Rw3G026470

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000071
Physical Location & Seq
Forward (+)
36354647 .. 36358005
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026470.1

Sequence Viewer

Length: 2103 bp
ATGGCTTTAAAGGTTTCTACTTTTGTTGGTTCTGATACATGGATTATTGATTCTGGTGCCTCCGATCATATGACTTATGACAAATCATATTTTACTGAATTGTCTTCCCCACCAGTGTCCTATGTAATTAATGCCAATGGTGAGGCATTTCCTGTGTTAGGGTCAGGGTCAGATCTTCTCACCAAGGAGATAATTGGTCGGGGGTATCTGAGGGGCAGGTTGTTCCATCTGGATCAGGCATACGCAGGAGAGAAACCAGGAGCACAGTCCCGCGCCGCTTTGACTTCGACTTTTCAAACTTTTCGTACTCTTGTTCAAACACAATACCATAGCACCATTAAAGTCCTTCGGTCTGACAATGGGGGGGAATATGTTAATCACGTTTTCCAAGAGTTTTTTACAACCACTGGGATTGTTCACCAAACTACATGTCCACAAACACCAGAACAAAATGGCAAGGGATACAAGTGCTATCATCCACCTTCCAGGAAGTACTATGTCACTATGGACGTTACCTTCTTTGAGGACATGAGTTATTTTTCCTCTTCAGATACAACTCTTCAGGGGGAGAATTCATATTTTGAAGAGCTGTATCATGGAGAGGGGGAAGAAACAGAAGGAGGAGAGGAAGAAGTCACACAAACAGGAGGTATTTTGACGGATCCAGCTGAGACCATAAGCTCGCCACCTCTTGAAGCAGTAGCTCCAAGCATCCAGGCACCAGTTTCTATGGCTGAAAATGAAGTTGAAGACCCTCCTACCCCTCCTGCCATCGCTTCTACCCCTGACCCACAGCTTCCTGGTACGGAAGATCACTCATTTGAGGTATGTCCACCCACTAGTAGTAGTAGTAGTGAGTCTAGTGTTGAGAAATATGTGTTACCAAATAGGACCACTCGGGGTCAATCAGTCAAAAGATATGAACATATTCTTACTGCCAAATCAAAATACCCAGTAGCTAATTATATGTCCACTAGGAGATTGTCTAAGTCATATGAATCATTTGTGAATCATATATCTGCTGTATCAGTACCTAACAAAGTGCAAGATGCGTTGGGGGATCCAAAGTGGAGGAAGGCAATGGAGGAAGAGATGGAGGCGTTGCAGAAGAACAACACTTGGCAACTTGTGCCTCCACCACAAGGCAAGAAGGCTGTAGGTTGTCGTTGGGTGTTTACTGTGAAACATAATGCAGATGGATCAGTGAATCGGTACAAAGCACGCCTTGTAGCAAAGAGGGAAGGTATAACAGCTCTAATTATTTATGTGGATGATATGGTAATCACTGGTAATGATACTGTTGAGATGGATAGACTGCAGAGACAGCTAGCCTCTGAGTTTGAGATGAAGGACTTAGGTGAGCTTAAGTACTTCTTAGGAATTGAGGTAGCCAGGGGGAGAGAAGGAATCTATCTGTGCCAGAGGAAGTATGTTCTTGACTTGCTGACAGAGACAGGTTTGTTGGATTGCAGACCTATTGACACTCCTATTGAGCAGAACCATTGTTTAGCTGAGTATCCAGATCAGGTACCCACTGATCGAGCTCGCTATCAGAGGTTAGTTGGGCACTTGATTTATTTGGCTCATACTAGACCAGACGTTGCATATGCAGTGAGTGTGGTGATTTGTGGCTTCACAGATGCAGATTGGGCTGGAAATATCACAGACAGGAGATCGACATCAGGTTACTTTACCTTTGTGGGAGGTAATCTGGTTACATGGAAGAGTAAGAAACAGAAGGTTGTGGCACGTTCTAGTGCTGAGGCCGAGTATAGAGGTATGGCTCACGGAGTGTGTGAATTGTTGTGGCTGAGAAATCTGTTACGTGATCTGGGTTTCAAACTCAAAAATTCCATGCAGTTGTATTGTGATAACAAGGCAGCTATTGACATATCACAGAATCCAGTACAGCATGATCGTACTAAACATGTGGAGGTTGATCGTCACTTCATAAAGGAGAAGCTAGATGCCAAAATTATTAGTTTTCCTTTTGTTCCAACTGAAGAGCAACTTGCAGATGTACTTACCAAAGGAGTTTCCAGGAAGGCATTTTATGACTCACTTAGCAAGTTGGGCATGGTTGATGTATATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

700

Amino Acids

78.35

Weight (kDa)

5.72

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 14 - 57 3.5e-08 Pol polyprotein, beta-barrel domain
rve PF00665 93 - 148 7.1e-06 Integrase core domain
SH3_retrovirus PF25597 150 - 184 1.1e-06 Retroviral polymerase SH3-like domain
RVT_2 PF07727 371 - 412 3e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 420 - 498 1.7e-18 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
Acc65I GGTACC 1 cut(s) 1528
AccB1I GGYRCC 3 cut(s) 56, 718, 1528
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 271, 276
AclWI GGATC 6 cut(s) 240, 656, 669, 1055, 1068, 1207
AcsI RAATTY 2 cut(s) 571, 1849
AcuI CTGAAG 3 cut(s) 531, 545, 2022
AdeI CACNNNGTG 1 cut(s) 1792
AfiI CCNNNNNNNGG 2 cut(s) 158, 1142
AflII CTTAAG 1 cut(s) 1364
AflIII ACRYGT 2 cut(s) 428, 1927
AgsI TTSAA 6 cut(s) 296, 317, 584, 695, 749, 1840
AhlI ACTAGT 1 cut(s) 839
AjnI CCWGG 6 cut(s) 256, 485, 714, 799, 1391, 2039
Alw21I GWGCWC 2 cut(s) 265, 1546
Alw26I GTCTC 3 cut(s) 665, 1315, 1445
AlwI GGATC 6 cut(s) 240, 656, 669, 1055, 1068, 1207
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 1 cut(s) 1764
ApeKI GCWGC 1 cut(s) 1880
ApoI RAATTY 2 cut(s) 571, 1849
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 927
Asp718I GGTACC 1 cut(s) 1528
AspLEI GCGC 2 cut(s) 275, 2095
AspS9I GGNCC 1 cut(s) 891
AsuHPI GGTGA 5 cut(s) 152, 172, 410, 1370, 1633
AsuNHI GCTAGC 1 cut(s) 1327
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 1 cut(s) 891
BaeGI GKGCMC 1 cut(s) 1569
BamHI GGATCC 2 cut(s) 661, 1060
BanI GGYRCC 3 cut(s) 56, 718, 1528
BanII GRGCYC 1 cut(s) 1546
BbsI GAAGAC 2 cut(s) 96, 756
Bbv12I GWGCWC 2 cut(s) 265, 1546
BbvCI CCTCAGC 1 cut(s) 1761
BbvI GCAGC 1 cut(s) 1892
BccI CCATC 5 cut(s) 234, 779, 1087, 1190, 1300
BciT130I CCWGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
BciVI GTATCC 2 cut(s) 455, 1527
BcoDI GTCTC 3 cut(s) 665, 1315, 1445
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 7 cut(s) 840, 861, 975, 1328, 1590, 1755, 1964
BfmI CTRYAG 2 cut(s) 1155, 1316
BfrI CTTAAG 1 cut(s) 1364
BfuAI ACCTGC 1 cut(s) 207
BfuI GTATCC 2 cut(s) 455, 1527
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 276, 1881
BlsI GCNGC 2 cut(s) 277, 1882
BmcAI AGTACT 2 cut(s) 494, 1370
Bme1390I CCNGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
Bme18I GGWCC 1 cut(s) 891
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 1 cut(s) 891
BmiI GGNNCC 5 cut(s) 58, 663, 720, 1062, 1530
BmrFI CCNGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
BmrI ACTGGG 2 cut(s) 417, 947
BmsI GCATC 4 cut(s) 720, 1039, 1630, 1957
BmtI GCTAGC 1 cut(s) 1331
BmuI ACTGGG 2 cut(s) 417, 947
BpiI GAAGAC 2 cut(s) 96, 756
Bpu10I CCTNAGC 1 cut(s) 1761
BsaAI YACGTR 1 cut(s) 1826
BsaBI GATNNNNATC 1 cut(s) 1678
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 183, 1392
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 1142
Bse1I ACTGG 6 cut(s) 113, 412, 722, 953, 1291, 1904
Bse3DI GCAATG 1 cut(s) 1086
Bse8I GATNNNNATC 1 cut(s) 1678
BseBI CCWGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
BseDI CCNNGG 2 cut(s) 183, 1392
BseGI GGATG 3 cut(s) 475, 711, 1276
BseJI GATNNNNATC 1 cut(s) 1678
BseLI CCNNNNNNNGG 2 cut(s) 158, 1142
BseMI GCAATG 1 cut(s) 1086
BseMII CTCAG 6 cut(s) 200, 660, 1326, 1503, 1752, 1802
BseNI ACTGG 6 cut(s) 113, 412, 722, 953, 1291, 1904
BseRI GAGGAG 1 cut(s) 636
BseSI GKGCMC 1 cut(s) 1569
BseXI GCAGC 1 cut(s) 1892
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 1766
BshNI GGYRCC 3 cut(s) 56, 718, 1528
BsiHKAI GWGCWC 2 cut(s) 265, 1546
BsiHKCI CYCGRG 1 cut(s) 897
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 158, 1142
BsmAI GTCTC 3 cut(s) 665, 1315, 1445
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 1766
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 897
Bsp1286I GDGCHC 3 cut(s) 265, 1546, 1569
BspACI CCGC 2 cut(s) 271, 276
BspANI GGCC 1 cut(s) 1766
BspCNI CTCAG 6 cut(s) 201, 661, 1327, 1504, 1753, 1803
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 58, 663, 720, 1062, 1530
BspMAI CTGCAG 1 cut(s) 1320
BspMI ACCTGC 1 cut(s) 207
BspOI GCTAGC 1 cut(s) 1331
BspPI GGATC 6 cut(s) 240, 656, 669, 1055, 1068, 1207
BspQI GCTCTTC 2 cut(s) 579, 1998
BspT107I GGYRCC 3 cut(s) 56, 718, 1528
BspTI CTTAAG 1 cut(s) 1364
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 1086
BsrI ACTGG 6 cut(s) 113, 412, 722, 953, 1291, 1904
BssECI CCNNGG 2 cut(s) 183, 1392
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
Bst4CI ACNGT 3 cut(s) 267, 1180, 1300
Bst6I CTCTTC 6 cut(s) 550, 564, 579, 1083, 1718, 1998
BstAFI CTTAAG 1 cut(s) 1364
BstAPI GCANNNNNTGC 1 cut(s) 1129
BstBAI YACGTR 1 cut(s) 1826
BstC8I GCNNGC 4 cut(s) 683, 1222, 1329, 1546
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 475, 711, 1276
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 2 cut(s) 275, 2095
BstMAI GTCTC 3 cut(s) 665, 1315, 1445
BstMWI GCNNNNNNNGC 4 cut(s) 1129, 1324, 1649, 2073
BstNI CCWGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
BstNSI RCATGY 2 cut(s) 432, 1931
BstSCI CCNGG 6 cut(s) 256, 485, 714, 799, 1391, 2039
BstSFI CTRYAG 2 cut(s) 1155, 1316
BstSLI GKGCMC 1 cut(s) 1569
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 1892
BstV2I GAAGAC 2 cut(s) 96, 756
BstX2I RGATCY 3 cut(s) 172, 661, 1060
BstYI RGATCY 3 cut(s) 172, 661, 1060
BsuI GTATCC 2 cut(s) 455, 1527
BsuRI GGCC 1 cut(s) 1766
BtgZI GCGATG 1 cut(s) 757
BtsCI GGATG 3 cut(s) 475, 711, 1276
BtsI GCAGTG 1 cut(s) 1617
BtsIMutI CAGTG 6 cut(s) 120, 405, 1209, 1284, 1533, 1617
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 4 cut(s) 683, 1222, 1329, 1546
CfoI GCGC 2 cut(s) 275, 2095
Cfr13I GGNCC 1 cut(s) 891
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 9 cut(s) 39, 429, 529, 596, 1719, 1855, 1913, 1928, 2077
DraI TTTAAA 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 1792
Eam1104I CTCTTC 6 cut(s) 550, 564, 579, 1083, 1718, 1998
EarI CTCTTC 6 cut(s) 550, 564, 579, 1083, 1718, 1998
Ecl136II GAGCTC 1 cut(s) 1544
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 1546
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 891
Eco53kI GAGCTC 1 cut(s) 1544
Eco57I CTGAAG 3 cut(s) 531, 545, 2022
Eco88I CYCGRG 1 cut(s) 897
EcoICRI GAGCTC 1 cut(s) 1544
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 6 cut(s) 256, 485, 714, 799, 1391, 2039
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 1546
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 9 cut(s) 42, 432, 532, 599, 1722, 1858, 1916, 1931, 2080
FalI AAGNNNNNCTT 6 cut(s) 1209, 1241, 1358, 1390, 1995, 2027
FaqI GGGAC 1 cut(s) 253
FatI CATG 9 cut(s) 38, 428, 528, 595, 1718, 1854, 1912, 1927, 2076
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 3 cut(s) 69, 994, 1606
Fnu4HI GCNGC 2 cut(s) 276, 1881
FokI GGATG 3 cut(s) 462, 698, 1283
FriOI GRGCYC 1 cut(s) 1546
Fsp4HI GCNGC 2 cut(s) 276, 1881
FspBI CTAG 7 cut(s) 840, 861, 975, 1328, 1590, 1755, 1964
GlaI GCGC 2 cut(s) 274, 2094
GluI GCNGC 2 cut(s) 276, 1881
HaeIII GGCC 1 cut(s) 1766
HhaI GCGC 2 cut(s) 275, 2095
Hin1II CATG 9 cut(s) 42, 432, 532, 599, 1722, 1858, 1916, 1931, 2080
Hin6I GCGC 2 cut(s) 273, 2093
HinP1I GCGC 2 cut(s) 273, 2093
HinfI GANTC 8 cut(s) 50, 857, 998, 1009, 1207, 1407, 1900, 2057
HphI GGTGA 5 cut(s) 152, 172, 410, 1370, 1633
Hpy166II GTNNAC 5 cut(s) 418, 434, 833, 972, 1176
Hpy188I TCNGA 8 cut(s) 34, 64, 172, 210, 355, 550, 1336, 1554
Hpy188III TCNNGA 4 cut(s) 230, 692, 1436, 1520
Hpy8I GTNNAC 5 cut(s) 418, 434, 833, 972, 1176
HpyCH4III ACNGT 3 cut(s) 267, 1180, 1300
HpyCH4IV ACGT 5 cut(s) 381, 510, 1599, 1750, 1825
HpyF10VI GCNNNNNNNGC 4 cut(s) 1129, 1324, 1649, 2073
HpySE526I ACGT 5 cut(s) 381, 510, 1599, 1750, 1825
Hsp92II CATG 9 cut(s) 42, 432, 532, 599, 1722, 1858, 1916, 1931, 2080
HspAI GCGC 2 cut(s) 273, 2093
KpnI GGTACC 1 cut(s) 1532
LguI GCTCTTC 2 cut(s) 579, 1998
LmnI GCTCC 2 cut(s) 260, 709
Lsp1109I GCAGC 1 cut(s) 1892
LweI GCATC 4 cut(s) 720, 1039, 1630, 1957
MaeI CTAG 7 cut(s) 840, 861, 975, 1328, 1590, 1755, 1964
MaeII ACGT 5 cut(s) 381, 510, 1599, 1750, 1825
MaeIII GTNAC 8 cut(s) 499, 511, 634, 879, 1685, 1714, 1821, 1943
MflI RGATCY 3 cut(s) 172, 661, 1060
MhlI GDGCHC 3 cut(s) 265, 1546, 1569
MlyI GAGTC 2 cut(s) 866, 2051
MmeI TCCRAC 2 cut(s) 1443, 2021
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 5 cut(s) 8, 129, 339, 375, 1365
MspA1I CMGCKG 1 cut(s) 668
MspCI CTTAAG 1 cut(s) 1364
MspR9I CCNGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
MvaI CCWGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 1129, 1324, 1649, 2073
NdeI CATATG 3 cut(s) 69, 994, 1606
NheI GCTAGC 1 cut(s) 1327
NlaIII CATG 9 cut(s) 42, 432, 532, 599, 1722, 1858, 1916, 1931, 2080
NlaIV GGNNCC 5 cut(s) 58, 663, 720, 1062, 1530
NmeAIII GCCGAG 1 cut(s) 1792
NmuCI GTSAC 3 cut(s) 499, 634, 1943
NspI RCATGY 2 cut(s) 432, 1931
PciI ACATGT 2 cut(s) 428, 1927
PciSI GCTCTTC 2 cut(s) 579, 1998
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 6 cut(s) 50, 998, 1009, 1207, 1407, 1900
PfoI TCCNGGA 2 cut(s) 485, 2039
PkrI GCNGC 2 cut(s) 277, 1882
PleI GAGTC 2 cut(s) 865, 2051
PpsI GAGTC 2 cut(s) 865, 2051
Ppu21I YACGTR 1 cut(s) 1826
PscI ACATGT 2 cut(s) 428, 1927
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 1546
Psp6I CCWGG 6 cut(s) 256, 485, 714, 799, 1391, 2039
PspGI CCWGG 6 cut(s) 256, 485, 714, 799, 1391, 2039
PspN4I GGNNCC 5 cut(s) 58, 663, 720, 1062, 1530
PspPI GGNCC 1 cut(s) 891
PstI CTGCAG 1 cut(s) 1320
PsuI RGATCY 3 cut(s) 172, 661, 1060
PvuII CAGCTG 1 cut(s) 668
SacI GAGCTC 1 cut(s) 1546
SapI GCTCTTC 2 cut(s) 579, 1998
SaqAI TTAA 5 cut(s) 8, 129, 339, 375, 1365
SatI GCNGC 2 cut(s) 276, 1881
Sau96I GGNCC 1 cut(s) 891
ScaI AGTACT 2 cut(s) 494, 1370
SchI GAGTC 2 cut(s) 866, 2051
ScrFI CCNGG 6 cut(s) 258, 487, 716, 801, 1393, 2041
SduI GDGCHC 3 cut(s) 265, 1546, 1569
SfaNI GCATC 4 cut(s) 720, 1039, 1630, 1957
SfcI CTRYAG 2 cut(s) 1155, 1316
SinI GGWCC 1 cut(s) 891
SmlI CTYRAG 1 cut(s) 1364
SmoI CTYRAG 1 cut(s) 1364
SpeI ACTAGT 1 cut(s) 839
SsiI CCGC 2 cut(s) 271, 276
SspMI CTAG 7 cut(s) 840, 861, 975, 1328, 1590, 1755, 1964
SstI GAGCTC 1 cut(s) 1546
StyD4I CCNGG 6 cut(s) 256, 485, 714, 799, 1391, 2039
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 267, 1180, 1300
TaiI ACGT 5 cut(s) 384, 513, 1602, 1753, 1828
TaqI TCGA 3 cut(s) 287, 1540, 1676
TaqII GACCGA 1 cut(s) 339
TatI WGTACW 4 cut(s) 492, 1368, 1906, 2020
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 6 cut(s) 50, 998, 1009, 1207, 1407, 1900
Tru1I TTAA 5 cut(s) 8, 129, 339, 375, 1365
Tru9I TTAA 5 cut(s) 8, 129, 339, 375, 1365
TscAI CASTG 6 cut(s) 120, 412, 1209, 1291, 1540, 1617
TseFI GTSAC 3 cut(s) 499, 634, 1943
TseI GCWGC 1 cut(s) 1880
Tsp45I GTSAC 3 cut(s) 499, 634, 1943
TspDTI ATGAA 6 cut(s) 564, 756, 936, 1011, 1361, 1939
TspGWI ACGGA 3 cut(s) 674, 821, 1803
TspRI CASTG 6 cut(s) 120, 412, 1209, 1291, 1540, 1617
Vha464I CTTAAG 1 cut(s) 1364
VpaK11BI GGWCC 1 cut(s) 891
VspI ATTAAT 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 2 cut(s) 571, 1849
XceI RCATGY 2 cut(s) 432, 1931
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 7 cut(s) 840, 861, 975, 1328, 1590, 1755, 1964
ZrmI AGTACT 2 cut(s) 494, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.