Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 110, 230 |
| AcoI | YGGCCR | 1 cut(s) | 96 |
| AcsI | RAATTY | 1 cut(s) | 271 |
| AfaI | GTAC | 4 cut(s) | 30, 72, 80, 256 |
| AflIII | ACRYGT | 1 cut(s) | 142 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 84, 116 |
| AluBI | AGCT | 3 cut(s) | 8, 265, 311 |
| AluI | AGCT | 3 cut(s) | 8, 265, 311 |
| Alw21I | GWGCWC | 1 cut(s) | 156 |
| Alw26I | GTCTC | 1 cut(s) | 196 |
| Alw44I | GTGCAC | 1 cut(s) | 152 |
| AoxI | GGCC | 1 cut(s) | 96 |
| ApaLI | GTGCAC | 1 cut(s) | 152 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ApoI | RAATTY | 1 cut(s) | 271 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 177, 273 |
| BaeGI | GKGCMC | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 156 |
| BbvI | GCAGC | 1 cut(s) | 17 |
| BclI | TGATCA | 1 cut(s) | 220 |
| BcoDI | GTCTC | 1 cut(s) | 196 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlpI | GCTNAGC | 1 cut(s) | 287 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 287 |
| BsaBI | GATNNNNATC | 1 cut(s) | 48 |
| Bse1I | ACTGG | 2 cut(s) | 56, 68 |
| Bse8I | GATNNNNATC | 1 cut(s) | 48 |
| BseJI | GATNNNNATC | 1 cut(s) | 48 |
| BseMII | CTCAG | 1 cut(s) | 301 |
| BseNI | ACTGG | 2 cut(s) | 56, 68 |
| BseSI | GKGCMC | 1 cut(s) | 156 |
| BseXI | GCAGC | 1 cut(s) | 17 |
| BshFI | GGCC | 1 cut(s) | 98 |
| BsiHKAI | GWGCWC | 1 cut(s) | 156 |
| BsmAI | GTCTC | 1 cut(s) | 196 |
| BsnI | GGCC | 1 cut(s) | 98 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| Bsp143I | GATC | 2 cut(s) | 43, 220 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 287 |
| BspACI | CCGC | 2 cut(s) | 110, 230 |
| BspANI | GGCC | 1 cut(s) | 98 |
| BspCNI | CTCAG | 1 cut(s) | 300 |
| BsrI | ACTGG | 2 cut(s) | 56, 68 |
| BssMI | GATC | 2 cut(s) | 43, 220 |
| Bst4CI | ACNGT | 3 cut(s) | 33, 83, 295 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 1 cut(s) | 263 |
| BstDEI | CTNAG | 1 cut(s) | 287 |
| BstKTI | GATC | 2 cut(s) | 46, 223 |
| BstMAI | GTCTC | 1 cut(s) | 196 |
| BstMBI | GATC | 2 cut(s) | 43, 220 |
| BstNSI | RCATGY | 1 cut(s) | 146 |
| BstSLI | GKGCMC | 1 cut(s) | 156 |
| BstV1I | GCAGC | 1 cut(s) | 17 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 106 |
| BsuRI | GGCC | 1 cut(s) | 98 |
| BtsIMutI | CAGTG | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 1 cut(s) | 263 |
| Csp6I | GTAC | 4 cut(s) | 29, 71, 79, 255 |
| CviAII | CATG | 2 cut(s) | 128, 143 |
| CviJI | RGCY | 5 cut(s) | 8, 25, 98, 265, 311 |
| CviKI_1 | RGCY | 5 cut(s) | 8, 25, 98, 265, 311 |
| CviQI | GTAC | 4 cut(s) | 29, 71, 79, 255 |
| DdeI | CTNAG | 1 cut(s) | 287 |
| DpnI | GATC | 2 cut(s) | 45, 222 |
| DpnII | GATC | 2 cut(s) | 43, 220 |
| EaeI | YGGCCR | 1 cut(s) | 96 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| EciI | GGCGGA | 1 cut(s) | 125 |
| FaeI | CATG | 2 cut(s) | 131, 146 |
| FaiI | YATR | 3 cut(s) | 22, 129, 144 |
| FatI | CATG | 2 cut(s) | 127, 142 |
| FbaI | TGATCA | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| GluI | GCNGC | 1 cut(s) | 6 |
| HaeIII | GGCC | 1 cut(s) | 98 |
| Hin1II | CATG | 2 cut(s) | 131, 146 |
| Hpy166II | GTNNAC | 2 cut(s) | 154, 240 |
| Hpy188I | TCNGA | 1 cut(s) | 170 |
| Hpy188III | TCNNGA | 2 cut(s) | 11, 211 |
| Hpy8I | GTNNAC | 2 cut(s) | 154, 240 |
| HpyCH4III | ACNGT | 3 cut(s) | 33, 83, 295 |
| HpyCH4V | TGCA | 3 cut(s) | 131, 154, 298 |
| HpyF3I | CTNAG | 1 cut(s) | 287 |
| Hsp92II | CATG | 2 cut(s) | 131, 146 |
| Ksp22I | TGATCA | 1 cut(s) | 220 |
| Kzo9I | GATC | 2 cut(s) | 43, 220 |
| LpnPI | CCDG | 4 cut(s) | 11, 69, 81, 243 |
| Lsp1109I | GCAGC | 1 cut(s) | 17 |
| MalI | GATC | 2 cut(s) | 45, 222 |
| MboI | GATC | 2 cut(s) | 43, 220 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MluCI | AATT | 1 cut(s) | 271 |
| MnlI | CCTC | 1 cut(s) | 313 |
| MroXI | GAANNNNTTC | 2 cut(s) | 177, 273 |
| MseI | TTAA | 1 cut(s) | 251 |
| NdeII | GATC | 2 cut(s) | 43, 220 |
| NlaIII | CATG | 2 cut(s) | 131, 146 |
| NspI | RCATGY | 1 cut(s) | 146 |
| PciI | ACATGT | 1 cut(s) | 142 |
| PdmI | GAANNNNTTC | 2 cut(s) | 177, 273 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PscI | ACATGT | 1 cut(s) | 142 |
| RsaI | GTAC | 4 cut(s) | 30, 72, 80, 256 |
| RsaNI | GTAC | 4 cut(s) | 29, 71, 79, 255 |
| SaqAI | TTAA | 1 cut(s) | 251 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 2 cut(s) | 43, 220 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SetI | ASST | 3 cut(s) | 10, 267, 313 |
| SmlI | CTYRAG | 1 cut(s) | 9 |
| SmoI | CTYRAG | 1 cut(s) | 9 |
| Sse9I | AATT | 1 cut(s) | 271 |
| SsiI | CCGC | 2 cut(s) | 110, 230 |
| TaaI | ACNGT | 3 cut(s) | 33, 83, 295 |
| TaqI | TCGA | 1 cut(s) | 267 |
| TasI | AATT | 1 cut(s) | 271 |
| TatI | WGTACW | 2 cut(s) | 78, 254 |
| Tru1I | TTAA | 1 cut(s) | 251 |
| Tru9I | TTAA | 1 cut(s) | 251 |
| TscAI | CASTG | 1 cut(s) | 300 |
| TseI | GCWGC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 1 cut(s) | 116 |
| TspRI | CASTG | 1 cut(s) | 300 |
| VneI | GTGCAC | 1 cut(s) | 152 |
| XapI | RAATTY | 1 cut(s) | 271 |
| XceI | RCATGY | 1 cut(s) | 146 |
| XmnI | GAANNNNTTC | 2 cut(s) | 177, 273 |