Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 72 - 207 | 6.9e-33 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 812 |
| AciI | CCGC | 3 cut(s) | 352, 680, 688 |
| AclWI | GGATC | 1 cut(s) | 166 |
| AcvI | CACGTG | 1 cut(s) | 320 |
| AdeI | CACNNNGTG | 1 cut(s) | 320 |
| AfaI | GTAC | 5 cut(s) | 173, 227, 542, 701, 729 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 722 |
| AflII | CTTAAG | 1 cut(s) | 536 |
| AflIII | ACRYGT | 1 cut(s) | 71 |
| AgsI | TTSAA | 1 cut(s) | 706 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 808 |
| AjnI | CCWGG | 4 cut(s) | 241, 262, 563, 715 |
| AluBI | AGCT | 4 cut(s) | 425, 499, 535, 713 |
| AluI | AGCT | 4 cut(s) | 425, 499, 535, 713 |
| Alw26I | GTCTC | 2 cut(s) | 308, 617 |
| AlwI | GGATC | 1 cut(s) | 166 |
| AoxI | GGCC | 1 cut(s) | 786 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 58, 90 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 337 |
| AspS9I | GGNCC | 1 cut(s) | 786 |
| AsuHPI | GGTGA | 4 cut(s) | 53, 306, 542, 649 |
| AsuNHI | GCTAGC | 1 cut(s) | 499 |
| BauI | CACGAG | 1 cut(s) | 138 |
| BbrPI | CACGTG | 1 cut(s) | 320 |
| BccI | CCATC | 1 cut(s) | 472 |
| BciT130I | CCWGG | 4 cut(s) | 243, 264, 565, 717 |
| BcoDI | GTCTC | 2 cut(s) | 308, 617 |
| BfaI | CTAG | 1 cut(s) | 500 |
| BfmI | CTRYAG | 1 cut(s) | 277 |
| BfrI | CTTAAG | 1 cut(s) | 536 |
| BmcAI | AGTACT | 3 cut(s) | 542, 701, 729 |
| Bme1390I | CCNGG | 4 cut(s) | 243, 264, 565, 717 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 808 |
| BmgT120I | GGNCC | 1 cut(s) | 786 |
| BmrFI | CCNGG | 4 cut(s) | 243, 264, 565, 717 |
| BmsI | GCATC | 3 cut(s) | 412, 667, 766 |
| BmtI | GCTAGC | 1 cut(s) | 503 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 277, 309 |
| BpmI | CTGGAG | 1 cut(s) | 699 |
| BpuEI | CTTGAG | 3 cut(s) | 383, 680, 776 |
| BsaAI | YACGTR | 1 cut(s) | 320 |
| BsaI | GGTCTC | 1 cut(s) | 308 |
| BsaJI | CCNNGG | 3 cut(s) | 216, 242, 564 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 722 |
| Bse1I | ACTGG | 1 cut(s) | 463 |
| BseBI | CCWGG | 4 cut(s) | 243, 264, 565, 717 |
| BseDI | CCNNGG | 3 cut(s) | 216, 242, 564 |
| BseGI | GGATG | 2 cut(s) | 448, 682 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 722 |
| BseMII | CTCAG | 3 cut(s) | 218, 393, 498 |
| BseNI | ACTGG | 1 cut(s) | 463 |
| BseRI | GAGGAG | 1 cut(s) | 738 |
| BshFI | GGCC | 1 cut(s) | 788 |
| BsiSI | CCGG | 1 cut(s) | 789 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 722 |
| BsmAI | GTCTC | 2 cut(s) | 308, 617 |
| BsnI | GGCC | 1 cut(s) | 788 |
| Bso31I | GGTCTC | 1 cut(s) | 308 |
| Bsp1407I | TGTACA | 1 cut(s) | 225 |
| Bsp143I | GATC | 1 cut(s) | 158 |
| BspACI | CCGC | 3 cut(s) | 352, 680, 688 |
| BspANI | GGCC | 1 cut(s) | 788 |
| BspCNI | CTCAG | 3 cut(s) | 217, 392, 499 |
| BspOI | GCTAGC | 1 cut(s) | 503 |
| BspPI | GGATC | 1 cut(s) | 166 |
| BspTI | CTTAAG | 1 cut(s) | 536 |
| BspTNI | GGTCTC | 1 cut(s) | 308 |
| BsrGI | TGTACA | 1 cut(s) | 225 |
| BsrI | ACTGG | 1 cut(s) | 463 |
| BssECI | CCNNGG | 3 cut(s) | 216, 242, 564 |
| BssMI | GATC | 1 cut(s) | 158 |
| BssSI | CACGAG | 1 cut(s) | 138 |
| Bst2BI | CACGAG | 1 cut(s) | 138 |
| Bst2UI | CCWGG | 4 cut(s) | 243, 264, 565, 717 |
| Bst4CI | ACNGT | 5 cut(s) | 119, 312, 472, 628, 732 |
| Bst6I | CTCTTC | 2 cut(s) | 715, 854 |
| BstAFI | CTTAAG | 1 cut(s) | 536 |
| BstAUI | TGTACA | 1 cut(s) | 225 |
| BstBAI | YACGTR | 1 cut(s) | 320 |
| BstC8I | GCNNGC | 2 cut(s) | 181, 501 |
| BstDEI | CTNAG | 5 cut(s) | 204, 379, 507, 526, 547 |
| BstF5I | GGATG | 2 cut(s) | 448, 682 |
| BstKTI | GATC | 1 cut(s) | 161 |
| BstMAI | GTCTC | 2 cut(s) | 308, 617 |
| BstMBI | GATC | 1 cut(s) | 158 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 496, 785 |
| BstNI | CCWGG | 4 cut(s) | 243, 264, 565, 717 |
| BstNSI | RCATGY | 1 cut(s) | 75 |
| BstSCI | CCNGG | 4 cut(s) | 241, 262, 563, 715 |
| BstSFI | CTRYAG | 1 cut(s) | 277 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 324 |
| BsuRI | GGCC | 1 cut(s) | 788 |
| BtsCI | GGATG | 2 cut(s) | 448, 682 |
| BtsIMutI | CAGTG | 3 cut(s) | 168, 456, 633 |
| Cac8I | GCNNGC | 2 cut(s) | 181, 501 |
| Cfr13I | GGNCC | 1 cut(s) | 786 |
| Csp6I | GTAC | 5 cut(s) | 172, 226, 541, 700, 728 |
| CviAII | CATG | 6 cut(s) | 23, 72, 229, 649, 673, 855 |
| CviJI | RGCY | 9 cut(s) | 234, 425, 499, 503, 535, 563, 713, 768, 788 |
| CviKI_1 | RGCY | 9 cut(s) | 234, 425, 499, 503, 535, 563, 713, 768, 788 |
| CviQI | GTAC | 5 cut(s) | 172, 226, 541, 700, 728 |
| DdeI | CTNAG | 5 cut(s) | 204, 379, 507, 526, 547 |
| DpnI | GATC | 1 cut(s) | 160 |
| DpnII | GATC | 1 cut(s) | 158 |
| DraIII | CACNNNGTG | 1 cut(s) | 320 |
| DriI | GACNNNNNGTC | 1 cut(s) | 808 |
| Eam1104I | CTCTTC | 2 cut(s) | 715, 854 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 808 |
| EarI | CTCTTC | 2 cut(s) | 715, 854 |
| Eco31I | GGTCTC | 1 cut(s) | 308 |
| Eco72I | CACGTG | 1 cut(s) | 320 |
| EcoRII | CCWGG | 4 cut(s) | 241, 262, 563, 715 |
| EcoT22I | ATGCAT | 2 cut(s) | 654, 781 |
| FaeI | CATG | 6 cut(s) | 26, 75, 232, 652, 676, 858 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 168, 200, 530, 562 |
| FatI | CATG | 6 cut(s) | 22, 71, 228, 648, 672, 854 |
| FauNDI | CATATG | 1 cut(s) | 211 |
| FblI | GTMKAC | 1 cut(s) | 812 |
| FokI | GGATG | 2 cut(s) | 455, 689 |
| FspBI | CTAG | 1 cut(s) | 500 |
| GsuI | CTGGAG | 1 cut(s) | 699 |
| HaeIII | GGCC | 1 cut(s) | 788 |
| HapII | CCGG | 1 cut(s) | 789 |
| Hin1II | CATG | 6 cut(s) | 26, 75, 232, 652, 676, 858 |
| HincII | GTYRAC | 1 cut(s) | 813 |
| HindII | GTYRAC | 1 cut(s) | 813 |
| HinfI | GANTC | 7 cut(s) | 136, 166, 453, 579, 640, 667, 691 |
| HpaII | CCGG | 1 cut(s) | 789 |
| HphI | GGTGA | 4 cut(s) | 53, 306, 542, 649 |
| Hpy166II | GTNNAC | 5 cut(s) | 61, 77, 201, 226, 813 |
| Hpy188I | TCNGA | 5 cut(s) | 106, 207, 382, 508, 660 |
| Hpy188III | TCNNGA | 2 cut(s) | 608, 755 |
| Hpy8I | GTNNAC | 5 cut(s) | 61, 77, 201, 226, 813 |
| HpyAV | CCTTC | 6 cut(s) | 245, 349, 409, 514, 569, 801 |
| HpyCH4III | ACNGT | 5 cut(s) | 119, 312, 472, 628, 732 |
| HpyCH4IV | ACGT | 1 cut(s) | 319 |
| HpyCH4V | TGCA | 3 cut(s) | 490, 652, 779 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 496, 785 |
| HpyF3I | CTNAG | 5 cut(s) | 204, 379, 507, 526, 547 |
| HpySE526I | ACGT | 1 cut(s) | 319 |
| Hsp92II | CATG | 6 cut(s) | 26, 75, 232, 652, 676, 858 |
| Kzo9I | GATC | 1 cut(s) | 158 |
| LmnI | GCTCC | 1 cut(s) | 718 |
| LweI | GCATC | 3 cut(s) | 412, 667, 766 |
| MaeI | CTAG | 1 cut(s) | 500 |
| MaeII | ACGT | 1 cut(s) | 319 |
| MaeIII | GTNAC | 5 cut(s) | 312, 418, 668, 821, 850 |
| MalI | GATC | 1 cut(s) | 160 |
| MboI | GATC | 1 cut(s) | 158 |
| MboII | GAAGA | 3 cut(s) | 345, 732, 871 |
| MluCI | AATT | 4 cut(s) | 268, 344, 429, 552 |
| MlyI | GAGTC | 3 cut(s) | 130, 649, 676 |
| MnlI | CCTC | 7 cut(s) | 211, 514, 550, 588, 716, 751, 833 |
| Mph1103I | ATGCAT | 2 cut(s) | 654, 781 |
| MroXI | GAANNNNTTC | 1 cut(s) | 337 |
| MseI | TTAA | 3 cut(s) | 18, 153, 537 |
| MslI | CAYNNNNRTG | 1 cut(s) | 675 |
| MspCI | CTTAAG | 1 cut(s) | 536 |
| MspI | CCGG | 1 cut(s) | 789 |
| MspR9I | CCNGG | 4 cut(s) | 243, 264, 565, 717 |
| MvaI | CCWGG | 4 cut(s) | 243, 264, 565, 717 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 496, 785 |
| NdeI | CATATG | 1 cut(s) | 211 |
| NdeII | GATC | 1 cut(s) | 158 |
| NheI | GCTAGC | 1 cut(s) | 499 |
| NlaIII | CATG | 6 cut(s) | 26, 75, 232, 652, 676, 858 |
| NmeAIII | GCCGAG | 1 cut(s) | 241 |
| NmuCI | GTSAC | 2 cut(s) | 312, 668 |
| NsiI | ATGCAT | 2 cut(s) | 654, 781 |
| NspI | RCATGY | 1 cut(s) | 75 |
| PciI | ACATGT | 1 cut(s) | 71 |
| PdmI | GAANNNNTTC | 1 cut(s) | 337 |
| PfeI | GAWTC | 4 cut(s) | 166, 453, 579, 691 |
| PfoI | TCCNGGA | 1 cut(s) | 715 |
| PleI | GAGTC | 3 cut(s) | 130, 648, 675 |
| PmaCI | CACGTG | 1 cut(s) | 320 |
| PmlI | CACGTG | 1 cut(s) | 320 |
| PpsI | GAGTC | 3 cut(s) | 130, 648, 675 |
| Ppu21I | YACGTR | 1 cut(s) | 320 |
| PscI | ACATGT | 1 cut(s) | 71 |
| Psp6I | CCWGG | 4 cut(s) | 241, 262, 563, 715 |
| PspCI | CACGTG | 1 cut(s) | 320 |
| PspGI | CCWGG | 4 cut(s) | 241, 262, 563, 715 |
| PspPI | GGNCC | 1 cut(s) | 786 |
| RsaI | GTAC | 5 cut(s) | 173, 227, 542, 701, 729 |
| RsaNI | GTAC | 5 cut(s) | 172, 226, 541, 700, 728 |
| RseI | CAYNNNNRTG | 1 cut(s) | 675 |
| SalI | GTCGAC | 1 cut(s) | 811 |
| SaqAI | TTAA | 3 cut(s) | 18, 153, 537 |
| Sau3AI | GATC | 1 cut(s) | 158 |
| Sau96I | GGNCC | 1 cut(s) | 786 |
| ScaI | AGTACT | 3 cut(s) | 542, 701, 729 |
| SchI | GAGTC | 3 cut(s) | 130, 649, 676 |
| ScrFI | CCNGG | 4 cut(s) | 243, 264, 565, 717 |
| SfaNI | GCATC | 3 cut(s) | 412, 667, 766 |
| SfcI | CTRYAG | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 675 |
| SmlI | CTYRAG | 4 cut(s) | 398, 536, 695, 755 |
| SmoI | CTYRAG | 4 cut(s) | 398, 536, 695, 755 |
| Sse9I | AATT | 4 cut(s) | 268, 344, 429, 552 |
| SsiI | CCGC | 3 cut(s) | 352, 680, 688 |
| SspMI | CTAG | 1 cut(s) | 500 |
| StyD4I | CCNGG | 4 cut(s) | 241, 262, 563, 715 |
| TaaI | ACNGT | 5 cut(s) | 119, 312, 472, 628, 732 |
| TaiI | ACGT | 1 cut(s) | 322 |
| TaqI | TCGA | 1 cut(s) | 812 |
| TasI | AATT | 4 cut(s) | 268, 344, 429, 552 |
| TatI | WGTACW | 4 cut(s) | 225, 540, 699, 727 |
| TfiI | GAWTC | 4 cut(s) | 166, 453, 579, 691 |
| Tru1I | TTAA | 3 cut(s) | 18, 153, 537 |
| Tru9I | TTAA | 3 cut(s) | 18, 153, 537 |
| TscAI | CASTG | 3 cut(s) | 168, 463, 633 |
| TseFI | GTSAC | 2 cut(s) | 312, 668 |
| Tsp45I | GTSAC | 2 cut(s) | 312, 668 |
| TspDTI | ATGAA | 2 cut(s) | 533, 637 |
| TspRI | CASTG | 3 cut(s) | 168, 463, 633 |
| Vha464I | CTTAAG | 1 cut(s) | 536 |
| XceI | RCATGY | 1 cut(s) | 75 |
| XmiI | GTMKAC | 1 cut(s) | 812 |
| XmnI | GAANNNNTTC | 1 cut(s) | 337 |
| XspI | CTAG | 1 cut(s) | 500 |
| ZrmI | AGTACT | 3 cut(s) | 542, 701, 729 |
| Zsp2I | ATGCAT | 2 cut(s) | 654, 781 |