCGAA | 1 cut(s) | 52 |
| BsaI | GGTCTC | 1 cut(s) | 284 |
| BseBI | CCWGG | 1 cut(s) | 198 |
| BseGI | GGATG | 2 cut(s) | 142, 202 |
| BseRI | GAGGAG | 1 cut(s) | 348 |
| BseXI | GCAGC | 2 cut(s) | 225, 360 |
| BsgI | GTGCAG | 1 cut(s) | 224 |
| BshFI | GGCC | 1 cut(s) | 121 |
| BsmAI | GTCTC | 1 cut(s) | 284 |
| BsnI | GGCC | 1 cut(s) | 121 |
| Bso31I | GGTCTC | 1 cut(s) | 284 |
| Bsp119I | TTCGAA | 1 cut(s) | 52 |
| Bsp143I | GATC | 2 cut(s) | 163, 310 |
| BspANI | GGCC | 1 cut(s) | 121 |
| BspHI | TCATGA | 1 cut(s) | 214 |
| BspMI | ACCTGC | 1 cut(s) | 355 |
| BspT104I | TTCGAA | 1 cut(s) | 52 |
| BspTI | CTTAAG | 1 cut(s) | 82 |
| BspTNI | GGTCTC | 1 cut(s) | 284 |
| BssMI | GATC | 2 cut(s) | 163, 310 |
| Bst2UI | CCWGG | 1 cut(s) | 198 |
| Bst6I | CTCTTC | 3 cut(s) | 165, 533, 568 |
| BstAFI | CTTAAG | 1 cut(s) | 82 |
| BstBI | TTCGAA | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 4 cut(s) | 236, 352, 371, 507 |
| BstF5I | GGATG | 2 cut(s) | 142, 202 |
| BstKTI | GATC | 2 cut(s) | 166, 313 |
| BstMAI | GTCTC | 1 cut(s) | 284 |
| BstMBI | GATC | 2 cut(s) | 163, 310 |
| BstNI | CCWGG | 1 cut(s) | 198 |
| BstNSI | RCATGY | 1 cut(s) | 509 |
| BstSCI | CCNGG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 2 cut(s) | 225, 360 |
| BsuI | GTATCC | 1 cut(s) | 611 |
| BsuRI | GGCC | 1 cut(s) | 121 |
| BtsCI | GGATG | 2 cut(s) | 142, 202 |
| BtsIMutI | CAGTG | 1 cut(s) | 621 |
| BveI | ACCTGC | 1 cut(s) | 355 |
| Cac8I | GCNNGC | 4 cut(s) | 236, 352, 371, 507 |
| CciI | TCATGA | 1 cut(s) | 214 |
| Csp6I | GTAC | 1 cut(s) | 301 |
| CviAII | CATG | 6 cut(s) | 26, 39, 158, 215, 502, 506 |
| CviJI | RGCY | 9 cut(s) | 20, 81, 121, 238, 263, 373, 397, 439, 521 |
| CviKI_1 | RGCY | 9 cut(s) | 20, 81, 121, 238, 263, 373, 397, 439, 521 |
| CviQI | GTAC | 1 cut(s) | 301 |
| DpnI | GATC | 2 cut(s) | 165, 312 |
| DpnII | GATC | 2 cut(s) | 163, 310 |
| DraIII | CACNNNGTG | 1 cut(s) | 535 |
| EaeI | YGGCCR | 1 cut(s) | 119 |
| Eam1104I | CTCTTC | 3 cut(s) | 165, 533, 568 |
| EarI | CTCTTC | 3 cut(s) | 165, 533, 568 |
| Eco31I | GGTCTC | 1 cut(s) | 284 |
| EcoRI | GAATTC | 1 cut(s) | 54 |
| EcoRII | CCWGG | 1 cut(s) | 196 |
| EcoT22I | ATGCAT | 1 cut(s) | 507 |
| FaeI | CATG | 6 cut(s) | 29, 42, 161, 218, 505, 509 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 382, 414 |
| FatI | CATG | 6 cut(s) | 25, 38, 157, 214, 501, 505 |
| Fnu4HI | GCNGC | 2 cut(s) | 239, 374 |
| FokI | GGATG | 2 cut(s) | 149, 189 |
| Fsp4HI | GCNGC | 2 cut(s) | 239, 374 |
| GluI | GCNGC | 2 cut(s) | 239, 374 |
| HaeIII | GGCC | 1 cut(s) | 121 |
| Hin1II | CATG | 6 cut(s) | 29, 42, 161, 218, 505, 509 |
| HincII | GTYRAC | 1 cut(s) | 109 |
| HindII | GTYRAC | 1 cut(s) | 109 |
| HindIII | AAGCTT | 1 cut(s) | 437 |
| HpaI | GTTAAC | 1 cut(s) | 109 |
| HphI | GGTGA | 1 cut(s) | 173 |
| Hpy166II | GTNNAC | 2 cut(s) | 109, 303 |
| Hpy188I | TCNGA | 1 cut(s) | 294 |
| Hpy188III | TCNNGA | 4 cut(s) | 167, 215, 362, 403 |
| Hpy8I | GTNNAC | 2 cut(s) | 109, 303 |
| HpyAV | CCTTC | 1 cut(s) | 160 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 234, 241, 319, 342, 376, 505 |
| Hsp92II | CATG | 6 cut(s) | 29, 42, 161, 218, 505, 509 |
| KspAI | GTTAAC | 1 cut(s) | 109 |
| Kzo9I | GATC | 2 cut(s) | 163, 310 |
| LmnI | GCTCC | 1 cut(s) | 514 |
| LpnPI | CCDG | 6 cut(s) | 143, 183, 210, 234, 360, 477 |
| Lsp1109I | GCAGC | 2 cut(s) | 225, 360 |
| MalI | GATC | 2 cut(s) | 165, 312 |
| MboI | GATC | 2 cut(s) | 163, 310 |
| MboII | GAAGA | 4 cut(s) | 182, 518, 550, 585 |
| MlsI | TGGCCA | 1 cut(s) | 121 |
| MluCI | AATT | 5 cut(s) | 54, 188, 406, 497, 543 |
| MluNI | TGGCCA | 1 cut(s) | 121 |
| MmeI | TCCRAC | 2 cut(s) | 536, 550 |
| MnlI | CCTC | 7 cut(s) | 166, 204, 216, 328, 369, 424, 569 |
| Mox20I | TGGCCA | 1 cut(s) | 121 |
| Mph1103I | ATGCAT | 1 cut(s) | 507 |
| MscI | TGGCCA | 1 cut(s) | 121 |
| MseI | TTAA | 5 cut(s) | 83, 108, 381, 389, 410 |
| Msp20I | TGGCCA | 1 cut(s) | 121 |
| MspCI | CTTAAG | 1 cut(s) | 82 |
| MspR9I | CCNGG | 1 cut(s) | 198 |
| MvaI | CCWGG | 1 cut(s) | 198 |
| NdeII | GATC | 2 cut(s) | 163, 310 |
| NlaIII | CATG | 6 cut(s) | 29, 42, 161, 218, 505, 509 |
| NsiI | ATGCAT | 1 cut(s) | 507 |
| NspI | RCATGY | 1 cut(s) | 509 |
| NspV | TTCGAA | 1 cut(s) | 52 |
| PaeI | GCATGC | 1 cut(s) | 509 |
| PagI | TCATGA | 1 cut(s) | 214 |
| PkrI | GCNGC | 2 cut(s) | 240, 375 |
| Psp6I | CCWGG | 1 cut(s) | 196 |
| PspGI | CCWGG | 1 cut(s) | 196 |
| RsaI | GTAC | 1 cut(s) | 302 |
| RsaNI | GTAC | 1 cut(s) | 301 |
| SaqAI | TTAA | 5 cut(s) | 83, 108, 381, 389, 410 |
| SatI | GCNGC | 2 cut(s) | 239, 374 |
| Sau3AI | GATC | 2 cut(s) | 163, 310 |
| ScrFI | CCNGG | 1 cut(s) | 198 |
| SfuI | TTCGAA | 1 cut(s) | 52 |
| SmlI | CTYRAG | 1 cut(s) | 82 |
| SmoI | CTYRAG | 1 cut(s) | 82 |
| SphI | GCATGC | 1 cut(s) | 509 |
| Sse9I | AATT | 5 cut(s) | 54, 188, 406, 497, 543 |
| StyD4I | CCNGG | 1 cut(s) | 196 |
| TaqI | TCGA | 1 cut(s) | 52 |
| TasI | AATT | 5 cut(s) | 54, 188, 406, 497, 543 |
| TatI | WGTACW | 1 cut(s) | 300 |
| Tru1I | TTAA | 5 cut(s) | 83, 108, 381, 389, 410 |
| Tru9I | TTAA | 5 cut(s) | 83, 108, 381, 389, 410 |
| TscAI | CASTG | 1 cut(s) | 628 |
| TseI | GCWGC | 2 cut(s) | 238, 373 |
| TspDTI | ATGAA | 5 cut(s) | 24, 200, 270, 490, 602 |
| TspRI | CASTG | 1 cut(s) | 628 |
| Vha464I | CTTAAG | 1 cut(s) | 82 |
| XapI | RAATTY | 2 cut(s) | 54, 406 |
| XceI | RCATGY | 1 cut(s) | 509 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 256 |
| Zsp2I | ATGCAT | 1 cut(s) | 507 |